Query= MSMg01no537_m22.b1 MSMg01no537_m22.b1 CHROMAT_FILE:
MSMg01no537_m22.b1 PHD_FILE: MSMg01no537_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:16 2005
(690 letters)
>mm_chr17_90748226_90749316
Length = 1091
Score = 1276 bits (660), Expect = 0.0
Identities = 680/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Minus
Query: 5 gaattctaggtgtctgtcaatttttaaacagtgattacatcttgggccaaattacatttt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaattctaggtgtctgttaatttttaaacagtgattacatcttgggccaaattacatttt 832
Query: 65 gtgaaaacgaaataaaagtcatgagtgtggttctgagcgtttaggctgtagctacccctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gtgaaaacgaaataaaagtcatgagtgtggttctgagcgtttaggctgtagctacccctt 772
Query: 125 tagcctttctccaggctctaacacggcttcctgaagcctgaaacacatgacctttaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tagcctttctccaggctctaacacggcttcctgaagcctgaaacacatgacctttaaaac 712
Query: 185 agtttttttt-aaaccctaaggcaggatagactgagtgtgtatttaagcttattaatgag 243
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agttttttttaaaaccggaaggcaggatagactgagtgtgtatttaagcttattaatgag 652
Query: 244 gagagcaaaaggggctgggggtagtgttacattgtatctcctgctggttgggcattttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagagcaaaaggggctgggggtagtgttacattgtatctcctgctggttgggcattttta 592
Query: 304 tgacagaggtattcaaagaaaaaagtatgtcattctacttattactgttaattagctata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgacagaggtattcaaagaaaaaagtatgtcattctacttattactgttaattagctata 532
Query: 364 aaagcaggcattgggggctccacatcccacagggcatggcagagagaagggatttgaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaagcaggcattgggggctccacatcccacagggcatggcagagagaagggatttgaaat 472
Query: 424 ttcagtagcaaactggattgaggtaaggtagatactacatgggtttcaaaattgagttca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttcagtagcaaactggattgaggtaaggtagatactacatgggtttcaaaattgagttca 412
Query: 484 tttgctcattaaactccaggcattacaaagatatttcatactgtggaaagaactggtgcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttgctcattaaactccaggcattacaaagatatttcatactgtggaaagaactggtgcc 352
Query: 544 tcatgcacaacggtagctgcctaatgcaaagaatggtgcatgagtgaagtgactggngga 603
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 351 tcatgcgcaacggtagctgcctaatgcaaagaatggtgcatgagtgaagtgactggggga 292
Query: 604 tgcatttgttatattgaattgctatgtagatgttgctcattattatgtgagaaaatcatc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgcatttgttatattgaattgctatgtagatgttgctcattattatgtgagaaaatcatc 232
Query: 664 aatgtttgcatgcttttctacttttga 690
|||||||||||||||| ||||||||||
Sbjct: 231 aatgtttgcatgctttcctacttttga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space: 735080
Effective search space used: 735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_m22.g1 MSMg01no537_m22.g1 CHROMAT_FILE:
MSMg01no537_m22.g1 PHD_FILE: MSMg01no537_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:17 2005
(637 letters)
>mm_chr17_90627301_90628336
Length = 1036
Score = 1185 bits (613), Expect = 0.0
Identities = 631/637 (99%), Gaps = 1/637 (0%)
Strand = Plus / Plus
Query: 1 aaagatcagtgtgtaggaaatatggcgaggatttaagtttgagcctaggcacattgattt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatcagtgtgtaggaaatatggtgaggatttaagtttgagcctaggcacattgattt 260
Query: 61 aaaacttgatacaattgctatggtagcattagctttctattaactttcctagtcaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacttgatacaattgctatggtagcattagctttctattaactttcctagtcaaaatt 320
Query: 121 aaatcagtacatacatctttgaagtaataataatttaatttgatgctgtaattaattcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcagtacatacatctttgaagtaataataatttaatttgatgctgtaattaattcca 380
Query: 181 ttttctgctgtggattttgatattgcaatttattttatgcaaaaaaatgctggaagaata 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ttttctgctgtggattttgatattgcaatttattttatgcaaaaaa-tgctggaagaata 439
Query: 241 aggcttctaaaaaggggttcaaagagaggtacagatttaatttttaattagatttaatgc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggcttctaaaagggggttcaaagagaggtacagatttaatttttaattagatttaatgc 499
Query: 301 tttcttcacattcttaaatgacttcttgtctctctgttaagcttgacacatcacaaagtc 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 tttcttcacattcttaaatgacttcttgtctctctgttaagcttggcacatcacaaagtc 559
Query: 361 caatttgatgttcagttaaaagtgctgaactatttcaattcatttggggtcagatgccta 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 caatttgatgttcagttaaaagtgctgaactatttcaattcatttgcggtcagatgccta 619
Query: 421 ttgtatattacataaatatactatttatagttagtataggtcactgaaatgcatgtaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtatattacataaatatactatttatagttagtataggtcactgaaatgcatgtaatg 679
Query: 481 ggggaagtttgcatgtggttaatacatttaatattagattatcagtagagcattgataca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggggaagtttgcatgtggttaatacatttaatattagattatcagtagagcattgataca 739
Query: 541 aaactcatcaatacacaaattctccaaataagtacattaaaaagaactagataataatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaactcatcaatacacaaattctccaaataagtacattaaaaagaactagataataatta 799
Query: 601 tttaacataattttatttcagtgcagtctctgaaaaa 637
||||||||||||||||||||||||||||||||||||
Sbjct: 800 cttaacataattttatttcagtgcagtctctgaaaaa 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
