BAC Information

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BAC

Clone NameB6Ng01-013G22
Chromosome18 (Build37)
Map Location 19,575,139 - 19,712,341
singlet/doubletdoublet
Overlap geneLOC665629
Upstream geneLOC100040658, LOC665624
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013G22.bB6Ng01-013G22.g
ACCDH848247DH848248
length956929
definitionDH848247|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G22, 5' end.DH848248|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,575,139 - 19,576,081)(19,711,411 - 19,712,341)
sequence
gaattctcttccccaaattgttacagctctataaggcagatggtatcaga
cactcttggatgaaataactcgtgtgttttattccttgaggacagcctta
catacattttggagtatgttggggtctaaaggcatatgctttctcttgtt
ttggtctgagatgttagaaatgcctcacctgcatgtggagtggctacagg
tgctgcccctatgagactgattgtcacagttctcaccatggtatgttgtg
gttaactgtcccaggacaggagcctggtcaggagtagataaaaccccaac
catcctcaggtatgagagtacctagtgttctgaatccactcaaccttaca
aggttttctatctggtcacacaatcaactaccccacaggccaatcaattt
ttggtcctttcttcaaattctgcttcatcttttgccaatacacatatata
aaattttcagtttcatgtggttccatttattaattgttgatcttagtacc
tgaacagttggagttttattcagaagattgtctcgtgtgccagtgatttt
aaggttatccccactgtctcttctcttaagatttagtgtatggttttatg
ctgaggatccactttgatttgagctttgagcagagtgatatatatgaatc
tatttgcattcttctacatgtagacatccatttagaccagctgcatttct
tgacgatgctttctttaccccaatgtatgattttgactcaaaaatcaaag
atccatatgtagttagctttcacttctggttcatcaactcaattccattg
atcaaactgtctgtttttattctcgtaccatgcagattttattatgactt
tttctgtagtacagcttgaaattatggatatgtaaactttcagaagttgt
tctatggtatagtattattgtactatcctggattgccacatccactccag
tagtga
gaattctttctagagacaagagatttatctatcattaagcttgattagga
aaggaaagttttacttatagatacaggaaagattggggtgataatttcat
ggtcaagattttgttataaactccagtgatgtgtgtttcatgtttggcct
gggttacccactgccccatagtaggactgccaatatactatcaggggtat
gtgaatagagctatacaggactaaggacccatgaaaatggcccagaatga
tattgtcaagatcacgattcaataaagactgaggctgcaacatcttcatt
gtgattcaaacctggatgagtttgcatgtctaattgttatgctgaccatt
tcctagtaaaaatataagctaagatggcagcagtatagaaaagttgactt
ctatgccggacattctgactttgagtttagccaggcacaaataagacttg
ttggcacatacctaaaatatcagctcttaggaagtgaatgcagaaagacc
agaagttcaagtgtatcctgggttattagcaagtccaggaaactttggtt
acactagaaaaactttaaaataaaagcaaaaaggaagaaaaaaaaagaag
aatgaataaaaatctcttaatggagagaaaggggaagataaaatgaagaa
aggaagtgaggaagataggagagaaaggagggaagaaagaaaaggaaagg
aggaagaggagggacagaaagaaaggatgaacaaaaagttcttgtgtgtg
ctttttagtcatggtatcaaaaatccccatgaacatttccaaaatttcaa
tgccagtactccttccattttgattagttattattctctggatatgtatg
ctaatggttattggtttactaagtatgatcccagtatctgccttagattt
ctcatgagtgatgagttatgtgactctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19575139_19576081
seq2: B6Ng01-013G22.b_46_988

seq1  GAATTCTCTTCCCCAAATTGTTACAGCTCTATAAGGCAGATGGTATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCCCAAATTGTTACAGCTCTATAAGGCAGATGGTATCAGA  50

seq1  CACTCTTGGATGAAATAACTCGTGTGTTTTATTCCTTGAGGACAGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGATGAAATAACTCGTGTGTTTTATTCCTTGAGGACAGCCTTA  100

