BAC Information

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BAC

Clone NameB6Ng01-004K11
Chromosome18 (Build37)
Map Location 59,962,441 - 60,044,944
singlet/doubletdoublet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004K11.bB6Ng01-004K11.g
ACCDH842004DH842005
length1,1781,084
definitionDH842004|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K11, 5' end.DH842005|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,962,441 - 59,963,464)(60,043,840 - 60,044,944)
sequence
gaattcattgctaacaactgggatcaacgagggctccacccaagattcac
ttaatcttggatgccagggtcaagggcttcgtgcccttgccatagttcct
atttcagtctattgtatagtccaccttctccttaggccattgtaaatatg
tgtgtgtgggtgtaactcagctatagtcttagaagccaggtgtgaggtct
ttactctcttagggcaagggctttcacacccaagtcatggttctaactag
ggagttccgttctagctaaccatcttatgaataatgcaatactctaaaac
cacagcccgatctacttcctaaaccattgtaaattcctgtatatgggagc
aacttggcttttattgatagtgtaattccagaggctattctgaacgtcac
tgtctagctcaaggacgttctaggactgttggaacactggcagaaggctt
tagctatgtcagaattcaatcttaaaaggcacttataataggaaaatact
gaaagagaacacgtggatccatacactagactaacacgggaatagaaaat
taatgtatgggttaaagggaacgccagactccaggaggagagcatccttg
aagctctttgcctcatgagtgactttcaagcctctcggcttaagcttact
cgaccagagcacgtggcagtatagggcatatggtgtgggaaccaatgtct
atcactgcaatccaagctgagctgagctagacttggtgtgttccaatgag
atgttgagtatctttagtccctttggtgtttccttttaagcaatgagaaa
acttaatgtattttgtataatatataagacagcactgaacaaggtggaga
agattttttaaattctctgctcacttcatttgatgtactatttgaatgaa
gagaaaactaaagcaaatactaatgacacatgggcattaatagtaaaggc
tacataatgaggatccatataggcagttgggaaatctgctgaggatcatg
gcagagtaaatttaagtagtaccatatgatgaggcagtcatgttggcccg
aatgcagagatggaaaagtcaactgttccaggaaaagaaatagaaactaa
ccatggacagaaagactttgaaggaaagaaaagaaagaaatcccatatag
aaccttaggagccaaattttcttgaggg
gaattcaggtctattttaagtacaagttctatattcaggacttggtcttg
tattttaccttagcaattttcaaatatgcatggttatatttacattttta
tttgttatattaggtataataaaatctttatttttgtatgcttttacaat
atatatttcagtgtttgtgacaatttaaattataccagtcaggttttgaa
tcccttgtccttccatatctccatacctatttattaacaatcttataata
ttaattaatctactgtgcagggtaaaaatgaattgcgtaccccacgaagg
gcatattatgaatgtcttgttgcagtgaataaaacaaatcacttcataat
aaaatttgacagcctccataaagagctgtttagaaagatttttaaaattc
agttgtatattccattatctaatgtctagtttaccatgcattatgtgaag
gacagagaagagactggacatgagtatgtactttaacatggtaacatgag
aagctgtctactgtcacaggaaagtgggctgagatttactcattaaagtt
tttttttgaagtgagatgaagaaatacatactttgatgcaagcttcttaa
tgaaatattttatttttaaagtaaaatatatattcctaacattaacttac
aaagactacttactaattatattatatataactaagattattatagcata
atgtagagaacaaaggctttgactgccactccacaaactgtcctcattct
ctattccagttacaactgtttcccttaaaatgtaattacgatacatattt
tagtactttaatatgaatgggtatcattggtttatctttaaaatttataa
tttaattttagaaagtgattttgaagtttccattaatctgtgctccatgt
tgtgtagattacattggcatggcctgtgttggtatatcaattacttcttt
gacatttttaggcatatggaagctatagactgatatagtagactcatatc
atcttcatatgactgcacatgtctttcagtctgtgagagcttttgatcaa
cacttaatagagcgtacacttgtgtacaactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_59962441_59963464
seq2: B6Ng01-004K11.b_210_1217

seq1  CTATAGTCTTAGAAGCCAGGTGTGAGGTCTTTACTCTCTTAGGGCAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCTTAGAAGCCAGGTGTGAGGTCTTTACTCTCTTAGGGCAAGGG  50

seq1  CTTTCACACCCAAGTCATGGTTCTAACTAGGGAGTTCCGTTCTAGCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACACCCAAGTCATGGTTCTAACTAGGGAGTTCCGTTCTAGCTAAC  100

seq1  CATCTTATGAATAATGCAATACTCTAAAACCACAGCCCGATCTACTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATGAATAATGCAATACTCTAAAACCACAGCCCGATCTACTTCCT  150

