Query= MSMg01no538_h10.b1 MSMg01no538_h10.b1 CHROMAT_FILE:
MSMg01no538_h10.b1 PHD_FILE: MSMg01no538_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:07 2005
(616 letters)
>mm_chr17_94636142_94637159
Length = 1018
Score = 1125 bits (582), Expect = 0.0
Identities = 607/616 (98%), Gaps = 5/616 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcatgctagcacaatgaaggcttt-aaaaaacaccttattttcacaaatgctg 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 749 gaattctgcatgctagcacaatgaaggctttaaaaaaacaccttattttcacaaatgctg 690
Query: 64 ttttggttatgaaactcaacgatatcattcagaaccccaaaatcaacttttgtggctatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttttggttatgaaactcaacgatatcattcagaaccccaaaatcaacttttgtggctatt 630
Query: 124 ttagggaagaccaattagtataaaacaagtaattaaacttgattttgcttaattgccagt 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttaaggaagaccaattagtataaaacaagtaattaaacttgattttgcttaattgccagt 570
Query: 184 gtaatgtgtctggttctcatctttgaaatgactagaggctgaaactacatttttcacatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gtaatgtgtctggttctcatctttgaaatgactagaggctgaaactacatttttcacatt 510
Query: 244 ggcattttagtgtttataaaattataaagaaaaatgtaattagactaaatgatagaatt- 302
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 509 ggcattttagtgtttataaaattataaagaaaaatgtaattagactgaatgatagaatta 450
Query: 303 aaaatttgaagaccagtgtgagcataaatttgacaagagtttctctattttgtaattcat 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaaattgaagaccagtgtgagcataaatttgacaagagtttctctattttgtaattcat 390
Query: 363 tctttgatgtgtgtttatgagtgtggtagtaggcatgtacatcagaagtcaaagttgctt 422
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 389 tctttgatgtgtgtttatgagtgtggtggtaggcatgtacatcagaagtcaaagttgctt 330
Query: 423 ccaatatgtgttccctccttaccttggagaaacagtttctttcatgtttctaccttgtag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccaatatgtgttccctccttaccttggagaaacagtttctttcatgtttctaccttgtag 270
Query: 483 tgtacttcaggttagctggccccagacctcccattttgatagaggagtgctggagttaca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtacttcaggttagctggccccagacctcccattttgatagaggagtgctggagttaca 210
Query: 543 tacctac--acacacacacacacacacacacacacacacacacacacacacacttgcatc 600
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tacctacatacacacacacacacacacacacacacacacacacacacacacacttgcatc 150
Query: 601 tcgtttttttccaggg 616
||| ||||||||||||
Sbjct: 149 tcg-ttttttccaggg 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1018
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1008
Effective search space: 610848
Effective search space used: 610848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_h10.g1 MSMg01no538_h10.g1 CHROMAT_FILE:
MSMg01no538_h10.g1 PHD_FILE: MSMg01no538_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:07 2005
(637 letters)
>mm_chr17_94485900_94486937
Length = 1038
Score = 1203 bits (622), Expect = 0.0
Identities = 634/638 (99%), Gaps = 1/638 (0%)
Strand = Plus / Plus
Query: 1 aacttccacagtgatccagagaagttaatgacttattgatgaatgagctgtcagagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttccacagtgatccagagaagttaatgacttattgatgaatgagctgtcagagaaga 260
Query: 61 cactgacaaccctataatattaaaatacattgatttctttaagaaaaaaa-ttcatactt 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cactgacaaccctataatattaaaatacattgatttctttaagaaaaaaaattcatactt 320
Query: 120 ggtatgatatgatatacaaggtactgaagtaatgatatttagatttcagtattatgtaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtatgatatgatatacaaggtactgaagtaatgatatttagatttcagtattatgtaaa 380
Query: 180 acggtcaataatatttctcatttattacatattgacctctaatacttttattttccacta 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtcaataatatttctcatttattacatattgacctctaatacttttattttccacta 440
Query: 240 gcagatgttcaaaccttatgcaagacttgtagcttaatctatagcaacatcattttgcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagatgttcaaaccttatgcaagacttgtagcttaatctatagcaacatcattttgcag 500
Query: 300 aatacagggaactatgctctgttcaattgaatttcaaatacttttcaatattaaaaccct 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 aatacagggaactatgctctattcaattgaatttcaaatacttttcaatattaaaactct 560
Query: 360 tgagcatttatttagaaaagaagcttagaacttattgtaactgatgagcaattaattagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagcatttatttagaaaagaagcttagaacttattgtaactgatgagcaattaattagt 620
Query: 420 ttccttcctttccattctgagggaatctgaaatggtctgacacctgtgtttgtccttggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccttcctttccattctgagggaatctgaaatggtctgacacctgtgtttgtccttggg 680
Query: 480 cattcatttgattggtaatgaatcatagttcaatgacaatcactgtgcatcccactgcaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattcatttgattggtaatgaatcatagttcaatgacaatcactgtgcatcccactgcaa 740
Query: 540 ctggcagtgaaaacataaaaacgcatttcactggactttctccaaagcaaagaggaaaaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggcagtgaaaacataaaaacgcatttcactggactttctccaaagcaaagaggaaaaa 800
Query: 600 tgacaaactaatggcataaaatgttgtactgcctggtc 637
||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgacaaactaatggcataaaatgttgtactgcctggtc 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