seq1  CATACATTTTGGAGTATGTTGGGGTCTAAAGGCATATGCTTTCTCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTTGGAGTATGTTGGGGTCTAAAGGCATATGCTTTCTCTTGTT  150

seq1  TTGGTCTGAGATGTTAGAAATGCCTCACCTGCATGTGGAGTGGCTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGAGATGTTAGAAATGCCTCACCTGCATGTGGAGTGGCTACAGG  200

seq1  TGCTGCCCCTATGAGACTGATTGTCACAGTTCTCACCATGGTATGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCCTATGAGACTGATTGTCACAGTTCTCACCATGGTATGTTGTG  250

seq1  GTTAACTGTCCCAGGACAGGAGCCTGGTCAGGAGTAGATAAAACCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTGTCCCAGGACAGGAGCCTGGTCAGGAGTAGATAAAACCCCAAC  300

seq1  CATCCTCAGGTATGAGAGTACCTAGTGTTCTGAATCCACTCAACCTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGGTATGAGAGTACCTAGTGTTCTGAATCCACTCAACCTTACA  350

seq1  AGGTTTTCTATCTGGTCACACAATCAACTACCCCACAGGCCAATCAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCTATCTGGTCACACAATCAACTACCCCACAGGCCAATCAATTT  400

seq1  TTGGTCCTTTCTTCAAATTCTGCTTCATCTTTTGCCAATACACATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTTTCTTCAAATTCTGCTTCATCTTTTGCCAATACACATATATA  450

seq1  AAATTTTCAGTTTCATGTGGTTCCATTTATTAATTGTTGATCTTAGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCAGTTTCATGTGGTTCCATTTATTAATTGTTGATCTTAGTACC  500

seq1  TGAACAGTTGGAGTTTTATTCAGAAGATTGTCTCGTGTGCCAGTGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTTGGAGTTTTATTCAGAAGATTGTCTCGTGTGCCAGTGATTTT  550

seq1  AAGGTTATCCCCACTGTCTCTTCTCTTAAGATTTAGTGTATGGTTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATCCCCACTGTCTCTTCTCTTAAGATTTAGTGTATGGTTTTATG  600

seq1  CTGAGGATCCACTTTGATTTGAGCTTTGAGCAGAGTGATATATATGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATCCACTTTGATTTGAGCTTTGAGCAGAGTGATATATATGAATC  650

seq1  TATTTGCATTCTTCTACATGTAGACATCCATTTAGACCAGCTGCATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATTCTTCTACATGTAGACATCCATTTAGACCAGCTGCATTTCT  700

seq1  TGACGATGCTTTCTTTACCCCAATGTATGATTTTGACTCAAAAATCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGATGCTTTCTTTACCCCAATGTATGATTTTGACTCAAAAATCAAAG  750

seq1  ATCCATATGTAGTTAGCTTTCACTTCTGGTTCATCAACTCAATTCCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATGTAGTTAGCTTTCACTTCTGGTTCATCAACTCAATTCCATTG  800

seq1  ATCAAACTGTCTGTTTTTATTCTCGTACCATGCAGATTTTATTATGAC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCAAACTGTCTGTTTTTATTCTCGTACCATGCAGATTTTATTATGACTT  850

seq1  TCTCTGTAGTACAGCTTGAAATTATGGATATGTAAACTTTCAGAAGTTGT  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGTACAGCTTGAAATTATGGATATGTAAACTTTCAGAAGTTGT  900

seq1  TCTATGGTATAGTATTATTGTAACTATCCTGGATTGCCACATCC  943
      ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTATGGTATAGTATTATTGT-ACTATCCTGGATTGCCACATCC  943

seq1: chr18_19711411_19712341
seq2: B6Ng01-013G22.g_70_998 (reverse)

seq1  ACAGAGTCA-ATAACTCATCACTCAATGAGAAATCTAAGGCAGATACT-G  48
      ||||||||| |||||||||||||| ||||||||||||||||||||||| |
seq2  ACAGAGTCACATAACTCATCACTC-ATGAGAAATCTAAGGCAGATACTGG  49

