BAC Information

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BAC

Clone NameB6Ng01-017F16
Chromosome18 (Build37)
Map Location 79,627,296 - 79,756,330
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc14a2, Setbp1, LOC100039242
Downstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F16.bB6Ng01-017F16.g
ACCDH851063DH851064
length9971,098
definitionDH851063|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F16, 5' end.DH851064|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,627,296 - 79,628,276)(79,755,207 - 79,756,330)
sequence
gaattctttgtttagctctaccccatttttaacaggatatttggttctct
ggagtctaacttcttaagttctttgtatatattagatattagccctcatt
cagatgtagggttggtaatgatcttttcccaatctgttggttgcagtttt
gtcctaatgatagtgtcctttgcctcacagaagcttggaaagtttatgag
gtcccatttgtcaattcttgatcttagaccataagatcattgatgttctg
ttcaggaaaatttcccctgtacccatgtgctccaggctcttcctcacttt
cttttctattagtttcagtgtctctggttttatgtggaaatccttggtcc
acttggacttgagcttcatacaaggagataagaatggcgcaatttgcatt
cttctacatgctaactccctgttgacccagcaccatttgttgaaaatgct
gtctcttttccactggatggttttagctcctttgtcaaagaccaagtgac
cataggtgcgtggtcctaaaggagacagttaagcacagttctcgccactt
gttcctgtcatgcctcagccagacagtggaatggtttgtgtgttcttgcc
atgaggagctaccaccaactcacaatgggctgacacttctacaattatga
tcccagataagcaaaatggagtgtattcattcaggtttgtttccagcctg
taggcgagaaaccagacaagaacctgctttgaattccgtctgtctattca
ctgtcctctttccttctctagaacattgagatgtcccagtgaggaggttg
ggatttgtatctaaccaacccctttcatttttgtcttcacaaaatggccc
agatggttttgcctcacctgccttgtggtccttcttgctttggtgcacaa
ggcttctggacctgatgtaagacagagacaataattcctacactttcaag
aaatttggtggtctgaaacttccaggcagagcttctttggaatcata
gaattccagtctcctcctggctgccttctgatcaaggtgtagatttctca
gtgactccagcatcatgtctgcctacatgacgccatgattcctgccttaa
taatggactgaacttctgaaaccgtaagccagatacaattaaatgtttgc
ctttataagagttgctttggtcatggtgtctcttcacagtgatgagacac
tgactaagacagcatacacgtggagagactaaagcgttggctttaagttt
tgtgaagcttctacatattttgggttgacctgttattgatttgagcatat
ttcattggaaaggcatgtatagaattgagattcatagtcatagtgccagg
tgtctagagatattacttaatcattctatttaaaccaagaagacatttcc
tatgcaatgttattttcatatttcaaatgaaaatattaaagcatggagat
atcataccacctgtgacatattcttttaaattttgtacatacaaggagat
tggagacttaagatttcaacctactgattattagtgagtgagattccagg
taatttcttgtgtattttgctttatttaattggtaatatcaatatagcat
ttctatagtaaaaatcagcacaacaaccctagcctcatttaaataaagac
atgcatacactcttacaatgtgccacatggtttgagaatggatctccata
cacacaagcaaactacgtgcttatttatatgttttttccttttcttcagg
acaacatcatcctcccaagagaacaaagtgataaaatttattttacattt
caaaaatattaatttattaatattattaagatataaataatgtgtccgaa
aggctcattaatgttttacttaaaattttcatgcattatatttttgccaa
cacttaacttgtaagtccttctagatccaggtcaactaccccacccacaa
cttgattgttcttctcttctccaacagagcaccaatctaaaaacaaataa
caacaagaaaacacacacacaaatattaaaatcgagttaacctcccccca
acttaaaggtagcttcatagatccaatctgtgttgcccaactattcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79627296_79628276
seq2: B6Ng01-017F16.b_62_1043

seq1  CTCTACCCCATTTTTAACAGGATATTTGGTTCTCTGGAGTCTAACTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCCATTTTTAACAGGATATTTGGTTCTCTGGAGTCTAACTTCTT  50

seq1  AAGTTCTTTGTATATATTAGATATTAGCCCTCATTCAGATGTAGGGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTTGTATATATTAGATATTAGCCCTCATTCAGATGTAGGGTTGG  100

seq1  TAATGATCTTTTCCCAATCTGTTGGTTGCAGTTTTGTCCTAATGATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCTTTTCCCAATCTGTTGGTTGCAGTTTTGTCCTAATGATAGTG  150

seq1  TCCTTTGCCTCACAGAAGCTTGGAAAGTTTATGAGGTCCCATTTGTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCTCACAGAAGCTTGGAAAGTTTATGAGGTCCCATTTGTCAAT  200

