BAC Information

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BAC

Clone NameMSMg01-537M22
Chromosome17 (Build37)
Map Location 90,627,501 - 90,749,116
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537M22.T7 (MSMg01no537_m22.b1)MSMg01-537M22.TJ (MSMg01no537_m22.g1)
ACCAG604690AG604691
length744748
length of high quality
(start - end)
690 (51 - 740)637 (81 - 717)
definitionCHROMAT_FILE: MSMg01no537_m22.b1 PHD_FILE: MSMg01no537_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:16 2005CHROMAT_FILE: MSMg01no537_m22.g1 PHD_FILE: MSMg01no537_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,748,430 - 90,749,116)(90,627,501 - 90,628,136)
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGGTGTCTGTCAATTTTTAAACAGTGATTACATCTTGGG
CCAAATTACATTTTGTGAAAACGAAATAAAAGTCATGAGTGTGGTTCTGA
GCGTTTAGGCTGTAGCTACCCCTTTAGCCTTTCTCCAGGCTCTAACACGG
CTTCCTGAAGCCTGAAACACATGACCTTTAAAACAGTTTTTTTTAAACCC
TAAGGCAGGATAGACTGAGTGTGTATTTAAGCTTATTAATGAGGAGAGCA
AAAGGGGCTGGGGGTAGTGTTACATTGTATCTCCTGCTGGTTGGGCATTT
TTATGACAGAGGTATTCAAAGAAAAAAGTATGTCATTCTACTTATTACTG
TTAATTAGCTATAAAAGCAGGCATTGGGGGCTCCACATCCCACAGGGCAT
GGCAGAGAGAAGGGATTTGAAATTTCAGTAGCAAACTGGATTGAGGTAAG
GTAGATACTACATGGGTTTCAAAATTGAGTTCATTTGCTCATTAAACTCC
AGGCATTACAAAGATATTTCATACTGTGGAAAGAACTGGTGCCTCATGCA
CAACGGTAGCTGCCTAATGCAAAGAATGGTGCATGAGTGAAGTGACTGGN
GGATGCATTTGTTATATTGAATTGCTATGTAGATGTTGCTCATTATTATG
TGAGAAAATCATCAATGTTTGCATGCTTTTCTACTTTTGAGTGA
NNNNGGCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGATCAGTGTGTAGGAAA
TATGGCGAGGATTTAAGTTTGAGCCTAGGCACATTGATTTAAAACTTGAT
ACAATTGCTATGGTAGCATTAGCTTTCTATTAACTTTCCTAGTCAAAATT
AAATCAGTACATACATCTTTGAAGTAATAATAATTTAATTTGATGCTGTA
ATTAATTCCATTTTCTGCTGTGGATTTTGATATTGCAATTTATTTTATGC
AAAAAAATGCTGGAAGAATAAGGCTTCTAAAAAGGGGTTCAAAGAGAGGT
ACAGATTTAATTTTTAATTAGATTTAATGCTTTCTTCACATTCTTAAATG
ACTTCTTGTCTCTCTGTTAAGCTTGACACATCACAAAGTCCAATTTGATG
TTCAGTTAAAAGTGCTGAACTATTTCAATTCATTTGGGGTCAGATGCCTA
TTGTATATTACATAAATATACTATTTATAGTTAGTATAGGTCACTGAAAT
GCATGTAATGGGGGAAGTTTGCATGTGGTTAATACATTTAATATTAGATT
ATCAGTAGAGCATTGATACAAAACTCATCAATACACAAATTCTCCAAATA
AGTACATTAAAAAGAACTAGATAATAATTATTTAACATAATTTTATTTCA
GTGCAGTCTCTGAAAAAACGATAACTGTTTGACATTCTAAAATAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_m22.b1 MSMg01no537_m22.b1 CHROMAT_FILE:
MSMg01no537_m22.b1 PHD_FILE: MSMg01no537_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:16 2005
         (690 letters)



>mm_chr17_90748226_90749316
          Length = 1091

 Score = 1276 bits (660), Expect = 0.0
 Identities = 680/687 (98%), Gaps = 1/687 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggtgtctgtcaatttttaaacagtgattacatcttgggccaaattacatttt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaattctaggtgtctgttaatttttaaacagtgattacatcttgggccaaattacatttt 832

                                                                       
Query: 65  gtgaaaacgaaataaaagtcatgagtgtggttctgagcgtttaggctgtagctacccctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gtgaaaacgaaataaaagtcatgagtgtggttctgagcgtttaggctgtagctacccctt 772

                                                                       
Query: 125 tagcctttctccaggctctaacacggcttcctgaagcctgaaacacatgacctttaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tagcctttctccaggctctaacacggcttcctgaagcctgaaacacatgacctttaaaac 712

