BAC Information

Click to search

BAC

Clone NameMSMg01-541P23
Chromosome17 (Build37)
Map Location 48,573,235 - 48,749,102
singlet/doubletdoublet
Overlap geneBzrpl1, Unc5cl
Upstream gene1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541P23.T7 (MSMg01no541_p23.b1)MSMg01-541P23.TJ (MSMg01no541_p23.g1)
ACCAG607880AG607881
length768794
length of high quality
(start - end)		584 (49 - 632)238 (78 - 315)
definitionCHROMAT_FILE: MSMg01no541_p23.b1 PHD_FILE: MSMg01no541_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:52 2005CHROMAT_FILE: MSMg01no541_p23.g1 PHD_FILE: MSMg01no541_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,748,522 - 48,749,102)(48,573,235 - 48,573,469)
sequence
NNACCTAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATTAGCCCAAACTCACCTGGAACTCATGATGCCCCTGCC
TCAGCCTCTGGATTGCAGGGGTGCACCAGCATGGCCAGCTGTTGTTTTTC
GAGGTCAGCGTGAATCATCTAGAAACTGTTACCTGTAAAAGCGTCTGCTC
ATCAGTCTCTTGCACCTAACCCTCCTTCATCTTTTGGAATTCCACACTAT
CGCCGTTGTCGGTGGAGCACCAAGTCCCAAGCCTTTGTGCAGCTGGTTCT
GTAGCCGAGAACCCAAGGATGTAAGGAGCAACCATGTCGTTGATGCCTGG
GTGTGTCCTTCACGGATCGCATGCTCTGTTTTACAGCCCCCACAGAAAGC
ATCAGTGACCCAGAGGGCAAAGGCAGTTCCCCAAAGCAGTCAGCGACATA
GAGGGACCTGACAGAGATGGGCCACCTGCCTCATGGATCATCTGCCTGGG
GTATGATGAAGGGACAAGGAAAACGATGAGGAAGGGATCCCTCACCTAGT
TGAAACCTCTCAAGCTGAGACTCAAGAGTCACAAGACTGAAAAGATTACT
CAGTGGTTAGGAGCCCTAGTTGCTCTTCCAGAGGACACAAATTTGGTACC
CATGACCCACACTAAATGGTTTATATCCTCCTGTAACTCTAGATCGGGTG
TATCTAATACTCTCTTCTGGTCTCTACTGGCACCCATGCAGAAGGAGCAC
ACATGCTTACACTTACTC

NAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCGTCTGCAAGAGCAATGTG
TGCTCATAACTTCTGAGCCATCTATCTCTTTAGCCCCAAGATTACATTTT
GATAAGGAAGGACTTTGGAAAGAAACGGATCAGTCCAAAGGAGACAAAGG
AAACATTCATCTGACTATCTAAAAGGAAAGTTCTCCGAGCAGACGTGGAG
GGGGTGGGGGAAGAGGTAGGGGAAGGTGTGTACAGGANAATTCTTANGGN
TGGGGACAGAGGTCCTGAGATTTATTGTTTTGTTCCAGGAATTATGAGGG
ACTGCTGATTGATTGTATAGTCTTTGGAAGGGAAGCCAGAAGGAGAAAAA
GCTATGCTTATGCTGTGATATCACCCTCTTTTCTGTGTTAGTGTTTTGGA
GGTAGAGTAGTAAATCCATGTATTTGACAAGAGGCTCTAGTATCCCGTAG
TTCAGGGCCCACTATTTTTTATCCTCCGAGGATGAGGTTAGTTCTGGTTT
TCAAGAGGACCGTTTTATTAGCTTTAGCCAGTTTGTCGCGCAGTTTAGCT
CTATCTTTCTATCTCCCCTCTTCCGATTACTATTGTATTGTTTTGTCGGC
CGACCTCTATTTAATAGTATATTTCGTGTCCGGCCTCGATTTACAACTTT
TGCCGCCTAGTTTTTCATTAGTCGGTGATTTAGGTCTCGCCCTGTAGACC
CCCTGGTTATCATTTGCTTCTATCGGTTTCTCTCTCCTCCGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_p23.b1 MSMg01no541_p23.b1 CHROMAT_FILE:
MSMg01no541_p23.b1 PHD_FILE: MSMg01no541_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:52 2005
         (584 letters)