seq1  TCTTGATCTTAGACCATAAGATCATTGATGTTCTGTTCAGGAAAATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTTAGACCATAAGATCATTGATGTTCTGTTCAGGAAAATTTCC  250

seq1  CCTGTACCCATGTGCTCCAGGCTCTTCCTCACTTTCTTTTCTATTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCCATGTGCTCCAGGCTCTTCCTCACTTTCTTTTCTATTAGTTT  300

seq1  CAGTGTCTCTGGTTTTATGTGGAAATCCTTGGTCCACTTGGACTTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTGGTTTTATGTGGAAATCCTTGGTCCACTTGGACTTGAGCT  350

seq1  TCATACAAGGAGATAAGAATGGCGCAATTTGCATTCTTCTACATGCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAAGGAGATAAGAATGGCGCAATTTGCATTCTTCTACATGCTAAC  400

seq1  TCCCTGTTGACCCAGCACCATTTGTTGAAAATGCTGTCTCTTTTCCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTGACCCAGCACCATTTGTTGAAAATGCTGTCTCTTTTCCACTG  450

seq1  GATGGTTTTAGCTCCTTTGTCAAAGACCAAGTGACCATAGGTGCGTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTAGCTCCTTTGTCAAAGACCAAGTGACCATAGGTGCGTGGTC  500

seq1  CTAAAGGAGACAGTTAAGCACAGTTCTCGCCACTTGTTCCTGTCATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGACAGTTAAGCACAGTTCTCGCCACTTGTTCCTGTCATGCCT  550

seq1  CAGCCAGACAGTGGAATGGTTTGTGTGTTCTTGCCATGAGGAGCTACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGACAGTGGAATGGTTTGTGTGTTCTTGCCATGAGGAGCTACCAC  600

seq1  CAACTCACAATGGGCTGACACTTCTACAATTATGATCCCAGATAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCACAATGGGCTGACACTTCTACAATTATGATCCCAGATAAGCAAA  650

seq1  ATGGAGTGTATTCATTCAGGTTTGTTTCCAGCCTGTAGGCGAGAAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGTATTCATTCAGGTTTGTTTCCAGCCTGTAGGCGAGAAACCAG  700

seq1  ACAAGAACCTGCTTTGAATTCCGTCTGTCTATTCACTGTCCTCTTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACCTGCTTTGAATTCCGTCTGTCTATTCACTGTCCTCTTTCCTT  750

seq1  CTCTAGAACATTGAGATGTCCCAGTGAGGAGGTTGGGATTTGTATCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAACATTGAGATGTCCCAGTGAGGAGGTTGGGATTTGTATCTAAC  800

seq1  CAACCCC-TTCATTTTTGTCTTCACAAAATGGCCCAGATGGTTTTGCCTC  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTTTCATTTTTGTCTTCACAAAATGGCCCAGATGGTTTTGCCTC  850

seq1  ACCTGCC-TGTGGTCCTTCTTGCTTTGGTGCACAAGGCTTCTGGACCTGA  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTTGTGGTCCTTCTTGCTTTGGTGCACAAGGCTTCTGGACCTGA  900

seq1  TGTAAGACAGAGACAATATTCCCTACACTTTTCAAGAAATTTGGTGGTCT  948
      |||||||||||||||||| | ||||||| |||||||||||||||||||||
seq2  TGTAAGACAGAGACAATAATTCCTACAC-TTTCAAGAAATTTGGTGGTCT  949

seq1  GAGACTTCCAGGCAGAGCTTCTTTGGAATCATA  981
      || ||||||||||||||||||||||||||||||
seq2  GAAACTTCCAGGCAGAGCTTCTTTGGAATCATA  982

seq1: chr18_79755207_79756330
seq2: B6Ng01-017F16.g_67_1164 (reverse)

seq1  TGGAATAGTTGGGCAACACAGATATGGATTCTATGAAGCTTACTGTTTTA  50
      ||||||||||||||||||||||| |||| |||||||||||  |   ||||
seq2  TGGAATAGTTGGGCAACACAGAT-TGGA-TCTATGAAGCTACC---TTTA  45

seq1  GTTTGGGGGGAGGTTTACACTTCCGATTTTTAATATTTTGTTGTTGTTGT  100
        ||||||||||||| ||     ||| |||||||||||      |||   
seq2  AGTTGGGGGGAGGTTAAC----TCGA-TTTTAATATTT-----GTGTGTG  85