seq1  AAACCATTGTAAATTCCTGTATATGGGAGCAACTTGGCTTTTATTGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGTAAATTCCTGTATATGGGAGCAACTTGGCTTTTATTGATAG  200

seq1  TGTAATTCCAGAGGCTATTCTGAACGTCACTGTCTAGCTCAAGGACGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCCAGAGGCTATTCTGAACGTCACTGTCTAGCTCAAGGACGTTC  250

seq1  TAGGACTGTTGGAACACTGGCAGAAGGCTTTAGCTATGTCAGAATTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGTTGGAACACTGGCAGAAGGCTTTAGCTATGTCAGAATTCAAT  300

seq1  CTTAAAAGGCACTTATAATAGGAAAATACTGAAAGAGAACACGTGGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGGCACTTATAATAGGAAAATACTGAAAGAGAACACGTGGATCC  350

seq1  ATACACTAGACTAACACGGGAATAGAAAATTAATGTATGGGTTAAAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGACTAACACGGGAATAGAAAATTAATGTATGGGTTAAAGGGA  400

seq1  ACGCCAGACTCCAGGAGGAGAGCATCCTTGAAGCTCTTTGCCTCATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGACTCCAGGAGGAGAGCATCCTTGAAGCTCTTTGCCTCATGAGT  450

seq1  GACTTTCAAGCCTCTCGGCTTAAGCTTACTCGACCAGAGCACGTGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCAAGCCTCTCGGCTTAAGCTTACTCGACCAGAGCACGTGGCAGT  500

seq1  ATAGGGCATATGGTGTGGGAACCAATGTCTATCACTGCAATCCAAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCATATGGTGTGGGAACCAATGTCTATCACTGCAATCCAAGCTGA  550

seq1  GCTGAGCTAGACTTGGTGTGTTCCAATGAGATGTTGAGTATCTTTAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTAGACTTGGTGTGTTCCAATGAGATGTTGAGTATCTTTAGTCC  600

seq1  CTTTGGTGTTTCCTTTTAAGCAATGAGAAAACTTAATGTATTTTGTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTTTCCTTTTAAGCAATGAGAAAACTTAATGTATTTTGTATAA  650

seq1  TATATAAGACAGCACTGAACAAGGTGGAGAAGATTTTTTAAATTCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGACAGCACTGAACAAGGTGGAGAAGATTTTTTAAATTCTCTGC  700

seq1  TCACTTCATTTGATGTACTATTTGAATGAAGAGAAAACTAAAGCAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCATTTGATGTACTATTTGAATGAAGAGAAAACTAAAGCAAATAC  750

seq1  TAATGACACATGGGCATTAATAGTAAAGGCTACATAATGAGGAATCCATA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATGACACATGGGCATTAATAGTAAAGGCTACATAATGAGG-ATCCATA  799

seq1  TAGGCAGTTGGGAAATCTGCTGAGGATTCATGGCAGAAGTAAAATATAAG  850
      |||||||||||||||||||||||||| ||||||||| ||| |||| ||||
seq2  TAGGCAGTTGGGAAATCTGCTGAGGA-TCATGGCAG-AGT-AAATTTAAG  846

seq1  TAAGTACCATAATGATGAGGCAGTCATGTGGCCACAGAATGCAGAGATGG  900
      | |||||||| |||||||||||||||||| | | | ||||||||||||||
seq2  T-AGTACCAT-ATGATGAGGCAGTCATGTTGGC-CCGAATGCAGAGATGG  893

seq1  AAAAAGTCAACCTGTCCCCAGGAAGAG-AATAGAAACTAACCAATTGGAC  949
       ||||||||| ||||  ||||||| || |||||||||||||||  |||||
seq2  -AAAAGTCAA-CTGT-TCCAGGAAAAGAAATAGAAACTAACCA--TGGAC  938

seq1  AG-AAGACTTTGGAGGGAAAAGAAAGAAAGAAATACCACATAATAGAAAC  998
      || |||||||| || |||||  |||||||||||| |||    |||||| |
seq2  AGAAAGACTTT-GAAGGAAAGAAAAGAAAGAAATCCCA---TATAGAACC  984

seq1  TTAAGGAGCCAAATTTTTCTTGAGGG  1024
      || |||||||||| ||||||||||||
seq2  TT-AGGAGCCAAA-TTTTCTTGAGGG  1008

seq1: chr18_60043840_60044944
seq2: B6Ng01-004K11.g_66_1149 (reverse)

seq1  AAAAGTATGTACACAAGTGTACGCTTCTATTAAGTGTTGATCCAAAAAGG  50
      |||||| ||||||||||||||||| |||||||||||||||||   ||| |
seq2  AAAAGT-TGTACACAAGTGTACGC-TCTATTAAGTGTTGATC---AAAAG  45

