NGGTGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAAGGTTCTCTGTGGAAAAAGTGCTTTAGGGAGGGGACC
CTGTGGGCAGGCCCTGATCAAGCTAGGACAGCGAGAGCGCTCAGAACAGC
AGCCTCCATCATCTCGCAGGCTTTTATACGTGGAACCAGTTATCATTTTG
TGTATGGACTTGAATGCTCATCTTGCTTAGCTTCTTTTTTCTCCCTAAAG
ATTCAGATTGTATTCCTTAGCCATGACACAGGTGGGTGAGATGAGAGACC
ACAAACTTTCCTCTAAACCACGACACACTGCTAACTGCTATGACTAGTAT
AGCCCATGTTACTGGGCCTTTCCATCTCAGACTCTTCTGAAAGAGGTCAA
GACTCAAGCGTTTGTTCTGAACCTATCAGAGAATATAGGCAGCTGATGAG
TTCTATGCTAGGACTGTACATACCATTGTACAAGATGGGCATGTATATAA
CAAAATATAAATCACACTGAAATACAAATGCTGAAGAATACGTTGTCAAA
GACCTCATAAAATATAATCAAGAGGAACACCATATCAAATCTCTAGCTTT
AAAAGGATCACATACAACAGATTTTTTTTAAAAAATAAGATTTCATGGAT
TCTGCTTCTGAGATGTTGGTTTCTCACCGGCAAGTGAGAAAATCTCACGT
TACACCTCGGGATCTTTGGATTTACTGGGCTTTTCCTACCTTTGTTCAAC
TGTA

NTACAGACACACCCACGCCAAACTTCCCGTACGTTCTCAGGNNCTTAGTA
TNNTTCCCNNNNATTCCTCCCTANCTTCCACCTCAATGANGCTCTATGAA
TTCTAANCACTTGGTAATACTTCCCTAATATTACTTTATATTATANTTTA
TTAATCAAATACTATTTCTTTNAAAANACNTTTTCTTAAAATCTTTATGT
GCCTTTTTTTTTTTNANCTCTTCTTCATTTTNAAATGGTCCCCCTTTTTT
NNNACTTTTCCTTTTTATTNNTCTTTATTNAATTGTTAATTTTCCCNNAA
TTTTTTTAAATTTTTTTTTCCCNTTTTTTTTTTTTTTTCCNTCCTCTTTT
TTTNNNTTNNNTTTTTTTTTTGGGNAATTAAAAATTTTTTCCACTTTTTT
TAAANTNNNTTTTTTTCCCTTTTNNNCCCTTTTTTTTTTCCTTTTAAAAA
TTTTTTCCCCTTTCTCTNNTTTTTCNTTTTNNTCTTCTTTTTTNNNNNNN
NTTCCTCTTTTTTTCCCTCCCCCTCTTTNTTTTTTNCTTTGCTTTTTTNC
TTTTTTTNNNTNNTNTTTTTTAATTTCTTCTCCCCTTAATAATTATCTTT
TTTTTTCCCTTTTCGGGCGGCTTCCTTTTTTTTTTTTTTTTNNTNTNTTT
TCTCTCCTTTTTTTTTCCCCTCTCATTTNNTTTTTTTTTCTTCCTCTTTT
TTTTTTTTTTTTCTTCTTCCTTTTTTTTCCCCTCCCCCTTTTTTTNTTTT
TTCTTTTTTTCTTNTTTNTTTTCTTCTTTCTCTAATTATGACCAAACAGT
CCCAAAG

Query= MSMg01no539_l06.b1 MSMg01no539_l06.b1 CHROMAT_FILE:
MSMg01no539_l06.b1 PHD_FILE: MSMg01no539_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:45 2005
         (694 letters)



>mm_chr17_50938304_50939397
          Length = 1094

 Score = 1265 bits (654), Expect = 0.0
 Identities = 681/690 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggttctctgtggaaaaagtgctttagggaggggaccctgtgggcaggccct 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggctctctgtggaaaaagtgctttagggaggggaccctgtgggcaggccct 264

                                                                       
Query: 65  gatcaagctaggacagcgagagcgctcagaacagcagcctccatcatctcgcaggctttt 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatcaagctaggacagcgagagcactcagaacagcagcctccatcatctcgcaggctttt 324

                                                                       
Query: 125 atacgtggaaccagttatcattttgtgtatggacttgaatgctcatcttgcttagcttct 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatgtggaaccagttatcattttgtgtatggacttgaatgctcatcttgcttagcttct 384

                                                                       
Query: 185 tttttctccctaaagattcagattgtattccttagccatgacacaggtgggtgagatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttctccctaaagattcagattgtattccttagccatgacacaggtgggtgagatgag 444

                                                                       
Query: 245 agaccacaaactttcctctaaaccacgacacactgctaactgctatgactagtatagccc 304
           |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 445 agaccacaaattttcctctaaaccacgacacactgctaactgttgtgactagtatagccc 504

                                                                       
Query: 305 atgttactgggcctttccatctcagactcttctgaaagaggtcaagactcaagcgtttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttactgggcctttccatctcagactcttctgaaagaggtcaagactcaagcgtttgt 564

                                                                       
Query: 365 tctgaacctatcagagaatataggcagctgatgagttctatgctaggactgtacatacca 424
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 tctgaagctatcagagaatataggcagctgatgagttctatgctgggactgtacatacca 624

                                                                       
Query: 425 ttgtacaagatgggcatgtatataacaaaatataaatcacactgaaatacaaatgctgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtacaagatgggcatgtatataacaaaatataaatcacactgaaatacaaatgctgaa 684

                                                                       
Query: 485 gaatacgttgtcaaagacctcataaaatataatcaagaggaacaccatatcaaatctcta 544
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatacgttgtcaaatacctcataaaatataatcaagaggaacaccatatcaaatctcta 744

                                                                       
Query: 545 gctttaaaaggatcacatacaacagattttttttaaaaaataagatttcatggattctgc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctttaaaaggatcacatacaacagattttttttaaaaaataagatttcatggattctgc 804

                                                                       
Query: 605 ttctgagatgttggtttctcaccggcaagtgagaaaatctcacgttacacctcgggatct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttctgagatgttggtttctcaccggcaagtgagaaaatctcacgttacacctcgggatct 864

                                         
Query: 665 ttggatttactgggcttttcctacctttgt 694
           ||||||||||||||||||||||||||||||
Sbjct: 865 ttggatttactgggcttttcctacctttgt 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)