BAC Information

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BAC

Clone NameB6Ng01-001A09
Chromosome18 (Build37)
Map Location 89,178,172 - 89,179,281
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A09.g
ACCDH839460
length1,101
definitionDH839460|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatcttaaaaggagaacacaaatcaatttctgctcaaataaatt
aagttggaattgaattagtgttatactgtttcatgtgtagttattaatcc
ctgcattgcatgcttatatatgtcagagaaaaagtttctgtcctcaggag
tgtgttggcttcattctttacttcatagaagtggtgtaattctgggtata
agaggacaaaagtaaccaatctcccagactgggacaaggaggccatattt
ggacttgagacattttgggcagagagaaattgaattgaagaaaacatgat
atgttgatgtgatggaaaatacaactttcttgtgaaaaaaatccatagat
ttttgatagagaattaataagataggctcaactaacattatagtatacag
tttgttttttttttaaacaaatattagaaaatattaacttaatatttttt
ttcttcatcaaggcgagtgagtttttgccagagtccatgtcagcagcatt
attttttgtctccttggacatgcctatttctttggaatatccagagattc
atgacacagttgtggcttatttggaacagctggattctgaaaattacagc
atttataagcgaactgcagaggctgtttattcaattgaatgcacctgtaa
cttcctatctgatgtggggaaagaggtaaaatattttaaaaataatctct
taaatctttttcctgaagtgtttagaaaatctaacttacagagttccaac
tgatagatatacaacaagtgaatttggttgttgatatgtgataaaaaata
tcatacattttgactggaagtagtctctagtctgattaaaatagagatat
aatttgtacaaaggtaacacagagacattagggttctgaatagtgtattc
tcatagaattagccgttttcgaacataactcttctgtcttccacataaga
gcagtacttgttcattgtcttacattttgggaactgagtgatgactgata
atcaaatttgaaaggtttgttatgcttacttagagcatcgtaataaattt
tgtttatcttttaagacatttactacatgtcttcatgaagaattgatatt
t
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89178172_89179281
seq2: B6Ng01-001A09.g_66_1166

seq1  GAATTCCATCTTAAAAGGAGAACACAAATCAATTTCTGCTCAAATAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTAAAAGGAGAACACAAATCAATTTCTGCTCAAATAAATT  50

seq1  AAGTTGGAATTGAATTAGTGTTATACTGTTTCATGTGTAGTTATTAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAATTGAATTAGTGTTATACTGTTTCATGTGTAGTTATTAATCC  100

seq1  CTGCATTGCATGCTTATATATGTCAGAGAAAAAGTTTCTGTCCTCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGCATGCTTATATATGTCAGAGAAAAAGTTTCTGTCCTCAGGAG  150

seq1  TGTGTTGGCTTCATTCTTTACTTCATAGAAGTGGTGTAATTCTGGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGCTTCATTCTTTACTTCATAGAAGTGGTGTAATTCTGGGTATA  200

seq1  AGAGGACAAAAGTAACCAATCTCCCAGACTGGGACAAGGAGGCCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAAAAGTAACCAATCTCCCAGACTGGGACAAGGAGGCCATATTT  250

seq1  GGACTTGAGACATTTTGGGCAGAGAGAAATTGAATTGAAGAAAACATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGAGACATTTTGGGCAGAGAGAAATTGAATTGAAGAAAACATGAT  300

seq1  ATGTTGATGTGATGGAAAATACAACTTTCTTGTGAAAAAAATCCATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGTGATGGAAAATACAACTTTCTTGTGAAAAAAATCCATAGAT  350

seq1  TTTTGATAGAGAATTAATAAGATAGGCTCAACTAACATTATAGTATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAGAGAATTAATAAGATAGGCTCAACTAACATTATAGTATACAG  400

seq1  TTTGTTTTTTTTTTAAACAAATATTAGAAAATATTAACTTAATATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTAAACAAATATTAGAAAATATTAACTTAATATTTTTT  450

seq1  TTCTTCATCAAGGCGAGTGAGTTTTTGCCAGAGTCCATGTCAGCAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCAAGGCGAGTGAGTTTTTGCCAGAGTCCATGTCAGCAGCATT  500

seq1  ATTTTTTGTCTCCTTGGACATGCCTATTTCTTTGGAATATCCAGAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTCTCCTTGGACATGCCTATTTCTTTGGAATATCCAGAGATTC  550

seq1  ATGACACAGTTGTGGCTTATTTGGAACAGCTGGATTCTGAAAATTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGTTGTGGCTTATTTGGAACAGCTGGATTCTGAAAATTACAGC  600

seq1  ATTTATAAGCGAACTGCAGAGGCTGTTTATTCAATTGAATGCACCTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAGCGAACTGCAGAGGCTGTTTATTCAATTGAATGCACCTGTAA  650

seq1  CTTCCTATCTGATGTGGGGAAAGAGGTAAAATATTTTAAAAATAATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATCTGATGTGGGGAAAGAGGTAAAATATTTTAAAAATAATCTCT  700

seq1  TAAATCTTTTTCCTGAAGTGTTTAGAAAATCTAACTTACAGAGTTCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTTTCCTGAAGTGTTTAGAAAATCTAACTTACAGAGTTCCAAC  750

seq1  TGATAGATATACAACAAGTGAA-TTGGTTGTTGATATGTGAT-AAAAATA  798
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TGATAGATATACAACAAGTGAATTTGGTTGTTGATATGTGATAAAAAATA  800

seq1  TCATACATTTTGACTGG-AGTAGTCTCTAGTCTGATTAAAATAGAGATAT  847
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATACATTTTGACTGGAAGTAGTCTCTAGTCTGATTAAAATAGAGATAT  850

seq1  AATTTGTACAAAGGTAACACAGAGACATTAGGGTTCTGAATAGTGTATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTACAAAGGTAACACAGAGACATTAGGGTTCTGAATAGTGTATTC  900

seq1  TCATAGAATTAGCCGTTTTCGAAACATAACTCTTCTGTCTTCCACATAAG  947
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATAGAATTAGCCGTTTTCG-AACATAACTCTTCTGTCTTCCACATAAG  949

seq1  AGCAAGTACTTGTATCAATGTCTTACATTTTGGGAACTGAGTGATGACTG  997
      ||| ||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  AGC-AGTACTTGT-TCATTGTCTTACATTTTGGGAACTGAGTGATGACTG  997

seq1  ATTAATCAGAATTATGAGAGGTATGTTAATGCATACTTAGAGACTCGTAG  1047
      | |||||| |||| ||| |||| |||| |||| |||||||||  ||||| 
seq2  A-TAATCA-AATT-TGAAAGGTTTGTT-ATGCTTACTTAGAGCATCGTA-  1042

seq1  ATAAAATTTTGTTTTAATCTTTTATGACATTTACTACATGTCTTCATGAA  1097
      || |||||||||||  |||||||| |||||||||||||||||||||||||
seq2  AT-AAATTTTGTTT--ATCTTTTAAGACATTTACTACATGTCTTCATGAA  1089

seq1  GAATCTGATATTT  1110
      |||| ||||||||
seq2  GAAT-TGATATTT  1101