BAC Information

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BAC

Clone NameMSMg01-545D14
Chromosome17 (Build37)
Map Location 10,276,251 - 10,276,939
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545D14.T7 (MSMg01no545_d14.b1)MSMg01-545D14.TJ (MSMg01no545_d14.g1)
ACCAG610337AG610338
length7331,153
length of high quality
(start - end)		693 (36 - 728)---
definitionCHROMAT_FILE: MSMg01no545_d14.b1 PHD_FILE: MSMg01no545_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:08 2005CHROMAT_FILE: MSMg01no545_d14.g1 PHD_FILE: MSMg01no545_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCT
TCATAAGGTGTTTCCCAGCATATCCATATCCCTACCTAGAACTTTATAGG
ATGAATGACTAACAAAGGAACAAGTGGGTTGTGTGTGTTCATATGCATAC
ATGTGTGTATATACATATATAAGGCATCAGCACACTTTTATTGAAAACTA
CAATGTGAAAATTGTCAATACAAACTGTTGGTCTTTTGAAGGGTGACCCT
AGATGTCTGTTTGCTCTGGGACAATTCATGTACCGTTTTTATGACTTAGC
TCCCTTGATAGTACAACCTACCCATGGGAATTTAGAAGAGCAGAGGAATT
TAAATGAGTGCACTGTAGGCACTCAAAGGCATTAGAGCAACCACTCTGGC
TCTCTGCCCAACTTACTTGTAGGAATGGAGCTGAACTTCTCTTAGTAATA
TAACCATAGGATAGGGGTCACAATGTCACCATCTTTACAATCAGGTTCTT
CTGCCCCAGAGGGATACCATCCTCTGGGCCTCTCTTTTCCCAGAGGTTTA
ACCTCACCCATTAGGCTTGAACCCCTGATCATGGAAAGTATGTGGGAGCA
TTCTCTCCAGTCGGGAAATATCCCCAAGTCATCGGACCATGTTTTGATTG
ACTGCAAGGCAACACCTTGGGTTTGTGGCATGATAGATGTGACTTTAAGG
ATAGAAAGCAAGACATTGGCATGCCCAAGGCAA

GTGGGGTTCGCGGAGGGNGTGTTGGGTTTTCCTAAAAAAGGGGGGGGGAG
GNGAAGGAAAGTTTTTTCACAAAAAAAGAGGGGGGGGNAGAAGGAAGATT
TCAGGAGGCTTGTAATTTGCCAGTTCCGCTAGTAATGTGATGTCCTTTAT
TAAAGAGACGCGCGATGGGTTGTGGGTTGTTTCCGCGTCCGCGCCGCATG
GCCTAGTTTGTGAGGGCGGGGGGGCGCCATCTGCCCCCTCAGCGTAGGTT
GTGATAGCTGTCATATTAATTGTATATTCCGCCTTACTTCTCCTGCACCT
TGCGCGCATTATTTTTTCATGTGCTGATGTCGCTTTAGGCGAACACGTTT
ATATTTATAAAATAAATGTGTGGAAAGATAGTAATCATATATATNTACAC
CCATTATGGTATTATATCCCTCCTTTTTTTTTTCTTTCCTGTTATTTAGC
GCCTCCTATCATTACCTCAATTACACATACACTATACCACCTCTCTTATT
TCAAATTTTATGTGTACGATTTGAAGACAGAAATAAATATCTAAATACCC
CACTTTTCATATAGCTCATCTCTTTGTCGCACCACGCGATTGGGCGCGCG
TGCGGTGGGGTAGAATGTTTGGTAATAAGTTGATTACCGAGTGAATCACT
TGTAATATATGGACACATTATGTAAACATTATAATCTCTATGAGAAGCAG
AAACGACATTACTACTTTGAAATGTCGAAGCATCGGCTCTTGTTTGTATC
ATTGTGACGCCCGTGTCATGCTCCGCCGGTTTACACTTTATTTTACCTTG
ACTATAAACACTCAGTTTATATCATCGATTGCTACGCCGATATTAGCAGC
GCTGGAGTGTGCCGCCATGTTTTAGATCTGCCTATGTATCTCCGTTGTTC
GTCAATCTATATGCTGTATACTCAACTCGCCTATTATACTAAACTTCGCA
CATCCAAACACATGGACTTGTCATATAATTAGCGTGCGAACCATTACGGA
AATATAATACTTTGGTTGCCACCCATACTTCGCGCTCGTGCGGCAATTGT
AGACGATGTTTGTCGTGATTGATGACATGTGTTGTGTGGTATAGTGACAG
AGTATTGTTATCACTCACAACGACAGGCCAAGAGTCCTCTCTCATCTTCT
ATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_d14.b1 MSMg01no545_d14.b1 CHROMAT_FILE:
MSMg01no545_d14.b1 PHD_FILE: MSMg01no545_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:08 2005
         (693 letters)



>mm_chr17_10276047_10277139
          Length = 1093

 Score = 1301 bits (673), Expect = 0.0
 Identities = 685/689 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcttcataaggtgtttcccagcatatccatatccctacctagaactttatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcttcataaggtgtttcccagcatatccatatccctacctagaactttatag 264

                                                                       
Query: 65  gatgaatgactaacaaaggaacaagtgggttgtgtgtgttcatatgcatacatgtgtgta 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 gatgaatgactaacaaaggaacaagtgggttgtatgtgttcatatgcatacatgtgtgta 324

                                                                       
Query: 125 tatacatatataaggcatcagcacacttttattgaaaactacaatgtgaaaattgtcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatacatatataaggcatcagcacacttttattgaaaactacaatgtgaaaattgtcaat 384

                                                                       
Query: 185 acaaactgttggtcttttgaagggtgaccctagatgtctgtttgctctgggacaattcat 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaactgttggacttttgaagggtgaccctagatgtctgtttgctctgggacaattcat 444

                                                                       
Query: 245 gtaccgtttttatgacttagctcccttgatagtacaacctacccatgggaatttagaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaccgtttttatgacttagctcccttgatagtacaacctacccatgggaatttagaaga 504

                                                                       
Query: 305 gcagaggaatttaaatgagtgcactgtaggcactcaaaggcattagagcaaccactctgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagaggaatttaaatgagtgcactgtaggcactcaaaggcattagagcaaccactctgg 564

                                                                       
Query: 365 ctctctgcccaacttacttgtaggaatggagctgaacttctcttagtaatataaccatag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 ctctctgcccaacttacttgtaggaatggagctgaacttctcttagtaatatagccatag 624

                                                                       
Query: 425 gataggggtcacaatgtcaccatctttacaatcaggttcttctgccccagagggatacca 484
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 gataggggtcacaatgtcaccatctttacaatcaggtccttctgccccagagggatacca 684

                                                                       
Query: 485 tcctctgggcctctcttttcccagaggtttaacctcacccattaggcttgaacccctgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctctgggcctctcttttcccagaggtttaacctcacccattaggcttgaacccctgat 744

                                                                       
Query: 545 catggaaagtatgtgggagcattctctccagtcgggaaatatccccaagtcatcggacca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catggaaagtatgtgggagcattctctccagtcgggaaatatccccaagtcatcggacca 804

                                                                       
Query: 605 tgttttgattgactgcaaggcaacaccttgggtttgtggcatgatagatgtgactttaag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgttttgattgactgcaaggcaacaccttgggtttgtggcatgatagatgtgactttaag 864

                                        
Query: 665 gatagaaagcaagacattggcatgcccaa 693
           |||||||||||||||||||||||||||||
Sbjct: 865 gatagaaagcaagacattggcatgcccaa 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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