BAC Information

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BAC

Clone NameB6Ng01-003L06
Chromosome16 (Build37)18 (Build37)
Map Location 60,776,447 - 60,776,67685,133,192 - 85,134,280
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L06.bB6Ng01-003L06.g
ACCDH841331DH841332
length6801,068
definitionDH841331|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L06, 5' end.DH841332|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,776,447 - 60,776,676)(85,133,192 - 85,134,280)
sequence
gaattcctgatctttccacgacttttatcatgaatgggtgttggattttg
tcaaatgctttctccgagtctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatataatgaattacgttgatgaatttacatatattaaaac
atccccgcatccctggaatgaaacctacttggtcaggtgtggagagccgt
gagcaatcgcctttacaagacggtgctggcctcagctgtgcctactggtg
aacaagcaatgtgcacaggtgcaagagtaaattcgtgccaagtaactgcc
catcccggggcgtagcaatgaggtgatgggcgagcaacaaatcaggtgct
gacacgccgcgtggaggggtatataagcagcgacattttccgggtttggg
gtcttccttctgataaagcagtaaagcgttgctgtagaagaatcaggttg
tccgagtgtgttcttgccggcgatacactagctcgggacagtcaggatgg
atgattgttttaatgtgttcttggattcggttagtgagaattttattgag
gatttttgcatcgatattcataagggaaattggtctgaagttctctatct
ttgttggatctttctgtggtttaggtatcagagtaatttgtggcttcata
gaatgagtttgggtagagtaccttctactt
gaattcatctcccccaacctctctcaagcacacacaaagtacttatgtgt
gtgtatacacacacacacacacacacacacacacacattcatataagtat
catggcaatcattgtatagaatagagaattttgctatttcacaagtgcta
ggacattagttcttcaactgcatattttgcattgtgggtgagtggtccaa
catcttatacacagtaatgatgcatgtatctttacgctgggattttcatg
atgaacttctgaaaaattaaaatactgatattaaaaattatgttctttta
aattttcaggagaatggtggactagcttttgtcatggcaaatattcattc
ccatggccttttcgagagaagcataatgggctcagacactatgtatgtat
ctgtatgtctgtctgtctgtctgggcaggtttcatttttatctatctgta
tgtgtggttgggatagagggctagaagggagttccaccttaatattattt
ctatattcatgaaagtattttatagccagtaggtacaagacaacagatat
gatcttaaccattgctaaatagttacattatttataaatatgtatttgct
tgatttattctagtttaaggactttattccttataataatattctttgag
atcaggggtgatctcttctgttagcatggtgccattctcccttcattcat
atttcatgtgaagttttgaactttgaaaagtgcagacctctgactctgtt
ccagtgggtgtcttctaatatattagcatgtttttaggctccctacagct
tttccctttgtccttggcccctgccttatttttgttaacatctgaaaagc
tcctggatggttctttccaagtatgttgccttccatggtgaggcctacct
tactgaacatttattgggcttctttattttacttgtttacttatatccca
tcattgtccctccaatcacttctccacagtatttccccatctcctccctt
cttctctgaggaggtgggggtccatgagtactctgctctgcactgagtca
gacaagcagccagctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60776447_60776676
seq2: B6Ng01-003L06.b_182_722 (reverse)

seq1  AAGTAGAAGGTACTCTACCC-AACTCATTTTATGAAGCCAC-TATTACTC  48
      |||||||||||||||||||| |||||||| |||||||||||  |||||||
seq2  AAGTAGAAGGTACTCTACCCAAACTCATTCTATGAAGCCACAAATTACTC  50

seq1  TGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCA  100

seq1  ATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAA  148
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAA  150

seq1  CCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGA-----CCAAG-  192
      |||||||||||||||||||||| ||||||||||||||||     || || 
seq2  CCGAATCCAAGAACACATTAAAACAATCATCCATCCTGACTGTCCCGAGC  200

seq1  TAGGTTTTATTCCAGGGATG------CAGGGA-----TGGTT-TAATATA  230
      |||  | |||  | || | |      |  |||     || || |  || |
seq2  TAG--TGTATCGCCGGCAAGAACACACTCGGACAACCTGATTCTTCTACA  248

seq1  --------------------------------------------------  230
                                                        
seq2  GCAACGCTTTACTGCTTTATCAGAAGGAAGACCCCAAACCCGGAAAATGT  298

seq1  --------------------------------------------------  230
                                                        
seq2  CGCTGCTTATATACCCCTCCACGCGGCGTGTCAGCACCTGATTTGTTGCT  348

seq1  --------------------------------------------------  230
                                                        
seq2  CGCCCATCACCTCATTGCTACGCCCCGGGATGGGCAGTTACTTGGCACGA  398

seq1  --------------------------------------------------  230
                                                        
seq2  ATTTACTCTTGCACCTGTGCACATTGCTTGTTCACCAGTAGGCACAGCTG  448

seq1  --------------------------------------------------  230
                                                        
seq2  AGGCCAGCACCGTCTTGTAAAGGCGATTGCTCACGGCTCTCCACACCTGA  498

seq1  -------------------------------------------  230
                                                 
seq2  CCAAGTAGGTTTCATTCCAGGGATGCGGGGATGTTTTAATATA  541

seq1: chr18_85133192_85134280
seq2: B6Ng01-003L06.g_66_1133

seq1  GAATTCATCTCCCCCAACCTCTCTCAAGCACACACAAAGTACTTATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCCCCCAACCTCTCTCAAGCACACACAAAGTACTTATGTGT  50

