Query= MSMg01no545_i16.b1 MSMg01no545_i16.b1 CHROMAT_FILE:
MSMg01no545_i16.b1 PHD_FILE: MSMg01no545_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:32 2005
(612 letters)
>mm_chr17_61711482_61712493
Length = 1012
Score = 1067 bits (552), Expect = 0.0
Identities = 594/608 (97%), Gaps = 3/608 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaatggtcatatagtttaaagatgctcccctatggcagggaaaaataacttct 64
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtggtcatatagtttagagatgctcccctatggcagggaaaaataacttct 264
Query: 65 acttggaggtgtcacctgacatccaaggacttttattttttactacctatcctggctatt 124
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttggaggtgccacctgacatccaaggacttttattttttactacctatcctggctatt 324
Query: 125 gaatatatgatacttagaaagcaactggtgttagattgccttttgaaattaaatgggtgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatatatgatacttagaaagcaactggtgttagattgccttttgaaattaaatgggtgt 384
Query: 185 gctggctactcatatcaacttgacacaagcaagagttatctgaaaggaaggaacctcagt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctggctactcatatcagcttgacacaagcaagagttatctgaaaggaaggaacctcagt 444
Query: 245 taagaaaatgcttccacccactcaacaaaagaacatacatggtatgcactcactgataca 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 445 taagaaaatgcttccacccactcaacaaaagaacacacatggtatgcactcactgttaca 504
Query: 305 tcatggatattagcccaaaagcttggaatattcaagatgatacaattcacagaccacatg 364
||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||
Sbjct: 505 tcatggatattagcccaaaagtttggaatat-caa-a-gatacaattcacagaccacatg 561
Query: 365 aaacttaagaagaaggaagaccaaagtgtgggtgctttggcccttcttagaagggggaac 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 aaacttaagaagaaggaagaccaaagtgtgggtgctttggcccttcttagaacggggaac 621
Query: 425 aaaataatcatgggaggagattcagagacaaagtgtggaacagagactgaaggaaatgcc 484
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 622 aaaataatcatgggaggagattcagagacaaagtgtggaacagagactaaaggaaatgcc 681
Query: 485 atccagagactaccccacctggggatccatcccatatacagttgccaaacatggatgctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atccagagactaccccacctggggatccatcccatatacagttgccaaacatggatgctg 741
Query: 545 ggaagtgcttgctgatgggagcctgatatgactgtctcctgagacactctgccagagcct 604
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 ggaagtgcttgctgatgggagcctgatatgattgtctcctgagacactctgccagagcct 801
Query: 605 gacaaata 612
||||||||
Sbjct: 802 gacaaata 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_i16.g1 MSMg01no545_i16.g1 CHROMAT_FILE:
MSMg01no545_i16.g1 PHD_FILE: MSMg01no545_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:32 2005
(649 letters)
>mm_chr17_61755773_61756821
Length = 1049
Score = 946 bits (489), Expect = 0.0
Identities = 580/649 (89%), Gaps = 61/649 (9%)
Strand = Plus / Minus
Query: 1 attctaaggataaaagaatgtttcaacacatataactagaaactataatacaatgtatta 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 658 attctaaggataaaagaatgcttcaacacatataactagaaactataatacaatgtatta 599
Query: 61 attggatgaaagaaaaatgatcacatcaataaatacaaaattatcttttgcaaaatccaa 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 598 attggatgaaagaaaaatgatcccgtcaataaatacaaaattatcttttgcaaaatccaa 539
Query: 121 tatccatacacacatacaaatacagtcttttcaatgaagagtgctagaaactgagttatc 180
|||| |
Sbjct: 538 tatc-------------------------------------------------------c 534
Query: 181 atacacacatacaaatacagtcttttcaatgaagtgtgctagaaattgagttatcataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atacacacatacaaatacagtcttttcaatgaagtgtgctagaaattgagttatcataca 474
Query: 241 ttctctcattatatgtaaaatttaattaagatgttctgaagaaaccacagcaattcaaaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttctctcattataggtaaaatttaattaagatgttctgaagaaaccacagcaattcaaaa 414
Query: 301 attacaggaaaagaaaaatgtttgtgatattggtacctcaaaaaccttacaaaatgatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attacaggaaaagaaaaatgtttgtgatattggtacctcaaaaaccttacaaaatgatag 354
Query: 361 aaaataaaaacaggcaaaagcaaagacatcctaggaaacagattttaagcacaaaataaa 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 353 aaaataaaaacaggcaaaagcaaagacatcataggaaacagattttaagcacaaaataaa 294
Query: 421 caaaatagaaacacgactgcctatattacagaagataatatttgcaacctacacatttga 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 293 caaaatagaaacacgactgcctatattacagaagataatatttgcaacctccacatttga 234
Query: 481 taaggggttaatattgaaaatatatacagaattaaaactcacacagaaaacaacacaatt 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 233 taaggggttaatattgaaaatatatacagaattcaaactcacacagaaaacaacacaatt 174
Query: 541 atatgtgagctaaaaggactagagggatagcttacttacgtaagtgttggcctgattccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atatgtgagctaaaaggactagagggatagcttacttacgtaagtgttggcctgattccc 114
Query: 601 accactcatgtgaaatgatatatgtattagtatgtaactaattccagtg 649
||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 113 accactcatgtgagatgat----gt--tagtatgtaactaattccagtg 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
