BAC Information

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BAC

Clone NameB6Ng01-002B05
Chromosome18 (Build37)
Map Location 65,754,386 - 65,899,431
singlet/doubletdoublet
Overlap geneZfp532, 5330437I02Rik
Upstream geneAtp8b1, LOC629480, Nedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820
Downstream geneSec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002B05.bB6Ng01-002B05.g
ACCDH840210DH840211
length1,002491
definitionDH840210|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B05, 5' end.DH840211|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,754,386 - 65,755,383)(65,898,924 - 65,899,431)
sequence
gaattcagagacccgtctgcctctcgtgtgctgagatcaaccgccacatg
ctgcaggccttctcatatagtcatttttgtatgtgtttgcttggcgtgta
ggcgctgacagtatctggtaaggtcatgtctgatgggagctcggcacttg
gcgtggtagtgatgggactgtgctggttttattgacaggtcagagttaca
catgttcctctaatcctaagtgttaggatatccttggccccagctgagtt
tcaaatggaactatagggtctgtggttacactgggctccagtttcaggtc
attgagggtaggaaaattcttcctccgttttacttcttagaagactgggc
caaagtgaatatttgttaagggggcttaaggacaatctttgtcaccctgt
ggattgctgggaattctggtggtatctgccttggtattgcctgttgggag
tgtgaccattgtggcttagtttgttctaggactctctctctctctctctc
tctctctctctctctctctgttagaaccccaacagtgacctcttgttttt
tgttttccagtgaggatattactacatagctctggctagccttgaactcc
tcctgatgcttctgcctcatttccggtcccctagcctggccactgtgagc
tgctttgctattgccgtgacgcacatttagaaagggctgtgttctaggtt
ctgtagtgaatgcttacttggcttctttggttgttgttgtttagatttag
attttattttatgagtgtggctgtttgcctgcatccgcccccggaccggg
gtttgcagacaggccgcatagagtgtcaagggctcccttgggtctatatt
tctagtttgtgttgatctgtttggtttttttttttttactgcattgaact
gatcttgtggcttttttaagagcttctgtaactttttttcttattttttt
gagttatttgagggtttacttaaggaagcgagtgggtttggagaaatggc
tc
caagaggggaattccaagagggttctttcccttgcctggttcccactcac
aacttgaggtgggagttgcgggggggaaaatgtgttgttttgagagtaag
cacttggctcatgcccagggttcccaccagaacctacatggacacttggc
caaagccacaggggtgggggagggaggagcccacccactctccactcttg
tgggaaacagggccagctgatgtcgacatgttttatcccatataaggcga
tacctagggacaaattttctgtcactcgggttcccggggcccaagggagc
ccaaacttccccaacagagggaagttttgtccaccattaaacagacgctt
ttgccatggagaaagtatgaatggtcaggcttgagagccatggcatctag
gcttccaaaaaattaaggtgggctcccactcaaaggatcaactggttcct
gtccttatccctgattttctctctctctctctctctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65754386_65755383
seq2: B6Ng01-002B05.b_44_1045

seq1  GAATTCAGAGACCCGTCTGCCTCTCGTGTGCTGAGATCAACCGCCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACCCGTCTGCCTCTCGTGTGCTGAGATCAACCGCCACATG  50

seq1  CTGCAGGCCTTCTCATATAGTCATTTTTGTATGTGTTTGCTTGGCGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCCTTCTCATATAGTCATTTTTGTATGTGTTTGCTTGGCGTGTA  100

seq1  GGCGCTGACAGTATCTGGTAAGGTCATGTCTGATGGGAGCTCGGCACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGACAGTATCTGGTAAGGTCATGTCTGATGGGAGCTCGGCACTTG  150

seq1  GCGTGGTAGTGATGGGACTGTGCTGGTTTTATTGACAGGTCAGAGTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTAGTGATGGGACTGTGCTGGTTTTATTGACAGGTCAGAGTTACA  200

seq1  CATGTTCCTCTAATCCTAAGTGTTAGGATATCCTTGGCCCCAGCTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCTCTAATCCTAAGTGTTAGGATATCCTTGGCCCCAGCTGAGTT  250

seq1  TCAAATGGAACTATAGGGTCTGTGGTTACACTGGGCTCCAGTTTCAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGAACTATAGGGTCTGTGGTTACACTGGGCTCCAGTTTCAGGTC  300

seq1  ATTGAGGGTAGGAAAATTCTTCCTCCGTTTTACTTCTTAGAAGACTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGTAGGAAAATTCTTCCTCCGTTTTACTTCTTAGAAGACTGGGC  350

seq1  CAAAGTGAATATTTGTTAAGGGGGCTTAAGGACAATCTTTGTCACCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAATATTTGTTAAGGGGGCTTAAGGACAATCTTTGTCACCCTGT  400

seq1  GGATTGCTGGGAATTCTGGTGGTATCTGCCTTGGTATTGCCTGTTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCTGGGAATTCTGGTGGTATCTGCCTTGGTATTGCCTGTTGGGAG  450

seq1  TGTGACCATTGTGGCTTAGTTTGTTCTAGGACTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCATTGTGGCTTAGTTTGTTCTAGGACTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTCTCTCTCTCTCTCTGTTAGAACCCCAACAGTGACCTCTTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTTAGAACCCCAACAGTGACCTCTTGTTTTT  550