seq1  GATCATACCTAAGTAAACCAATAA-CATTAGCATACATATCCAGAGAATA  97
      ||||||| || ||||||||||||| |||||||||||||||||||||||||
seq2  GATCATA-CTTAGTAAACCAATAACCATTAGCATACATATCCAGAGAATA  98

seq1  ATAACTAATCAAAATGGAAGGAGTACTGGCATTGACATTTTGGCAATGTT  147
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  ATAACTAATCAAAATGGAAGGAGTACTGGCATTGAAATTTTGGAAATGTT  148

seq1  CATGGGGAATTTTTGATACAATGACTAAAAAGCACACACAAGAACTTTTT  197
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGGGG-ATTTTTGATACCATGACTAAAAAGCACACACAAGAACTTTTT  197

seq1  GTTTCATCCTTTCTTTTCTGTCCCTCCTCTTCCTCCTTTCCTTTTCTTTC  247
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  G-TTCATCCTTTC-TTTCTGTCCCTCCTCTTCCTCCTTTCCTTTTCTTTC  245

seq1  TTCCCTCCTTTCTCTCCTATCTTCCTCACTTCCTTTCTTCATTTTATCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTTTCTCTCCTATCTTCCTCACTTCCTTTCTTCATTTTATCTT  295

seq1  CCCCTTTCTCTCCATTAAGAGATTTTTATTCATTCTTCTTTTTTTTTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTCTCCATTAAGAGATTTTTATTCATTCTTCTTTTTTTTTCTT  345

seq1  CCTTTTTGCTTTTATTTTAAAGTTTTTCTAGTGTAACCAAAGTTTCCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGCTTTTATTTTAAAGTTTTTCTAGTGTAACCAAAGTTTCCTGG  395

seq1  ACTTGCTAATAACCCAGGATACACTTGAACTTCTGGTCTTTCTGCATTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAATAACCCAGGATACACTTGAACTTCTGGTCTTTCTGCATTCA  445

seq1  CTTCCTAAGAGCTGATATTTTAGGTATGTGCCAACAAGTCTTATTTGTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAGAGCTGATATTTTAGGTATGTGCCAACAAGTCTTATTTGTGC  495

seq1  CTGGCTAAACTCAAAGTCAGAATGTCCGGCATAGAAGTCAACTTTTCTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAACTCAAAGTCAGAATGTCCGGCATAGAAGTCAACTTTTCTAT  545

seq1  ACTGCTGCCATCTTAGCTTATATTTTTACTAGGAAATGGTCAGCATAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCCATCTTAGCTTATATTTTTACTAGGAAATGGTCAGCATAACA  595

seq1  ATTAGACATGCAAACTCATCCAGGTTTGAATCACAATGAAGATGTTGCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACATGCAAACTCATCCAGGTTTGAATCACAATGAAGATGTTGCAG  645

seq1  CCTCAGTCTTTATTGAATCGTGATCTTGACAATATCATTCTGGGCCATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTCTTTATTGAATCGTGATCTTGACAATATCATTCTGGGCCATTT  695

seq1  TCATGGGTCCTTAGTCCTGTATAGCTCTATTCACATACCCCTGATAGTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTCCTTAGTCCTGTATAGCTCTATTCACATACCCCTGATAGTAT  745

seq1  ATTGGCAGTCCTACTATGGGGCAGTGGGTAACCCAGGCCAAACATGAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGTCCTACTATGGGGCAGTGGGTAACCCAGGCCAAACATGAAAC  795

seq1  ACACATCACTGGAGTTTATAACAAAATCTTGACCATGAAATTATCACCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCACTGGAGTTTATAACAAAATCTTGACCATGAAATTATCACCCC  845

seq1  AATCTTTCCTGTATCTATAAGTAAAACTTTCCTTTCCTAATCAAGCTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCCTGTATCTATAAGTAAAACTTTCCTTTCCTAATCAAGCTTAA  895

seq1  TGATAGATAAATCTCTTGTCTCTAGAAAGAATTC  931
      ||||||||||||||||||||||||||||||||||
seq2  TGATAGATAAATCTCTTGTCTCTAGAAAGAATTC  929