Query= MSMg01no542_c18.b1 MSMg01no542_c18.b1 CHROMAT_FILE:
MSMg01no542_c18.b1 PHD_FILE: MSMg01no542_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:07 2005
(707 letters)
>mm_chr17_53700896_53702002
Length = 1107
Score = 890 bits (460), Expect = 0.0
Identities = 490/502 (97%), Gaps = 4/502 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggacagcttgttctgcatcgcaagactgcttaaaaactaaaacaaatttatt 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 704 gaattccaggacagcttgttctgcatagcaagactgcttaaaaactaaaacaaatttatt 645
Query: 65 aaattaacttttcaga----ttatttatttttattttatgtacattggtattctacctgc 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaattaacttttcagatcatttatttatttttattttatgtacattggtattctacctgc 585
Query: 121 ttgcatgtctgtgtgagggtgccagatcccctggaactggagtagccccattaaatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttgcatgtctgtgtgagggtgccagatcccctggaactggagtagccccattaaatacat 525
Query: 181 ttttaaaagaaggaagactttctgagcatggcgatacatgactgtaatcctgatgacaag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 524 ttttaaaagaagaaagactttctgagcatggcgatacatgactgtaatcctgatgactag 465
Query: 241 aagggacctgatgtcctggcttggagaatataagaggaaaagaaaaagaagaccatgcca 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aagggtcctgatgtcctggcttggagaatataagaggaaaagaaaaagaagaccatgcca 405
Query: 301 cagagatggatatgtaattcagacacacagaggacgaaggaccatgagacaggaagagtg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 404 cagagatggatatgtaattcagacacacagaggacgaaggaccatgtgacaggaagagtg 345
Query: 361 aatgtagaggtttactgtgcattgtaatgctaaattctgtacccaaacggaaagttgcct 420
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 344 aatgtagaggtttgctgtgcattgtaatgctaaattctgtacccaaagggaaagttgcct 285
Query: 421 acatgacaattcttatatttacaagcttttgtcctgcaaaccttgttccttgatgtaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acatgacaattcttatatttacaagcttttgtcctgcaaaccttgttccttgatgtaaaa 225
Query: 481 caactggttaaataaaactgcc 502
||| ||||||||||||||||||
Sbjct: 224 caattggttaaataaaactgcc 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_c18.g1 MSMg01no542_c18.g1 CHROMAT_FILE:
MSMg01no542_c18.g1 PHD_FILE: MSMg01no542_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:07 2005
(635 letters)
>mm_chr17_53560700_53561734
Length = 1035
Score = 1162 bits (601), Expect = 0.0
Identities = 625/633 (98%)
Strand = Plus / Plus
Query: 1 actgaaggtacaatgtattcttaggtataagaatgtccactgttccccagagatccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaggtacaatgtattcttaggtataagaatgtccactgttccccagagatccagag 260
Query: 61 agctacacttgctcttgctctcagaacactgagatttcatcagttctgcttatgtgtagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctacacttgctcttgctctcagaacactgagatttcatcagttctgcttatgtgtagt 320
Query: 121 cacggaccacgcttcaaacctctcagtcatggctgtgtttcaaggaaacatcactttaaa 180
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgaccatgcttcaaacctctcagtcatggctgtgtttcaaggaaacatcactttaaa 380
Query: 181 agacatgtagtgagctgcgtatgacccatagtttgctgaaccgccctccccccacgtctg 240
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 381 agacatgtaatgagctgcgtatgacccatagtttgctgaaccaccctccccccacatctg 440
Query: 241 caccggtctgctgagattcctctgggcatcacaatccccttgctctgtgagactactggc 300
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 caccagtctgctgagattcctctgtgcatcacaatccccttgctctgtgagactactggc 500
Query: 301 cttgtcatagtgcctgaaagccacctgcaaagtgtcaaagttctggtgattaaatttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgtcatagtgcctgaaagccacctgcaaagtgtcaaagttctggtgattaaatttctt 560
Query: 361 caagtggtggcgagcagctgcaaccacggctctctggtggtccttcccacgaagatattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagtggtggcgagcagctgcaaccacggctctctggtggtccttcccacgaagatattc 620
Query: 421 atctgggcttctataatggatgagatcgccagctcctattgaagaaaaagggagtcttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctgggcttctataatggatgagatcgccagctcctattgaagaaaaagggagtcttgt 680
Query: 481 atgtgaatttgaaatatggccatggagttttaagagagagacagaggcagagagacctag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtgaatttgaaatatggccatggagttttaagagagagacagaggcagagagacctag 740
Query: 541 caacctctagaaatgaacaaacaaaacaattatatctgatgctccccactacaaggtctc 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caacctctaggaatgaacaaacaaaacaattatatctgatgctccccactacaaggtctc 800
Query: 601 atgtagcccaggctggcctcattgaactcatgg 633
|||||||||||||||||||||||||||||||||
Sbjct: 801 atgtagcccaggctggcctcattgaactcatgg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