seq1  CTCTCAACAGACTGGAAAGGACATGTGCAGTCATTAATGAAGAATGATAT  100
      ||||| ||||||||  || |||||||||||||||  |||||| |||||||
seq2  CTCTC-ACAGACTG--AAAGACATGTGCAGTCAT--ATGAAG-ATGATAT  89

seq1  GAGTCTTACTATTATTCCAAGGTTCCTATAGCTTCCATATTGCCTAAAAA  150
      ||||| ||||| |||  ||  ||  |||||||||||||| ||||||||||
seq2  GAGTC-TACTA-TAT--CA--GT--CTATAGCTTCCATA-TGCCTAAAAA  130

seq1  TGTTCAAAGAAGTAATTGATATACCAACACAGGCCATGCCAATGTAATCT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TCAAAGAAGTAATTGATATACCAACACAGGCCATGCCAATGTAATCT  179

seq1  ACACAACATGGAGCACAGATTAATGGAAACTTCAAAATCACTTTCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATGGAGCACAGATTAATGGAAACTTCAAAATCACTTTCTAAAA  229

seq1  TTAAATTATAAATTTTAAAGATAAACCAATGATACCCATTCATATTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATAAATTTTAAAGATAAACCAATGATACCCATTCATATTAAAG  279

seq1  TACTAAAATATGTATCGTAATTACATTTTAAGGGAAACAGTTGTAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAATATGTATCGTAATTACATTTTAAGGGAAACAGTTGTAACTGG  329

seq1  AATAGAGAATGAGGACAGTTTGTGGAGTGGCAGTCAAAGCCTTTGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAATGAGGACAGTTTGTGGAGTGGCAGTCAAAGCCTTTGTTCTC  379

seq1  TACATTATGCTATAATAATCTTAGTTATATATAATATAATTAGTAAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATGCTATAATAATCTTAGTTATATATAATATAATTAGTAAGTAG  429

seq1  TCTTTGTAAGTTAATGTTAGGAATATATATTTTACTTTAAAAATAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAGTTAATGTTAGGAATATATATTTTACTTTAAAAATAAAATA  479

seq1  TTTCATTAAGAAGCTTGCATCAAAGTATGTATTTCTTCATCTCACTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAGAAGCTTGCATCAAAGTATGTATTTCTTCATCTCACTTCAA  529

seq1  AAAAAAACTTTAATGAGTAAATCTCAGCCCACTTTCCTGTGACAGTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTTTAATGAGTAAATCTCAGCCCACTTTCCTGTGACAGTAGAC  579

seq1  AGCTTCTCATGTTACCATGTTAAAGTACATACTCATGTCCAGTCTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCATGTTACCATGTTAAAGTACATACTCATGTCCAGTCTCTTCT  629

seq1  CTGTCCTTCACATAATGCATGGTAAACTAGACATTAGATAATGGAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTCACATAATGCATGGTAAACTAGACATTAGATAATGGAATATA  679

seq1  CAACTGAATTTTAAAAATCTTTCTAAACAGCTCTTTATGGAGGCTGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAATTTTAAAAATCTTTCTAAACAGCTCTTTATGGAGGCTGTCAA  729

seq1  ATTTTATTATGAAGTGATTTGTTTTATTCACTGCAACAAGACATTCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATGAAGTGATTTGTTTTATTCACTGCAACAAGACATTCATAA  779

seq1  TATGCCCTTCGTGGGGTACGCAATTCATTTTTACCCTGCACAGTAGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTTCGTGGGGTACGCAATTCATTTTTACCCTGCACAGTAGATTA  829

seq1  ATTAATATTATAAGATTGTTAATAAATAGGTATGGAGATATGGAAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTATAAGATTGTTAATAAATAGGTATGGAGATATGGAAGGACA  879

seq1  AGGGATTCAAAACCTGACTGGTATAATTTAAATTGTCACAAACACTGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCAAAACCTGACTGGTATAATTTAAATTGTCACAAACACTGAAA  929

seq1  TATATATTGTAAAAGCATACAAAAATAAAGATTTTATTATACCTAATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGTAAAAGCATACAAAAATAAAGATTTTATTATACCTAATATA  979

seq1  ACAAATAAAAATGTAAATATAACCATGCATATTTGAAAATTGCTAAGGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAAATGTAAATATAACCATGCATATTTGAAAATTGCTAAGGTA  1029

seq1  AAATACAAGACCAAGTCCTGAATATAGAACTTGTACTTAAAATAGACCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGACCAAGTCCTGAATATAGAACTTGTACTTAAAATAGACCTG  1079

seq1  AATTC  1105
      |||||
seq2  AATTC  1084