seq1  GTGTATACACACACACACACACACACACACACACACATTCATATAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACACACACACACACACACACACACACACACATTCATATAAGTAT  100

seq1  CATGGCAATCATTGTATAGAATAGAGAATTTTGCTATTTCACAAGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAATCATTGTATAGAATAGAGAATTTTGCTATTTCACAAGTGCTA  150

seq1  GGACATTAGTTCTTCAACTGCATATTTTGCATTGTGGGTGAGTGGTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTAGTTCTTCAACTGCATATTTTGCATTGTGGGTGAGTGGTCCAA  200

seq1  CATCTTATACACAGTAATGATGCATGTATCTTTACGCTGGGATTTTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATACACAGTAATGATGCATGTATCTTTACGCTGGGATTTTCATG  250

seq1  ATGAACTTCTGAAAAATTAAAATACTGATATTAAAAATTATGTTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTCTGAAAAATTAAAATACTGATATTAAAAATTATGTTCTTTTA  300

seq1  AATTTTCAGGAGAATGGTGGACTAGCTTTTGTCATGGCAAATATTCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGGAGAATGGTGGACTAGCTTTTGTCATGGCAAATATTCATTC  350

seq1  CCATGGCCTTTTCGAGAGAAGCATAATGGGCTCAGACACTATGTATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCTTTTCGAGAGAAGCATAATGGGCTCAGACACTATGTATGTAT  400

seq1  CTGTATGTCTGTCTGTCTGTCTGGGCAGGTTTCATTTTTATCTATCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTCTGTCTGTCTGTCTGGGCAGGTTTCATTTTTATCTATCTGTA  450

seq1  TGTGTGGTTGGGATAGAGGGCTAGAAGGGAGTTCCACCTTAATATTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTGGGATAGAGGGCTAGAAGGGAGTTCCACCTTAATATTATTT  500

seq1  CTATATTCATGAAAGTATTTTATAGCCAGTAGGTACAAGACAACAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCATGAAAGTATTTTATAGCCAGTAGGTACAAGACAACAGATAT  550

seq1  GATCTTAACCATTGCTAAATAGTTACATTATTTATAAATATGTATTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAACCATTGCTAAATAGTTACATTATTTATAAATATGTATTTGCT  600

seq1  TGATTTATTCTAGTTTAAGGACTTTATTCCTTATAATAATATTCTTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTCTAGTTTAAGGACTTTATTCCTTATAATAATATTCTTTGAG  650

seq1  ATCAGGGGTGATCTCTTCTGTTAGCATGGTGCCATTCTCCCTTCATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGGTGATCTCTTCTGTTAGCATGGTGCCATTCTCCCTTCATTCAT  700

seq1  ATTTCATGTGAAGTTTTGAACTTTGAAAAGTGCAGACCTCTGACTCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGTGAAGTTTTGAACTTTGAAAAGTGCAGACCTCTGACTCTGTT  750

seq1  CCAGTGGGTGTCTTCTAATATATTAGCATGTTTTTAGGCTCCCTACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGTGTCTTCTAATATATTAGCATGTTTTTAGGCTCCCTACAGCT  800

seq1  TTTCCCTTTGTCCTTGGCCCCTGCCTTATTTTTGTTAACATCTGAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTGTCCTTGGCCCCTGCCTTATTTTTGTTAACATCTGAAAAGC  850

seq1  TCCTGGATGGTTCTTTCCAAGTATGTTGCCTTCCATGGTGAGGCCTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGGTTCTTTCCAAGTATGTTGCCTTCCATGGTGAGGCCTACCT  900

seq1  TACTGAAACAATTTATTGGGCTTCTTTATTTTTACTTGTTTACCTTATAT  950
      |||||||   |||||||||||||||||| ||||||||||||| |||||||
seq2  TACTGAA--CATTTATTGGGCTTCTTTA-TTTTACTTGTTTA-CTTATAT  946

seq1  CCCAATCATTGTCCCCTCCCAATCACTTCCTCCCACAGTTATTTCCCCCA  1000
      ||| |||||||||||   |||||||||||   |||||| ||||| |||||
seq2  CCC-ATCATTGTCCC--TCCAATCACTTC--TCCACAG-TATTT-CCCCA  989

seq1  TCTCCCTTCCCCTTCTTCTCTGAGGAGGTGGGGGTCCCCATGAGTTCCCC  1050
      |||||    ||||||||||||||||||||||||||  ||||||| | | |
seq2  TCTCC---TCCCTTCTTCTCTGAGGAGGTGGGGGT--CCATGAG-TACTC  1033

seq1  TGCTCTGGCACTGAGGCCAGACAAGGCAGCCCAGCTAGA  1089
      |||||| ||||||| | ||||||| |||| |||||||||
seq2  TGCTCT-GCACTGA-GTCAGACAA-GCAG-CCAGCTAGA  1068