BAC Information

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BAC

Clone NameMSMg01-542L20
Chromosome17 (Build37)
Map Location 7,314,195 - 7,314,792
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604
Downstream geneRps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542L20.T7 (MSMg01no542_l20.b1)MSMg01-542L20.TJ (MSMg01no542_l20.g1)
ACCAG608441AG608442
length769765
length of high quality
(start - end)		602 (52 - 653)552 (80 - 631)
definitionCHROMAT_FILE: MSMg01no542_l20.b1 PHD_FILE: MSMg01no542_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:52 2005CHROMAT_FILE: MSMg01no542_l20.g1 PHD_FILE: MSMg01no542_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCATCCTGATCTGCAGGCAACACCGGGGAAGGCTGTTT
TCCATAGGCAGCAAAGAGAAAACTAGATTCCTCACGGGCCAGAGCTTGAG
CATGGAAGACCTCAAAGCCCACCGACAGTGACTCACTTCCTCCAACAAGG
GCACGCCTCCTCATTGTGCCATTCCCTATGCCCAAGGATTCAAACACATG
AATCTATGGGGGCCAAACCTATTCAAACCACCACACCACCCTTACTTACA
GTTAATCTATTACACTCATTTGCGTGGAAGTGCCTTCCATGCTCCTCAAG
GACTTCGGTGCATTCGCTGGCCTGCCCCCCACTTTCTCAGAGCCCCATCT
TCATTGTTTAGCTCATTATCTCACATGCAGCCACAAACCCTCCTGTTCAC
TTTAGTATTCCTTGCCTTGCTGTGTCCCCCCTTAATTATTCTCTGATCCC
AGTGTCTGTCCTCACTGCAACGTGTGTGGGCAACTTGCATCTCCATCGTG
GGCCTTCTCTCCCTGTCTGCAGAAAACAGCTCTGGCCTTGTTAATGCTCC
CCTTGGTGTTGACATGGCTCTTGATCATCCACACTCTCAACCTCTGCTGA
TGGACCAAAGGATGGTGTGGGGGAGGCAATTGTGAAATCTGCTAAGTCGA
GCACCAGCTAGGCGCTTATGTTTGAGATGAGCTGCTGACTCTTCCTCCCG
TGGGGTCCATCCTCCTGCT

NGGGGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGCAACGCTGGGTTCTGC
AGACTTTGGATACCTGGGTTTGCAACACTGGCCGCCCCTGTACCCCCTGA
CCAAGGAAAGTGGAGAATTTAGATGGACATCAGAACATCAAAAAGCCTTT
GAAAATATTAAGAAGGCCCTGCTGACTGCGCCAGCCTCGGCACTGCCAGA
TCTAACCAAGCCCTTCATCCTCTATGTTGATGAGAGGGCAGGGGTGGCCA
GAGGAGTTCTTACTCAGGCTATAGGGCCGTGAGAGAGGCCAGTGGCATAT
TTGTCTAAGAAGCTGGACCCAGTGGCCAGCGGATGGCCCACACGTTTAAA
GGCCGTTGCTACAGTAGCCCTACTCGTTAAGGATGCTGACAAATTAACTC
TGGGACAGCAAATAACTGTGGTAGCCCCCCACTCTCTTGAAAGCATTATC
CATCAGCCCCCAGACCGATGGATGACAAATGCCTGGATGACTCACTACCA
AAGGCTGCTGCTGACTGAATGGGTCGTGTTTGCTCCTCCTGCTATTCTCA
ATACTGCCTGCAAAGTGATCTATGTGACCAGCCGTGGCCAGGTGTTCCAA
ACTGGTACACAGACGGAAGCAGTTTCCTAGTGGAAGTTTTTGTAGATACC
TTTTCGGGATGGGTGGAGGCCTACCCAACAAAAAGAAACTGCCAATGTTG
TGGTTAAGAAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_l20.b1 MSMg01no542_l20.b1 CHROMAT_FILE:
MSMg01no542_l20.b1 PHD_FILE: MSMg01no542_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:52 2005
         (602 letters)



>mm_chr17_7313991_7314992
          Length = 1002

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatcctgatctgcaggcaacaccggggaaggctgttttccataggcagcaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatcctgatctgcaggcaacaccggggaaggctgttttccataggcagcaaa 264

                                                                       
Query: 65  gagaaaactagattcctcacgggccagagcttgagcatggaagacctcaaagcccaccga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 gagaaaactagattcctcacgggccagagcttgagcatggaagacctcaaagcccaccaa 324

                                                                       
Query: 125 cagtgactcacttcctccaacaagggcacgcctcctcattgtgccattccctatgcccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtgactcacttcctccaacaagggcacgcctcctcattgtgccattccctatgcccaa 384

                                                                       
Query: 185 ggattcaaacacatgaatctatgggggccaaacctattcaaaccaccacaccacccttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggattcaaacacatgaatctatgggggccaaacctattcaaaccaccacaccacccttac 444

                                                                       
Query: 245 ttacagttaatctattacactcatttgcgtggaagtgccttccatgctcctcaaggactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttacagttaatctattacactcatttgcgtggaagtgccttccatgctcctcaaggactt 504

                                                                       
Query: 305 cggtgcattcgctggcctgccccccactttctcagagccccatcttcattgtttagctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cggtgcattcgctggcctgccccccactttctcagagccccatcttcattgtttagctca 564

                                                                       
Query: 365 ttatctcacatgcagccacaaaccctcctgttcactttagtattccttgccttgctgtgt 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 565 ttatctcacatgcagccacaaaccctcctgttcactttagtattccatgccttgctgtgc 624

                                                                       
Query: 425 ccccccttaattattctctgatcccagtgtctgtcctcactgcaacgtgtgtgggcaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccccccttaattattctctgatcccagtgtctgtcctcactgcaacgtgtgtgggcaact 684

                                                                       
Query: 485 tgcatctccatcgtgggccttctctccctgtctgcagaaaacagctctggccttgttaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcatctccatcgtgggccttctctccctgtctgcagaaaacagctctggccttgttaat 744

                                                                     
Query: 545 gctccccttggtgttgacatggctcttgatcatccacactctcaacctctgctgatgg 602
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 gctccccttggtgttgacatggctcttgatcatccgcactctcaacctctgctgatgg 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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