BAC Information

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BAC

Clone NameMSMg01-540I07
Chromosome17 (Build37)
Map Location 55,463,414 - 55,463,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540I07.T7 (MSMg01no540_i07.b1)MSMg01-540I07.TJ (MSMg01no540_i07.g1)
ACCAG606750AG606751
length735718
length of high quality
(start - end)
555 (52 - 606)355 (83 - 437)
definitionCHROMAT_FILE: MSMg01no540_i07.b1 PHD_FILE: MSMg01no540_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:48 2005CHROMAT_FILE: MSMg01no540_i07.g1 PHD_FILE: MSMg01no540_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAACACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTCTAAATTTGGTTTCTGCAGACTGAAACTTGGATAC
TGAAGGCTATTGCAGGGGCCTGGGGTGAGAATAAGAACAATCAATGTATT
GGAGTCTTTGGAATATTGTAGGATTTCAATATAGATCCACCTCCCCAACA
CACACATTTACTAACTGATAACATAAATTTATCACTTTAACTTTTATCTT
TCTGCATTTTATTTCTCGTTGCTTATCTTGTTTTCTATCTTCTAATGAGG
TCTGAGTTCATTACTCTACCCTGTTTTCTGTCTTTGGTTTTTTTATGCTC
TATTCATTCTTGGTTCATCTTGGGGCAGGTAGCTGTCAGAAAGTTTCGAT
GAATAAACGTCCTTAATGGATCCCTTTGATAAAATGAAAATCTTCCAGGA
CAATATTTACAGCTCATAATTTAGGGTCCTAATTCTGATGAAGGGAAGCC
AGAAGTCAAGGTTCTGAACCTACATGACAGCAAGGGCCATTTGGGCTTGG
GTGGTGGAACTTGAACTCTATTGGCAATATCTCCCATAGGTGCAAAGAAA
CAAGGTTCCTTTGGGAAATGATCGTCTATTGATGCTGGCTGGTTTACCAA
TATGACATGACAATCAAGAACAGTTACTAGGAAGACTGGTGGTGAGAGTG
ATCATCCTGGAGTGACTATCTTCTGGCATGATATG
GTTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTGGAATTTTTGGG
GTCACTTATGTTTACTATCATATCATCTGCAAATAGTGGTATTTTGACTT
CTTTCCAATATGTATCCCTTTGATCTTCTTTTGTTGTCTAATTGCTAAGG
CTAGGACTTCAAGTACTATATTGAATAGGTAGGGAGAAAGTGGGCAGCCT
TGTCTGGTTCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCTCCATTTAC
TTTGATGTTGGCTACTAGTTTGCTGTAGATTGCTTTTTTTTCATGTTTAG
GTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATCATGAACAGAT
TTGGGTTTTGTCAAATGTTTCTCAGCATCTAATGAGATTATCATGTGGTT
TTAGTCTTTGAGTTTGTTTATATAGTAGATTTCACTGATGGATTTCCATA
TATTGAACCATTCCCTGCATCCCCGGGGAAGAAGCCTACTTGGATCTTGG
AGGGATAATCATTTTTGAAGGTGTTCCTTGGAATTTGGGTTCCCGAAAAT
TTTTTATTGAGTAATTTTTTGCATCTGGTTTTTCATAAAGGGGAAAATTG
GGTCCCGAAAACTTCCCCCTTTCCTTTTGGTTAGAAACCTTTTGGGGGGG
GGGTATCAAGTTTATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_i07.b1 MSMg01no540_i07.b1 CHROMAT_FILE:
MSMg01no540_i07.b1 PHD_FILE: MSMg01no540_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:48 2005
         (555 letters)



>mm_chr17_55463210_55464164
          Length = 955

 Score = 1065 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttctaaatttggtttctgcagactgaaacttggatactgaaggctattgcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattcttttctaaatttggtttctgcagactgaaacttggatactgaaggctattgcag 696

                                                                       
Query: 65  gggcctggggtgagaataagaacaatcaatgtattggagtctttggaatattgtaggatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gggcctggggtgagaataagaacaatcaatgtattggagtctttggaatattgtaggatt 636

                                                                       
Query: 125 tcaatatagatccacctccccaacacacacatttactaactgataacataaatttatcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tcaatatagatccacctccccaacacacacatttactaactgataacataaatttatcac 576

                                                                       
Query: 185 tttaacttttatctttctgcattttatttctcgttgcttatcttgttttctatcttctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttaacttttatctttctgcattttatttctcgttgcttatcttgttttctatcttctaa 516

                                                                       
Query: 245 tgaggtctgagttcattactctaccctgttttctgtctttggtttttttatgctctattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgaggtctgagttcattactctaccctgttttctgtctttggtttttttatgctctattc 456

                                                                       
Query: 305 attcttggttcatcttggggcaggtagctgtcagaaagtttcgatgaataaacgtcctta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 attcttggttcatcttggggcaggtagctgtcagaaagtttcgatgaataaacgtcctta 396

                                                                       
Query: 365 atggatccctttgataaaatgaaaatcttccaggacaatatttacagctcataatttagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atggatccctttgataaaatgaaaatcttccaggacaatatttacagctcataatttagg 336

                                                                       
Query: 425 gtcctaattctgatgaagggaagccagaagtcaaggttctgaacctacatgacagcaagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtcctaattctgatgaagggaagccagaagtcaaggttctgaacctacatgacagcaagg 276

                                                                       
Query: 485 gccatttgggcttgggtggtggaacttgaactctattggcaatatctcccataggtgcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gccatttgggcttgggtggtggaacttgaactctattggcaatatctcccataggtgcaa 216

                      
Query: 545 agaaacaaggt 555
           |||||||||||
Sbjct: 215 agaaacaaggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)