Query= MSMg01no542_m09.b1 MSMg01no542_m09.b1 CHROMAT_FILE:
MSMg01no542_m09.b1 PHD_FILE: MSMg01no542_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:55 2005
(516 letters)
>mm_chr17_62959836_62960754
Length = 919
Score = 600 bits (310), Expect = e-175
Identities = 435/520 (83%), Gaps = 75/520 (14%)
Strand = Plus / Plus
Query: 5 gaattccaagttctgtatgagaaagaacttctttcttagcagaca----ctaacataagc 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattccaagttctgtatgagaaagaacttctttcttagcagacagacactaacataagc 264
Query: 61 tcatgtgtgagagcttct-aagtgtttgcattttatcattagtcgaattcaaaggtgctt 119
|||||||||||||||||| || |||| |||||||||||||||| |||||||||||||||
Sbjct: 265 tcatgtgtgagagcttctcaa-tgtta-cattttatcattagtccaattcaaaggtgctt 322
Query: 120 ttcttagcaacataatagtccttggtatgcttctttaccagagagagagagagagagaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcttagcaacataatagtccttggtatgcttctttaccagagagagagagagagagaga 382
Query: 180 gagagagagagagagagagagagagagagaaacaaagagagagaaacaaagagagagaga 239
||||||||||||||||||||||||||||||
Sbjct: 383 gagagagagagagagagagagagagagaga------------------------------ 412
Query: 240 gagagagagagagagagagagagagagagagagagagagagaagccgggcatggtggtgc 299
||||||||||||||||||||||||||| ||
Sbjct: 413 ------------------------------gagagagagagaagccgggcatggtggggc 442
Query: 300 aagcctttaatcccagcactctggaggcagaggcaggcggatttctgagttcgaggccag 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagcctttaatcccagcactcaggaggcagaggcaggcggatttctgagttcgaggccag 502
Query: 360 cctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaa 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 cctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaa 562
Query: 420 aaa-taaaaaaattaaaaaaaaaatagaaagaaagaaagaaagaaagaaagaaagaaaga 478
||| ||||||| |||| ||| |||||||||||||||||||||||| ||| ||| |||
Sbjct: 563 aaaataaaaaa--taaataaa---tagaaagaaagaaagaaagaaagagagagagagaga 617
Query: 479 aaga-a-agaaagaaagaaagaaagaaagaaagaaagaaa 516
||| | |||||||||||||||||||||||||||||||||
Sbjct: 618 gagagagagaaagaaagaaagaaagaaagaaagaaagaaa 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 224
Number of extensions: 80
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 919
Length adjustment: 10
Effective length of query: 506
Effective length of database: 909
Effective search space: 459954
Effective search space used: 459954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_m09.g1 MSMg01no542_m09.g1 CHROMAT_FILE:
MSMg01no542_m09.g1 PHD_FILE: MSMg01no542_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:55 2005
(684 letters)
>mm_chr17_63122615_63123698
Length = 1084
Score = 1272 bits (658), Expect = 0.0
Identities = 677/684 (98%), Gaps = 2/684 (0%)
Strand = Plus / Minus
Query: 1 cagtctagctggagctacacagagctcaaaaaacaagaacaaaacaaaaacaaacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 cagtctagctggagctacacagagctcaaaaaacaagaacaaaacaaaaacaaacaaaaa 986
Query: 61 attctgcaattgtgctagagaaatattatttgtataaacaggtagcaacttccaaaatat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 985 attctgcaattgtgctagagaaatattatttgtataaacaggtagcaactcccagaatat 926
Query: 121 tatatacacacaagcatgcacacacgcatgcacacacacacactgagtggatgtagagaa 180
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 925 tatatacacacaagcatgcacacatgcgtg--cacacacacactgagtggatgtagagaa 868
Query: 181 atgtaacttcaaaactatttgtgtgcctacaagaagggtgcatgtgagagagcagaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 atgtaacttcaaaactatttgtgtgcctacaagaagggtgcatgtgagagagcagaggaa 808
Query: 241 gagcctgatagagcagaggaaggtagaatgataaataaaaatataaaaggggggttttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gagcctgatagagcagaggaaggtagaatgataaataaaaatataaaaggggggttttat 748
Query: 301 ttcactggtattaatttggtaaattatccataatttattagagcttgtgaacacagtggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttcactggtattaatttggtaaattatccataatttattagagcttgtgaacacagtggc 688
Query: 361 agtcgtttttgctctgtcagtaatgaattactacatcattaattttgtcatgggatcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agtcgtttttgctctgtcagtaatgaattactacatcattaattttgtcatgggatcaag 628
Query: 421 acacattactgagctgaaagaaattctgaatggatagggctgggcctgaactgctggtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acacattactgagctgaaagaaattctgaatggatagggctgggcctgaactgctggtgt 568
Query: 481 ggctaatggaattcagtcacatggaagttcctggatgtgggaaccctttcttcatgagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggctaatggaattcagtcacatggaagttcctggatgtgggaaccctttcttcatgagta 508
Query: 541 acctggccacagctagcagagatggtgagctgtatctgcctaagggaaggtgccctgcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acctggccacagctagcagagatggtgagctgtatctgcctaagggaaggtgccctgcct 448
Query: 601 atcacagggttccttgtgatacctttctgttccatatggcctttgttttcatccaggaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcacagggttccttgtgatacctttctgttccatatggcctttgttttcatccaggaga 388
Query: 661 gtggacccatgagggtactgcgat 684
|||||||||||| |||||||||||
Sbjct: 387 gtggacccatgaaggtactgcgat 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