seq1  TGTTTTCTTTGTTTGTTTATTTGTTTTTAGATTTGGTGCTTTTGTTTGTG  150
      ||||||| |||||   ||||||||||||||| ||||||| | |||| | |
seq2  TGTTTTC-TTGTT--GTTATTTGTTTTTAGA-TTGGTGC-TCTGTTGGAG  130

seq1  AGAGAGAAAGAAC-ATCAAGTTTGGTGGGTGGGGTAGTTGACCTGGATCT  199
      | |||| |||||| ||||||||  ||||||||||||||||||||||||||
seq2  A-AGAG-AAGAACAATCAAGTT--GTGGGTGGGGTAGTTGACCTGGATCT  176

seq1  AGAAGGACTTAACAAGTTAAGTGTTGGCAAAAATATAATGCATGAAAAAT  249
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGAAGGACTT-ACAAGTTAAGTGTTGGCAAAAATATAATGCATG-AAAAT  224

seq1  TTTAAGTAAAAACATTAATGAGCCTTTCGGACACATTATTTAATATCTTA  299
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTAAGT-AAAACATTAATGAGCCTTTCGGACACATTATTT-ATATCTTA  272

seq1  ATAATATTAATAAATTAATATTTTTGAAATGTAAAATAAATTTTATCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAATATTAATAAATTAATATTTTTGAAATGTAAAATAAATTTTATC-AC  321

seq1  TTTGTTCTCTTGGGAGGATGATGTTGTCCTGAAGAAA--GGAAAAACATA  397
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  TTTGTTCTCTTGGGAGGATGATGTTGTCCTGAAGAAAAGGAAAAAACATA  371

seq1  TAAATAAGCACGTAGTTTGCTTGTGTGTATGGAGATCCATTCTCAAACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGCACGTAGTTTGCTTGTGTGTATGGAGATCCATTCTCAAACCA  421

seq1  TGTGGCACATTGTAAGAGTGTATGCATGTCTTTATTTAAATGAGGCTAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACATTGTAAGAGTGTATGCATGTCTTTATTTAAATGAGGCTAGG  471

seq1  GTTGTTGTGCTGATTTTTACTATAGAAATGCTATATTGATATTACCAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTGCTGATTTTTACTATAGAAATGCTATATTGATATTACCAATT  521

seq1  AAATAAAGCAAAATACACAAGAAATTACCTGGAATCTCACTCACTAATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCAAAATACACAAGAAATTACCTGGAATCTCACTCACTAATAA  571

seq1  TCAGTAGGTTGAAATCTTAAGTCTCCAATCTCCTTGTATGTACAAAATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGTTGAAATCTTAAGTCTCCAATCTCCTTGTATGTACAAAATTT  621

seq1  AAAAGAATATGTCACAGGTGGTATGATATCTCCATGCTTTAATATTTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATGTCACAGGTGGTATGATATCTCCATGCTTTAATATTTTCA  671

seq1  TTTGAAATATGAAAATAACATTGCATAGGAAATGTCTTCTTGGTTTAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATGAAAATAACATTGCATAGGAAATGTCTTCTTGGTTTAAAT  721

seq1  AGAATGATTAAGTAATATCTCTAGACACCTGGCACTATGACTATGAATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATTAAGTAATATCTCTAGACACCTGGCACTATGACTATGAATCT  771

seq1  CAATTCTATACATGCCTTTCCAATGAAATATGCTCAAATCAATAACAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTATACATGCCTTTCCAATGAAATATGCTCAAATCAATAACAGGT  821

seq1  CAACCCAAAATATGTAGAAGCTTCACAAAACTTAAAGCCAACGCTTTAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAAATATGTAGAAGCTTCACAAAACTTAAAGCCAACGCTTTAGT  871

seq1  CTCTCCACGTGTATGCTGTCTTAGTCAGTGTCTCATCACTGTGAAGAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACGTGTATGCTGTCTTAGTCAGTGTCTCATCACTGTGAAGAGAC  921

seq1  ACCATGACCAAAGCAACTCTTATAAAGGCAAACATTTAATTGTATCTGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCAAAGCAACTCTTATAAAGGCAAACATTTAATTGTATCTGGC  971

seq1  TTACGGTTTCAGAAGTTCAGTCCATTATTAAGGCAGGAATCATGGCGTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGTTTCAGAAGTTCAGTCCATTATTAAGGCAGGAATCATGGCGTCA  1021

seq1  TGTAGGCAGACATGATGCTGGAGTCACTGAGAAATCTACACCTTGATCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCAGACATGATGCTGGAGTCACTGAGAAATCTACACCTTGATCAG  1071

seq1  AAGGCAGCCAGGAGGAGACTGGAATTC  1124
      |||||||||||||||||||||||||||
seq2  AAGGCAGCCAGGAGGAGACTGGAATTC  1098