Query= MSMg01no538_i01.b1 MSMg01no538_i01.b1 CHROMAT_FILE:
MSMg01no538_i01.b1 PHD_FILE: MSMg01no538_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:10 2005
(678 letters)
>mm_chr17_51094460_51095536
Length = 1077
Score = 1274 bits (659), Expect = 0.0
Identities = 671/675 (99%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 1 ttagttctcaaaataacaaataatgtttttctttaaagtaagattataaagtttgtttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagttctcaaaataacaaataatgtttttctttaaagtaagattataaagtttgtttgc 260
Query: 61 ttggccaatataaaaatgagctctgaagtaaaaatattccattttttaagtgaaaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggccaatataaaaatgagctctgaagtaaaaatattccattttttaagtgaaaatgac 320
Query: 121 tagtggtgtcatgaagattcacatgggaaatagaggatgcagaaatgttaacaatcactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tagtggtgtcatgaagattcacatgggaaatagaggatgcagaaatgttaaca-tcactg 379
Query: 181 agaagattaaacagcaccatatgttaaagaaaatgaccagcaaatcttacaggcaaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaagattaaacagcaccatatgttaaagaaaatgaccagcaaatcttacaggcaaagta 439
Query: 241 tggctgaagttacaaggaaaatagtaacccaaagaattgtaatcatctactttaggagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggctgaagttacaaggaaaatagtaacccaaagaattgtaatcatctactttaggagat 499
Query: 301 agaatatatctaaagaaaagaggagactatttggcaaaagcttataatatgttaatctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaatatatctaaagaaaagaggagactatttggcaaaagcttataatatgttaatctgc 559
Query: 361 aaatgttatagatgttgtgtatttttagaatagaccttgacagaccaaataacatacttt 420
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 560 aaatgttatagatgttgtgtatttttagaatagacctcgatagaccaaataacatacttt 619
Query: 421 tttggcaccaagtatggaaatgctattacatcctgaactcaagttactttaaataatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttggcaccaagtatggaaatgctattacatcctgaactcaagttactttaaataatgtt 679
Query: 481 gaaatttaaaattgctaacatcagagcttttgaatcaaaatgtgggaaattttattttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaatttaaaattgctaacatcagagcttttgaatcaaaatgtgggaaattttattttca 739
Query: 541 ggacaacctaaactctaaattggaaattctagaaactgggcattccttgatttactttgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggacaacctaaactctaaattggaaattctagaaactgggcattccttgatttactttgt 799
Query: 601 atcggggttttgtttctataataaaaatgggaacaataacaacttcattaggatgagata 660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800 atcggggttttgtttctataataaaaacgggaacaataacaacttcattaggatgagata 859
Query: 661 gaaagtttttactta 675
|||||||||||||||
Sbjct: 860 gaaagtttttactta 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_i01.g1 MSMg01no538_i01.g1 CHROMAT_FILE:
MSMg01no538_i01.g1 PHD_FILE: MSMg01no538_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:10 2005
(461 letters)
>mm_chr17_51244224_51245084
Length = 861
Score = 837 bits (433), Expect = 0.0
Identities = 454/461 (98%)
Strand = Plus / Minus
Query: 1 atgttgtgtcccctctgtttttgacatttctgtgatcctgttaggcattctggaaggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgttgtgtcccctctgtttttgacatttctgtgatcctgttaggcattctggaaggtgc 602
Query: 61 agaccaaaaatgaaacagatgtgagaaggtgtttgaattgtataattgaatacttgtggt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 601 agaccaaaaatgaaacagatgtgagaaggcgtttgaattgtataattgaatacttgtggt 542
Query: 121 acaggaaattctaggggtttggtggaccttccccacccctagtgctcagaggtatgggga 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 acaggaaattctaggggtttggtggaccttccccacccccagtgctcagaggtatgggga 482
Query: 181 gatattatggatagcaccactgtggtatataccatgccattactttaaataagattttga 240
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 481 gatattatggatagcaccactgtggtatataccatgccgttgctttaaataagattttga 422
Query: 241 tgaagacacatggtcctctccatcttggtgtcactaaccaagaatggttgtggccatcct 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 tgaagacacatggtcctctccatcttgatgtcactaaccaagaatggttgtggccatcct 362
Query: 301 aatgataccattgaccaagttacatgtctcttttcatctttatgagatcattatccaaga 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 361 aatgataccattgaccaagttacatgtctcttttcatcttcatgagatcattagccaaga 302
Query: 361 tagcaacaaggcaatgtgattctttcttgcctgtggtgagctctgtgattcattcattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagcaacaaggcaatgtgattctttcttgcctgtggtgagctctgtgattcattcattat 242
Query: 421 cagggcacaaatccctgtggggatctatgcaccttacaaat 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagggcacaaatccctgtggggatctatgcaccttacaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
