TTTGTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAGG
AAACCTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATCTTTTTTTAAATTTTTTTATTAGGTATTTTCCTCGTTT
ACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCCCAATCCC
CTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGC
ATCTAAAGTTGGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACT
AGGCCATCTTTTGGTGCATATGCAGCTAGAAACAAGAGTTCCGGGGTACT
GGTTATTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCT
CCTTGGGTAATATCTCTACCTCCTGCATTGGGGGCCATGTGACCCATCCA
ATAGCTGACTGTGATCATCCACTTCTGTATTTGCTAGGCCCCGGCATAGT
CTCACAAGAGAGAGCTATATCTGGGTCCTTTCAGCAAAATTTGGCTAGTG
TGTGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGAATGGATCCCTGCA
TATGACAATCACTAGATGGTCCATCTTTTTGTCACAGCTCCAAATTTTGT
CTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCATTTCTAGGAAGGGGTA
AA

NTTATTTACCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACTTTATTTTTC
TAAGCATGACATTGAAGTTTTGTAGATCTTGATCTGATAACACATGCATA
TGCCTATGTGGTCTGGGACTGGATTCTTTTTTTTTTTTTTTTTTTTTTAA
AGATTGGTTTTCTGGGACTGGATTCTAAACAGCTCTGCAGTGGGCTGGAA
TGTAGCCTTGGTGACCTTTAGCTGATAGCACTACCCATTTACAAAAAGGT
TGAGCACATTCATCACACATTTAGACACCTAGAATTTTTAGGTAAATTGG
TAGGAATTACATAAAAGAGTTCTATTGAAAAGTCAAATAAAAAAGAATTG
CCTAGAGTAAGCACTGAACTTTCGCTTTATTACAGTGATCCAGATTCTCT
TCTTTGAAAAAAAGTTTCTTATAGCTGAGTGTACATTCTGCCAGATATTT
ATCTTTGCGTTGATAAGTTGGTTTGGTTAAAGTAATTTCCTATAATAATG
TTCACAAATACATGTGTTTTTTTGATTATTTAATAATAAATATAGGATGT
TTTTCTATTTCAACATTAAAGAGCTGTATTTTTTAATACTTAGTTGAAAA
TAAAATAAAAGTACAAATGGGTCATCTGACCAAGAAGAAACTAAAGCACT
TTTCTTTTTAATTTTGTAGATTTCCAGTGCTT

Query= MSMg01no541_c05.g1 MSMg01no541_c05.g1 CHROMAT_FILE:
MSMg01no541_c05.g1 PHD_FILE: MSMg01no541_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:40 2005
         (637 letters)



>mm_chr17_95033307_95034343
          Length = 1037

 Score = 1007 bits (521), Expect = 0.0
 Identities = 584/637 (91%), Gaps = 50/637 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaactttatttttctaagcatgacattgaagttttgtagatcttgatctgataacaca 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 759 attaactttatttttctaagcatgactttgaagttttgtagatcttgatctgataacaca 700

                                                                       
Query: 61  tgcatatgcctatgtggtctgggactggattcttttttttttttttttttttttaaagat 120
           |||||||||||| ||||                                           
Sbjct: 699 tgcatatgcctacgtgg------------------------------------------- 683

                                                                       
Query: 121 tggttttctgggactggattctaaacagctctgcagtgggctggaatgtagccttggtga 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ------tctgggactggattctaaacagctctgcagtgggctggaatgtagccttggtga 629

                                                                       
Query: 181 cctttagctgatagcactacccatttacaaaaaggttgagcacattcatcacacatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctttagctgatagcactacccatttacaaaaaggttgagcacattcatcacacatttag 569

                                                                       
Query: 241 acacctagaatttttaggtaaattggtaggaattacataaaagagttctattgaaaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acacctagaatttttaggtaaattggtaggaattacataaaagagttctattgaaaagtc 509

                                                                       
Query: 301 aaataaaaaagaattgcctagagtaagcactgaactttcgctttattacagtgatccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaataaaaaagaattgcctagagtaagcactgaactttcgctttattacagtgatccaga 449

                                                                       
Query: 361 ttctcttctttgaaaaaaagtttcttatagctgagtgtacattctgccagatatttatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttctcttctttgaaaaaaagtttcttatagctgagtgtacattctgccagatatttatct 389

                                                                       
Query: 421 ttgcgttgataagttggtttggttaaagtaatttcctataataatgttcacaaatacatg 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgcattgataagttggtttggttaaagtaatttcctataataatgttcacaaatacatg 329

                                                                       
Query: 481 tgtttttttgattatttaataataaatataggatgtttttctatttcaacattaaagagc 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tg-ttttttgattatttaataataaatataggatgtttttctatttcaacattaaagagc 270

                                                                       
Query: 541 tgtattttttaatacttagttgaaaataaaataaaagtacaaatgggtcatctgaccaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtattttttaatacttagttgaaaataaaataaaagtacaaatgggtcatctgaccaag 210

                                                
Query: 601 aagaaactaaagcacttttctttttaattttgtagat 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 209 aagaaactaaagcacttttctttttaattttgtagat 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)