seq1  TGTTTTCCAGTGAGGATATTACTACATAGCTCTGGCTAGCCTTGAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAGTGAGGATATTACTACATAGCTCTGGCTAGCCTTGAACTCC  600

seq1  TCCTGATGCTTCTGCCTCATTTCCGGTCCCCTAGCCTGGCCACTGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCTTCTGCCTCATTTCCGGTCCCCTAGCCTGGCCACTGTGAGC  650

seq1  TGCTTTGCTATTGCCGTGACGCACATTTAGAAAGGGCTGTGTTCTAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTATTGCCGTGACGCACATTTAGAAAGGGCTGTGTTCTAGGTT  700

seq1  CTGTAGTGAATGCTTACTTGGCTTCTTTGGTTGTTGTTGTTTAGATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGAATGCTTACTTGGCTTCTTTGGTTGTTGTTGTTTAGATTTAG  750

seq1  A-TTTATTTTATGAGTGTGGCTGTTTGCCTGCATCTGAGTGC-GTTGTGG  798
      | ||||||||||||||||||||||||||||||||| |    | |    ||
seq2  ATTTTATTTTATGAGTGTGGCTGTTTGCCTGCATCCGCCCCCGGACCGGG  800

seq1  GTCTGCAGACAGGCCGCAGAGAGTGTCAA-GGCT-CCTTGGGCCTAAAGT  846
      || ||||||||||||||| |||||||||| |||| ||||||| ||| | |
seq2  GTTTGCAGACAGGCCGCATAGAGTGTCAAGGGCTCCCTTGGGTCTATATT  850

seq1  TCTAGGTGGTGGTGAGCTGCTAGG-AGCTGCTAGGTCAGTGCAGGGAACT  895
      ||||| | ||| ||| ||| | ||    |  |   | | ||||  |||||
seq2  TCTAGTTTGTGTTGATCTGTTTGGTTTTTTTTTTTTTACTGCATTGAACT  900

seq1  GAACCTGAGGCTTCTGCAAGAGCAGCCAGTAACATTTATTCTCATTTTTA  945
      || | || ||||| |  ||||||   | ||||| ||| |||| |||||| 
seq2  GATCTTGTGGCTTTTTTAAGAGC-TTCTGTAACTTTTTTTCTTATTTTTT  949

seq1  AGAGTTATTTGAGGGTTAACTAAAGGAAGTGAGTGGGTTTGGAGAGATGG  995
       |||||||||||||||| ||| ||||||| ||||||||||||||| ||||
seq2  TGAGTTATTTGAGGGTTTACTTAAGGAAGCGAGTGGGTTTGGAGAAATGG  999

seq1  CTC  998
      |||
seq2  CTC  1002

seq1: chr18_65898924_65899431
seq2: B6Ng01-002B05.g_68_564 (reverse)

seq1  AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCAGGGATAAGG  50
                 ||||||||||||||||||||||| |||||||||||||||
seq2  ----------AAGAGAGAGAGAGAGAGAGAGAGA-AAATCAGGGATAAGG  39

seq1  ACAGGAGCCAGTTGCTCCTTTGAGTGGGAGCCCACCTTAATTTTTTGGAA  100
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGGAACCAGTTGATCCTTTGAGTGGGAGCCCACCTTAATTTTTTGGAA  89

seq1  GCCTAGATGCCATGGCTCTCAAGCCTGACCATTCATACTTTCTCCATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATGCCATGGCTCTCAAGCCTGACCATTCATACTTTCTCCATGGC  139

seq1  AAAAGCGTCTGTTTAATGGTGGACAAAACTTCCCTCTGTTGGGGAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCGTCTGTTTAATGGTGGACAAAACTTCCCTCTGTTGGGGAAGTTT  189

seq1  GGGCTCCCTTGGGCCCCGGGAACCCGAGTGACAGAAAATTTGTCCCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTTGGGCCCCGGGAACCCGAGTGACAGAAAATTTGTCCCTAGG  239

seq1  TATCGCCTTATATGGGATAAAACATGTCGACATCAGCTGGCCCTGTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCCTTATATGGGATAAAACATGTCGACATCAGCTGGCCCTGTTTCC  289

seq1  CACAAGAGTGGAGAGTGGGTGGGCTCCTCCCTCCCCCACCCCTGTGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGTGGAGAGTGGGTGGGCTCCTCCCTCCCCCACCCCTGTGGCTT  339

seq1  TGGCCAAGTGTCCATGTAGGTTCTGGTGGGAACCCTGGGCATGAGCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGTGTCCATGTAGGTTCTGGTGGGAACCCTGGGCATGAGCCAAG  389

seq1  TGCTTACTCTCAAAACAACACATTTTCCCCCCCGCAACTCCCACCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTCTCAAAACAACACATTTTCCCCCCCGCAACTCCCACCTCAAG  439

seq1  TTGTGAGTGGGAACCAGGCAAGGGAAAGAACCCTCTTGGAATTCCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTGGGAACCAGGCAAGGGAAAGAACCCTCTTGGAATTCCCCTCT  489

seq1  TGGAATTC  508
      ||||||||
seq2  TGGAATTC  497