Query= MSMg01no536_b08.b1 MSMg01no536_b08.b1 CHROMAT_FILE:
MSMg01no536_b08.b1 PHD_FILE: MSMg01no536_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:05 2005
(625 letters)
>mm_chr17_90847023_90848047
Length = 1025
Score = 1139 bits (589), Expect = 0.0
Identities = 613/621 (98%)
Strand = Plus / Minus
Query: 5 gaattcagattttataaataatctgacaacaccaagatttgctcaggtggtgacatatct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 825 gaattcagattttaaaaataatctgacaacaccaagatttgctcaggtggtgacatacct 766
Query: 65 aggtgcttagaagtccagccatgggactcattcaggctcagggtccgtttccctagtgat 124
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 765 aggtgcttagaagtccagccatgggactcattcaggctcagggttcatttccctagtgat 706
Query: 125 atccccatagctcctatctcaagggaagtctgaaaataaacacctttcttgtccacttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 atccccatagctcctatctcaagggaagtctgaaaataaacacctttcttgtccacttga 646
Query: 185 tcttcatcttggctcattcttgtctactcaagttataaaatatcactttggagagaaacc 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 645 tcttcatcttggctcattcttgtctacacaagttataaaatatcactttggagagaaacc 586
Query: 245 tttaatagtcttttaaaatattccaaaatgttagaattttgagcgttaattatccacact 304
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 585 tttaatagtcttttaaaatattccaaaatattagaattttgagcattaattatccacact 526
Query: 305 gcatccttcaagttttgacagaatggagtgaaaacaactatctttgaaagcgcatatccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcatccttcaagttttgacagaatggagtgaaaacaactatctttgaaagcgcatatccc 466
Query: 365 aatagtgccttgccataaagtttctcatttcatcatcagtgcaaccttgtcagggtgaat 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aatagtgccttaccataaagtttctcatttcatcatcagtgcaaccttgtcagggtgaat 406
Query: 425 ggtcattatttgctgacaaagaaacacattcagagagatgattttcttttcattgccact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggtcattatttgctgacaaagaaacacattcagagagatgattttcttttcattgccact 346
Query: 485 taattaataagcagacatttttcttttgttttttccatgacacgtatgataaggcagagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taattaataagcagacatttttcttttgttttttccatgacacgtatgataaggcagagc 286
Query: 545 tttgaatactgctatgtatgtcattgtagaacccctgaactatgtccagtcattactctc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttgaatactgctatgtatgtcattgtagaacccctgaactatgtccagtcattactctc 226
Query: 605 catttcaattatcaaaagatt 625
|||||||||||||||||||||
Sbjct: 225 catttcaattatcaaaagatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_b08.g1 MSMg01no536_b08.g1 CHROMAT_FILE:
MSMg01no536_b08.g1 PHD_FILE: MSMg01no536_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:05 2005
(520 letters)
>mm_chr17_90678905_90679824
Length = 920
Score = 915 bits (473), Expect = 0.0
Identities = 509/521 (97%), Gaps = 2/521 (0%)
Strand = Plus / Plus
Query: 1 cttctttggcataaagcaaatagagaacaaacttgtctggagagcctgtggtgtctttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctttggcataaagcaaatagagaacaaacttgtctggagagcctgtggtgtctttta 260
Query: 61 aagctcttttaaagtatcatgctttattgttgaaccctactggagggatgcacacatgtt 120
|||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 261 aagctcttttaaagtaccatgccttattgttgaaccctactggagtgatgcacacatgta 320
Query: 121 actggccttcagtaaaaaagagtcccagctcacaacagaacatggctatggaatgaatcc 180
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgccttcagtaaaaaaaagtcccagctcacaacagaacatggctatggaatgaatcc 380
Query: 181 tgagttgaattgggccatctgtgagttatgaatctttccaaacatgtagctctctgttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagttgaattgggccatctgtgagttatgaatctttccaaacatgtagctctctgttat 440
Query: 241 cttcttcagttctatgatttcaaatgtgtgctgtttgttgactttctgatgtgtctgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcttcagttctatgatttcaaatgtgtgctgtttgttgactttctgatgtgtctgttc 500
Query: 301 tgacatgctggtaatttatttacacagatgaatacctcatcaaatcttagatacaatata 360
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tgacatgctggtaatttattttcacagatgaatacctcattaaatcttagatacaatata 560
Query: 361 atgacaatgatgtacatttagtactgatcatatgcttaatacatatctatgagaagatgt 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 atgacaatgatgtacatttagtactgatcatatgcttcatacatatctatgagaagatgt 620
Query: 421 aagtcattaggaatccagatattcacagagattgtgtgatagtttgaatatgcttggct- 479
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtcattaggaatccagatatgcacagagattgtgtgatagtttgaatatgcttggctc 680
Query: 480 attggtaattgacactattaggaggtatgactttatgggag 520
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 at-ggtaattgacactattaggaggtatgactttatgggag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
