Query= MSMg01no543_m20.b1 MSMg01no543_m20.b1 CHROMAT_FILE:
MSMg01no543_m20.b1 PHD_FILE: MSMg01no543_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
(535 letters)
>mm_chr17_9622021_9622956
Length = 936
Score = 847 bits (438), Expect = 0.0
Identities = 466/482 (96%), Gaps = 12/482 (2%)
Strand = Plus / Minus
Query: 55 gccttgttgtattagagttgatactagttgcccacaagttcacctagctgcccacgatgt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gccttgttgtattagagttgatactagttgcccacaagttcacctagctgcccacgatgt 877
Query: 115 cacagctatttaaattccaatttaaatcctaaggaaagtattgtgtctttggcaaaaaca 174
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 cacagctatttaaattcgaatttaaatcctaaggaaagtattgtgtctttggcaaaaaca 817
Query: 175 ttcatgtaaaatttagtgatccttccatagtgaattgtggcacagtggagattctacatg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ttcatgtaaaatttagtgatccttccatagtgaattgtggcacagtggagattctacatg 757
Query: 235 cctgctggcatcacaaatatcttcctctaacctcttatagaacatgcatgtctactgcag 294
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 756 cctgctggcatcacaaatat-----------ctcttatagaacatgcatgtctactgcag 708
Query: 295 atgctgctgtccccagagagatgaaatgagtgtccatacttgtttctctggtttataaac 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 atgctgctgtccccagagagatgaaatgagtgtccatacttgtttctctggtttataaac 648
Query: 355 tatgacgattttttggcctgctttcaatactctgg-aaaaaaaatgaaaacagtagcctc 413
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 647 tatgacaattttttggcctgctttcaatactctggaaaaaaaaatgaaaacagtagcctc 588
Query: 414 attttaggatgttgtggcatgtgaaagcttctctgtcatgttctacatgtcagtgtttca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 attttaggatgttgtggcatgtgaaagcttctctgtcatgttctacatgtcagtgtttca 528
Query: 474 tgtgtacagtgaactgagactcagctgggtccagagaacagggtgagttaaatcaacaag 533
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 527 tgtgtgcagtgaactgagactcagctgggtccagagaacagggtgagttaagtcaacaag 468
Query: 534 gc 535
||
Sbjct: 467 gc 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_m20.g1 MSMg01no543_m20.g1 CHROMAT_FILE:
MSMg01no543_m20.g1 PHD_FILE: MSMg01no543_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
(547 letters)
>mm_chr17_9426743_9427690
Length = 948
Score = 1021 bits (528), Expect = 0.0
Identities = 543/548 (99%), Gaps = 1/548 (0%)
Strand = Plus / Plus
Query: 1 agtagcacaatttagaggtggcactgagtgttgccctggggaattcagtagcacaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagcacaatttagaggtggcactgagtgttgccctggggaattcagtagcacaattta 260
Query: 61 gaggtggcactgaagtaatgataagtaaacctgaagtggaagcaagggaaaatatcagag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gaggtggcactgaagtaatgataagtaaacctgaagtggtagcaagggaaaatatcagag 320
Query: 121 agagagccacccacccatcactaaatttcctgcctactgttttattttttgtctcttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagagccacccacccatcactaaatttcctgcctactgttttattttttgtctcttgct 380
Query: 181 catggcttcacttttaaaatacttccaatggtctacaaaaatgcatggataatataacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggcttcacttttaaaatacttccaatggtctacaaaaatgcatggataatataacca 440
Query: 241 tacttctgtagaagttaaaaaagatgttccttttaagtaagtgagaatttaaaagaaagt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttctgtagaagttaaaaaagatgttccttttaagtaagtgagaatttaaaagaaagt 500
Query: 301 aatttataaaaaa-tgctttttaatgcataaagaaatgagggcacatatattcaaacaaa 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttataaaaaaatgctttttaatgcataaagaaatgagggcacatatattcaaacaaa 560
Query: 360 cagcaaactctattataataaattatgattagttatgtgcttgccaccaattatatttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcaaactctattataataaattatgattagttatgtgcttgccaccaattatatttat 620
Query: 420 aagtgaaggaactttaattgcagtccacatgctttttcaggactgacagtttgaagctga 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgaacgaactttaattgcagtccacatgctttttcaggactgacagtttgaagctga 680
Query: 480 tgaataaggatggttgtgcctattaacgaaacaaacttattaaagttacaaatgccaact 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tgaataaggatggttgtgcctattaacgacacaaacttattaaagttacaaatgccaact 740
Query: 540 gattcagg 547
||||||||
Sbjct: 741 gattcagg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space: 503706
Effective search space used: 503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