                                                                       
Query: 185 agtttttttt-aaaccctaaggcaggatagactgagtgtgtatttaagcttattaatgag 243
           |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agttttttttaaaaccggaaggcaggatagactgagtgtgtatttaagcttattaatgag 652

                                                                       
Query: 244 gagagcaaaaggggctgggggtagtgttacattgtatctcctgctggttgggcattttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagagcaaaaggggctgggggtagtgttacattgtatctcctgctggttgggcattttta 592

                                                                       
Query: 304 tgacagaggtattcaaagaaaaaagtatgtcattctacttattactgttaattagctata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgacagaggtattcaaagaaaaaagtatgtcattctacttattactgttaattagctata 532

                                                                       
Query: 364 aaagcaggcattgggggctccacatcccacagggcatggcagagagaagggatttgaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaagcaggcattgggggctccacatcccacagggcatggcagagagaagggatttgaaat 472

                                                                       
Query: 424 ttcagtagcaaactggattgaggtaaggtagatactacatgggtttcaaaattgagttca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttcagtagcaaactggattgaggtaaggtagatactacatgggtttcaaaattgagttca 412

                                                                       
Query: 484 tttgctcattaaactccaggcattacaaagatatttcatactgtggaaagaactggtgcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttgctcattaaactccaggcattacaaagatatttcatactgtggaaagaactggtgcc 352

                                                                       
Query: 544 tcatgcacaacggtagctgcctaatgcaaagaatggtgcatgagtgaagtgactggngga 603
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 351 tcatgcgcaacggtagctgcctaatgcaaagaatggtgcatgagtgaagtgactggggga 292

                                                                       
Query: 604 tgcatttgttatattgaattgctatgtagatgttgctcattattatgtgagaaaatcatc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgcatttgttatattgaattgctatgtagatgttgctcattattatgtgagaaaatcatc 232

                                      
Query: 664 aatgtttgcatgcttttctacttttga 690
           |||||||||||||||| ||||||||||
Sbjct: 231 aatgtttgcatgctttcctacttttga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space:   735080
Effective search space used:   735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no537_m22.g1 MSMg01no537_m22.g1 CHROMAT_FILE:
MSMg01no537_m22.g1 PHD_FILE: MSMg01no537_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:17 2005
         (637 letters)



>mm_chr17_90627301_90628336
          Length = 1036

 Score = 1185 bits (613), Expect = 0.0
 Identities = 631/637 (99%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagatcagtgtgtaggaaatatggcgaggatttaagtttgagcctaggcacattgattt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatcagtgtgtaggaaatatggtgaggatttaagtttgagcctaggcacattgattt 260

                                                                       
Query: 61  aaaacttgatacaattgctatggtagcattagctttctattaactttcctagtcaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacttgatacaattgctatggtagcattagctttctattaactttcctagtcaaaatt 320

                                                                       
Query: 121 aaatcagtacatacatctttgaagtaataataatttaatttgatgctgtaattaattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcagtacatacatctttgaagtaataataatttaatttgatgctgtaattaattcca 380

                                                                       
Query: 181 ttttctgctgtggattttgatattgcaatttattttatgcaaaaaaatgctggaagaata 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ttttctgctgtggattttgatattgcaatttattttatgcaaaaaa-tgctggaagaata 439

                                                                       
Query: 241 aggcttctaaaaaggggttcaaagagaggtacagatttaatttttaattagatttaatgc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggcttctaaaagggggttcaaagagaggtacagatttaatttttaattagatttaatgc 499

                                                                       
Query: 301 tttcttcacattcttaaatgacttcttgtctctctgttaagcttgacacatcacaaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 tttcttcacattcttaaatgacttcttgtctctctgttaagcttggcacatcacaaagtc 559

                                                                       
Query: 361 caatttgatgttcagttaaaagtgctgaactatttcaattcatttggggtcagatgccta 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 caatttgatgttcagttaaaagtgctgaactatttcaattcatttgcggtcagatgccta 619

                                                                       
Query: 421 ttgtatattacataaatatactatttatagttagtataggtcactgaaatgcatgtaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtatattacataaatatactatttatagttagtataggtcactgaaatgcatgtaatg 679

                                                                       
Query: 481 ggggaagtttgcatgtggttaatacatttaatattagattatcagtagagcattgataca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggggaagtttgcatgtggttaatacatttaatattagattatcagtagagcattgataca 739

                                                                       
Query: 541 aaactcatcaatacacaaattctccaaataagtacattaaaaagaactagataataatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaactcatcaatacacaaattctccaaataagtacattaaaaagaactagataataatta 799

                                                
Query: 601 tttaacataattttatttcagtgcagtctctgaaaaa 637
            ||||||||||||||||||||||||||||||||||||
Sbjct: 800 cttaacataattttatttcagtgcagtctctgaaaaa 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)