Query= MSMg01no542_h14.b1 MSMg01no542_h14.b1 CHROMAT_FILE:
MSMg01no542_h14.b1 PHD_FILE: MSMg01no542_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:31 2005
(605 letters)
>mm_chr17_5861963_5862974
Length = 1012
Score = 1087 bits (562), Expect = 0.0
Identities = 595/610 (97%), Gaps = 9/610 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgtttatctctgtacctttgactttattcattttagttattgagctttgatg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgtacctttgactttattcattttagttattgagctttgatg 264
Query: 65 actaaggt------gttgaggactgagccaaggagcaaactgtggagaggagagtgattc 118
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaaggtatctgtgttgaggactgagccaaggagcaaactgtggagaggagagtgattc 324
Query: 119 cttttgctgctggctaggcaggagggctgaatacctgcatcctggtgtcttaatcatcgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttttgctgctggctaggcaggagggctgaatacctgcatcctggtgtcttaatcatcgc 384
Query: 179 atctgcttttaggtgtgcttaaatcctacagccttcctttgagcgacttttattcttagg 238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 atctgcttttaggtgtgcttaaatcctacagccttcctttgagcgactttcattcttagg 444
Query: 239 ttatattcgcggcactctctttgctttgaatgccagctcatttgcatagagagcatcgag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatattcgcggcactctctttgctttgaatgccagctcatttgcatagagagcatcgag 504
Query: 299 gccctgctataaataagatgctaatcttaaacctccctgtcagcatcctttgtgtgtggc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccctgctataaataagatgctaatcttaaacctccctgtcagcatcctttgtgtgtggc 564
Query: 359 tgctgtttgttttcccacttgactgtgcctttgcatttttggtcctctgccttgcccagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctgtttgttttcccacttgactgtgcctttgcatttttggtcctctgccttgcccagc 624
Query: 419 ctcatgtctgttctgttctcc-gtagctactctgtagaattcaacctaaacgatgcctcc 477
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ctcatgtctgttctgttctcccgtagctactctgtagaattcaacctaattgatgcctcc 684
Query: 478 ttaactaccctattttattagccctcctcagaggaggctttgtcgtaccagttgtctttt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaactaccctattttattagccctcctcagaggaggctttgtcgtaccagttgtctttt 744
Query: 538 tttttttttt--aagattttatttatttattatatctaagtacactgtggctgtcttcag 595
|||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 745 ttttttttttttaagattttatttatttattatatgtaagtatactgtggctgtcttcag 804
Query: 596 acattccaga 605
||||||||||
Sbjct: 805 acattccaga 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1012
Length adjustment: 10
Effective length of query: 595
Effective length of database: 1002
Effective search space: 596190
Effective search space used: 596190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_h14.g1 MSMg01no542_h14.g1 CHROMAT_FILE:
MSMg01no542_h14.g1 PHD_FILE: MSMg01no542_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:31 2005
(655 letters)
>mm_chr17_6063278_6064331
Length = 1054
Score = 1259 bits (651), Expect = 0.0
Identities = 654/655 (99%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 1 catgaatggacacataaaacacaagcaaaaatgatgtaagcaaagacagatacagaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 catgaatggacacataaaacacaagcaaaaatgatgtaagcaaagacagatacagaaaga 795
Query: 61 cacagacatacagtctgtgtgtgtgtggcaggaatgggcagaggtagtcatagcatagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cacagacatacagtctgtgtgtgtgtggcaggaatgggcagaggtagtcatagcatagta 735
Query: 121 gtctctgtgttgcaaattttaagaaagtgtttgatttctaagtctggtggcatatttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtctctgtgttgcaaattttaagaaagtgtttgatttctaagtctggtggcatatttgtg 675
Query: 181 gtgtacagtggccctttccctgtctacactgtagtgggtaaggcctcccttttacagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtgtacagtggccctttccctgtctacactgtagtgggtaaggcctcccttttacagaat 615
Query: 241 ttattcccatgatcctctagaaaaccctacaaagaggacgatgtagaccctttgctggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttattcccatgatcctctagaaaaccctacaaagaggacgatgtagaccctttgctggtg 555
Query: 301 cacatttgtggggaaatgccctggtgccctaggttttgatatatcaagaacagcccgtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cacatttgtggggaaatgccctggtgccctaggttttgatatatcaagaacagcccgtcc 495
Query: 361 atgacgtcaaatgtttaaccacaaatcggctttctgaacctcaggagcacagctgccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atgacgtcaaatgtttaaccacaaatcggctttctgaacctcaggagcacagctgccaag 435
Query: 421 aaacagctgtcgcttgcctaccccatgtccagttccttttcaagactgctcaaggaccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaacagctgtcgcttgcctaccccatgtccagttccttttcaagactgctcaaggaccat 375
Query: 481 ggttgatctgacagtctgttggttaagacattttgttagttttaaattgaggtttcaccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggttgatctgacagtctgttggttaagacattttgttagttttaaattgaggtttcaccc 315
Query: 541 tgaagtctagggccagcatcttacacaaagcagagtgcataacagaggctgctaataggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 314 tgaagtctagggccagcatcttacacaaagcagagtgcataacagaggctg-taataggc 256
Query: 601 ttctcttctctcagctccaccactctgctctgtcttctgtgtagcccttcatggc 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttctcttctctcagctccaccactctgctctgtcttctgtgtagcccttcatggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
