BAC Information

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BAC

Clone NameMSMg01-543L23
Chromosome17 (Build37)
Map Location 12,496,041 - 12,647,447
singlet/doubletdoublet
Overlap geneMap3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192
Upstream genePark2, Agpat4, Tdgf1-ps2
Downstream geneSlc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543L23.T7 (MSMg01no543_l23.b1)MSMg01-543L23.TJ (MSMg01no543_l23.g1)
ACCAG609210AG609211
length755757
length of high quality
(start - end)		668 (53 - 720)622 (81 - 702)
definitionCHROMAT_FILE: MSMg01no543_l23.b1 PHD_FILE: MSMg01no543_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:12 2005CHROMAT_FILE: MSMg01no543_l23.g1 PHD_FILE: MSMg01no543_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,646,784 - 12,647,447)(12,496,041 - 12,496,662)
sequence
GGGGTTGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTGCTGACTGCTCTTGATGGTGGATGTAATGTGACCT
TTGAGCTTCAACTGATGTGACTTCCCTACCATGATAGGCTGCATGCAAAC
TGGAATTATGAGTTAGGTTAACCCTTTCCTTCCCTAAGCTGCTTTCGCCC
TAGGGTATTTTATCTAGCCATGGGGAAAGAAACTGAGATATCTAGTATCA
ACCAGCAAGGTATCATTTCCCACTCCCCAGTTGTCTTACAGTGGCTTGTA
GCTCTGGGCTGCCATAGCAGCCTCGTGGCATTTCTATAGCGTGATGGTTG
ATGTGCCTCTTTGCGTTCTCTATACATCTCTCTAATGCTGCTTTTCCTAA
CAGCTCTGCGAATGAAGAGTGTTAAGCAGGTTTTTATTTAAGCAGACCTG
TCTGACTTGTAGCTAGCCCATGGGCTGCCTGTGGCCAAAGGAAAACTATG
AATACCTCTAAGAGAAGAATTCTGAACTCACTTAAATATTATGAGCTATA
TGTGTGATTTCTTTTTGTAACCCGATGGCCCCATTCTTTGAAGATGACAA
GCCTCCTGTCACATTGTCAAATGGTTGAACACACCTTACTGATTCCATTT
CTAAGAACCCATTAACACGATCCTCTGTCTTTGTATTCCTTTTAAGTTCA
GTAGTCAGAGCTAGAGTTTAATTGAGTTCAGGTTTGATATTTTTGGCAAG
CCTAC

NNNNNCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCCTCTTATGCCTTGGC
CCTCACCCACTGGCCTAACAGTAAAGAATGGATGCCAAGTCTCGGTGTAA
TTTCTGAGGGTTTCATGGTCTGATCATCTGCTAATCTCTATAAACAGATT
AATGGGTGACAAGATCATGTCTCTGCTGAGAGAAAGATGACAGCGCATAC
GATTTGCTCATGTTTCTGCTTTCTCTACTTATCCATCATGATTTGCACTC
AAGTCAATTAAGACTCATGCCTGCCAGGCACACATCTGTGAGGTGGTAGA
TTCTGTACACCCGTGCTTGTGCTTAATCACATCTGTAATGTGTGACCTGG
GTATGAGAGTTTCTAGTTCCACGTCTGAAACTCGGGTCTTCTTTGCCTCT
CACTGAATTTCCTACCTCTAGACAGCTAGGTCAAAGTCGATCACAATATG
TCTTACAGGAACTGTTTCGAATGCTTTACAAATAAACTGTGCTTCTATAA
AGTGGGAATTACCAAAACTGTCACAAATTAAGGGAAAATGAGCCTGTAGT
TCAATATCAGGGGAATAAGGGCCTGACTTTCAGAAACACTAAGAATTCAA
GTTCACAATCCTCAGGCAAATCTCTGGGAAACAAAACAAACTTTTATAAT
TGGCTTAGTGAAAACATTTCTCCTTGACTTTACCAAATAAACTCTGTAGA
GCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_l23.b1 MSMg01no543_l23.b1 CHROMAT_FILE:
MSMg01no543_l23.b1 PHD_FILE: MSMg01no543_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:12 2005
         (668 letters)



>mm_chr17_12646674_12647741
          Length = 1068

 Score = 1253 bits (648), Expect = 0.0
 Identities = 660/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgctgactgctcttgatggtggatgtaatgtgacctttgagcttcaactgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattcattgctgactgctcttgatggtggatgtaatgtgacctttgagcttcaactgat 715

                                                                       
Query: 65  gtgacttccctaccatgataggctgcatgcaaactggaattatgagttaggttaaccctt 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 714 gtgacttccctaccatgataggctacatgcaaactggaattatgagttaggttaaccctt 655