>mm_chr17_48748278_48749261
          Length = 984

 Score = 1085 bits (561), Expect = 0.0
 Identities = 576/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactattagcccaaactcacctggaactcatgatgcccctgcctcagcctctgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ggaattcactattagcccaaactcacctggaactcatgatgcccctgcctcagcctctgg 766

                                                                       
Query: 64  attgcaggggtgcaccagcatggccagctgttgtttttcgaggtcagcgtgaatcatcta 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 765 attgcaggggtgcaccagcacggccagctgttgtttttcgaggtcagcgtgaatcatcta 706

                                                                       
Query: 124 gaaactgttacctgtaaaagcgtctgctcatcagtctcttgcacctaaccctccttcatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaaactgttacctgtaaaagcgtctgctcatcagtctcttgcacctaaccctccttcatc 646

                                                                       
Query: 184 ttttggaattccacactatcgccgttgtcggtggagcaccaagtcccaagcctttgtgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttttggaattccacactatcgccgttgtcggtggagcaccaagtcccaagcctttgtgca 586

                                                                       
Query: 244 gctggttctgtagccgagaacccaaggatgtaaggagcaaccatgtcgttgatgcctggg 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 585 gctggttctgtagccgagaacccaaggatgtgaggagcaaccatgtcgttgatgcctggg 526

                                                                       
Query: 304 tgtgtccttcacggatcgcatgctctgttttacagcccccacagaaagcatcagtgaccc 363
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgtgtccttcacagatcgcatgctctgttttacagcccccacagaaagcatcagtgaccc 466

                                                                       
Query: 364 agagggcaaaggcagttccccaaagcagtcagcgacatagagggacctgacagagatggg 423
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 465 agagggcaaaggcagttccccaaagcagtcagggacatagagtgacctgacagagatggg 406

                                                                       
Query: 424 ccacctgcctcatggatcatctgcctggggtatgatgaagggacaaggaaaacgatgagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccacctgcctcatggatcatctgcctggggtatgatgaagggacaaggaaaacgatgagg 346

                                                                       
Query: 484 aagggatccctcacctagttgaaacctctcaagctgagactcaagagtcacaagactgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aagggatccctcacctagttgaaacctctcaagctgagactcaagagtcacaagactgaa 286

                                                    
Query: 544 aagattactcagtggttaggagccctagttgctcttccaga 584
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagattactcagtggttaggagccctagttgctcttccaga 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_p23.g1 MSMg01no541_p23.g1 CHROMAT_FILE:
MSMg01no541_p23.g1 PHD_FILE: MSMg01no541_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:53 2005
         (238 letters)



>mm_chr17_48573035_48573672
          Length = 638

 Score =  422 bits (218), Expect = e-122
 Identities = 230/235 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcgtctgcaagagcaatgtgtgctcataacttctgagccatctatctctttagcccc 60
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 201 cagtcgtctgcaagagcaatgtgtgctcgtaacttctgggccatctatctctttagcccc 260

                                                                       
Query: 61  aagattacattttgataaggaaggactttggaaagaaacggatcagtccaaaggagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagattacattttgataaggaaggactttggaaagaaacggatcagtccaaaggagacaa 320

                                                                       
Query: 121 aggaaacattcatctgactatctaaaaggaaagttctccgagcagacgtggagggggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaacattcatctgactatctaaaaggaaagttctccgagcagacgtggagggggtgg 380

                                                                  
Query: 181 gggaagaggtaggggaaggtgtgtacagganaattcttanggntggggacagagg 235
           |||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 381 gggaagaggtaggggaaggtgtgtacaggagaattcttaggggtggggacagagg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |