BAC Information

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BAC

Clone NameMSMg01-548F19
Chromosome17 (Build37)
Map Location 47,328,987 - 47,329,355
singlet/doubletsinglet
Overlap genenone
Upstream genePolh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548F19.T7 (MSMg01no548_f19.b1)MSMg01-548F19.TJ (MSMg01no548_f19.g1)
ACCAG612726AG612727
length754762
length of high quality
(start - end)
374 (46 - 419)369 (75 - 443)
definitionCHROMAT_FILE: MSMg01no548_f19.b1 PHD_FILE: MSMg01no548_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:15 2005CHROMAT_FILE: MSMg01no548_f19.g1 PHD_FILE: MSMg01no548_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTCCTCTTTGGGTTCCTCAAATTTTCTCCCAGCTCTTCCATAA
GATGCTCTGAGCCCCATCTAATGTTTGAGTGTGAGTCTCTGCATCTCTTT
CCATTGGCTGCTGGGTGGAGCCTCTGAGAGGACAGTTATGCTAAGTTCCT
GTCTGCAAGCATAATAGAGTATCATTAATAATGTCAGGGATTGGTTCTTG
CCCATGGGATGGGTCTCAATTTGGGGCAGTCATTGGTTGGCCATTCCCTC
AGTCTCTGCTCTATCTTTGTCCCTGCCCATCTTGTGGGCAAGACATATTT
GGGTCAAAGGCTTTGTGGGTGGGGTTCTGTCCTTATCCTTACAATGGGAG
TCCTGCCTGGCTATAGGAAATAGTCACCTCAGAATTCATATCCCCTACTA
CTAGAATTCTCAGCTAGAGATGCCCCCTTACACCCTCTAGGAACTTTGCC
CGTCCCAGGTCTCTGGCAAGTCCTATAGATTGCCCCCATCTTCATCCAAT
CTCCCTTCTCTTGTCTCTGCTCCCCCTATTTCAGAACCTCTCACTCCTTA
CCCACTCTCCTTCCAATTCCCTTTTTCCATCCTATTCCCTCCCTTCCATT
TAAATGGCAATTATTTAACTTTGTTTTCCCCTTCTTAATAAAAATTCCTA
AATATCCCCCCTCTGGCTCCATCTCTTTGTTATATTGGCTTCCCACTCTT
GTTC
AATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACACCCAGCACGTGAATGTGTGCACA
GAAGGAAGATGAGTAGATGAGCTTGGCCTCCCTCCTGTAGGGTGCAGAGG
GCTTGCACCCCACTTCATCACAGGGGCTTCATATAGCACACAGTACATGA
ATTCACTCTGCACTGGCTTACCGTGTGGTGTCTGTGGGCTCAGCTGCAAT
GGAGGCTCACAGGGGCCCATAGTAGGGGCCATACCCTTAGGAAGGTAGTG
CACGGTGACACCTAGTAACTCAAGGAGAGGAGGCTGTGTTCTCACAAAAT
CATGTGACAACTGGGATGAGGGAAAGACAGACTTCAGAAGACCCCGACAT
CAAAGAGGCAGAAGCTAAGGGCATCCCGTGATCTCCAGGGCCTTTAGGAA
ACACCATCCATATGTGGGTACTACAGTTCTGAATGTCTCCTAAATGTGGA
TTTCAAACTATCATACCATCCCCATAACTACTGCCTAAGTGTCAGATTGC
CAAATTCCATAAAGCCATGGTCCCTTCATCCAAACTGTCAAATCATATTG
ACCTTCAAAAAACCTGGGGCCCAAATGGGGAACCTTGGGAAAACCCACCC
ATGTTTGTCCAAAAAACAAAGTATTGGGAGACCCCTGCTATCTAGGCTTA
CTCTTGTGGGTTCCATGGAAACCCCACCTCAAAAACAAGAATTCGCCCCT
ACATATATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_f19.g1 MSMg01no548_f19.g1 CHROMAT_FILE:
MSMg01no548_f19.g1 PHD_FILE: MSMg01no548_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:15 2005
         (369 letters)



>mm_chr17_47328787_47329555
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacccagcacgtgaatgtgtgcacagaaggaagatgagtagatgagcttggcctccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acacccagcacgtgaatgtgtgcacagaaggaagatgagtagatgagcttggcctccctc 510

                                                                       
Query: 61  ctgtagggtgcagagggcttgcaccccacttcatcacaggggcttcatatagcacacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctgtagggtgcagagggcttgcaccccacttcatcacaggggcttcatatagcacacagt 450

                                                                       
Query: 121 acatgaattcactctgcactggcttaccgtgtggtgtctgtgggctcagctgcaatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acatgaattcactctgcactggcttaccgtgtggtgtctgtgggctcagctgcaatggag 390

                                                                       
Query: 181 gctcacaggggcccatagtaggggccatacccttaggaaggtagtgcacggtgacaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctcacaggggcccatagtaggggccatacccttaggaaggtagtgcacggtgacaccta 330

                                                                       
Query: 241 gtaactcaaggagaggaggctgtgttctcacaaaatcatgtgacaactgggatgagggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtaactcaaggagaggaggctgtgttctcacaaaatcatgtgacaactgggatgagggaa 270

                                                                       
Query: 301 agacagacttcagaagaccccgacatcaaagaggcagaagctaagggcatcccgtgatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 269 agacagacttcagaagaccccgacatcaaagaggcagaagctaagggcatcccatgatct 210

                    
Query: 361 ccagggcct 369
           |||||||||
Sbjct: 209 ccagggcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)