                                                                       
Query: 125 tccttccctaagctgctttcgccctagggtattttatctagccatggggaaagaaactga 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 654 tccttccctaagctgctttcgccctagggtattttatctagccatgtggaaagaaactga 595

                                                                       
Query: 185 gatatctagtatcaaccagcaaggtatcatttcccactccccagttgtcttacagtggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gatatctagtatcaaccagcaaggtatcatttcccactccccagttgtcttacagtggct 535

                                                                       
Query: 245 tgtagctctgggctgccatagcagcctcgtggcatttctatagcgtgatggttgatgtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtagctctgggctgccatagcagcctcgtggcatttctatagcgtgatggttgatgtgc 475

                                                                       
Query: 305 ctctttgcgttctctatacatctctctaatgctgcttttcctaacagctctgcgaatgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctctttgcgttctctatacatctctctaatgctgcttttcctaacagctctgcgaatgaa 415

                                                                       
Query: 365 gagtgttaagcaggtttttatttaagcagacctgtctgacttgtagctagcccatgggct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gagtgttaagcaggtttttatttaagcagacctgtctgacttgtagctagcccatgggct 355

                                                                       
Query: 425 gcctgtggccaaaggaaaactatgaatacctctaagagaagaattctgaactcacttaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcctgtggccaaaggaaaactatgaatacctctaagagaagaattctgaactcacttaaa 295

                                                                       
Query: 485 tattatgagctatatgtgtgatttctttttgtaacccgatggccccattctttgaagatg 544
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tattatgagctatgtgtgtgatttctttttgtaacccgatggccccattctttgaagatg 235

                                                                       
Query: 545 acaagcctcctgtcacattgtcaaatggttgaacacaccttactgattccatttctaaga 604
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 234 acaagcctcctgtcacattgtcaaatggttgaacacaccttgctgattccatttctaaga 175

                                                                       
Query: 605 acccattaacacgatcctctgtctttgtattccttttaagttcagtagtcagagctagag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 acccattaacacgatcctctgtctttgtattccttttaagttcagtagtcagagctagag 115

               
Query: 665 ttta 668
           ||||
Sbjct: 114 ttta 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_l23.g1 MSMg01no543_l23.g1 CHROMAT_FILE:
MSMg01no543_l23.g1 PHD_FILE: MSMg01no543_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:12 2005
         (622 letters)



>mm_chr17_12495841_12496862
          Length = 1022

 Score = 1156 bits (598), Expect = 0.0
 Identities = 616/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcctcttatgccttggccctcacccactggcctaacagtaaagaatggatgccaagt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cactcctcttatgccttggccctcacacactggcctaacagtaaagaatggatgccaagt 260

                                                                       
Query: 61  ctcggtgtaatttctgagggtttcatggtctgatcatctgctaatctctataaacagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcggtgtaatttctgagggtttcatggtctgatcatctgctaatctctataaacagatt 320

                                                                       
Query: 121 aatgggtgacaagatcatgtctctgctgagagaaagatgacagcgcatacgatttgctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgggtgacaagatcatgtctctgctgagagaaagatgacagcgcatacgatttgctca 380

                                                                       
Query: 181 tgtttctgctttctctacttatccatcatgatttgcactcaagtcaattaagactcatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttctgctttctctacttatccatcatgatttgcactcaagtcaattaagactcatgc 440

                                                                       
Query: 241 ctgccaggcacacatctgtgaggtggtagattctgtacacccgtgcttgtgcttaatcac 300
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 441 ctgccaggcacacatctgtgaggtggtagattctgtacacccatgctcgtgcttaatcac 500

                                                                       
Query: 301 atctgtaatgtgtgacctgggtatgagagtttctagttccacgtctgaaactcgggtctt 360
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 501 atctgtaatgtgtgacctgggtatgagagtttctagttccatgtctgaaactcgagtctt 560

                                                                       
Query: 361 ctttgcctctcactgaatttcctacctctagacagctaggtcaaagtcgatcacaatatg 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgcctctcactgaattttctacctctagacagctaggtcaaagtcgatcacaatatg 620

                                                                       
Query: 421 tcttacaggaactgtttcgaatgctttacaaataaactgtgcttctataaagtgggaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttacaggaactgtttcgaatgctttacaaataaactgtgcttctataaagtgggaatt 680

                                                                       
Query: 481 accaaaactgtcacaaattaagggaaaatgagcctgtagttcaatatcaggggaataagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaaaactgtcacaaattaagggaaaatgagcctgtagttcaatatcaggggaataagg 740

                                                                       
Query: 541 gcctgactttcagaaacactaagaattcaagttcacaatcctcaggcaaatctctgggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctgactttcagaaacactaagaattcaagttcacaatcctcaggcaaatctctgggaa 800

                                 
Query: 601 acaaaacaaacttttataattg 622
           ||||||||||||||||||||||
Sbjct: 801 acaaaacaaacttttataattg 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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