BAC Information

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BAC

Clone NameB6Ng01-019I11
Chromosome18 (Build37)
Map Location 12,055,247 - 12,178,523
singlet/doubletdoublet
Overlap geneCables1, 6030446N20Rik
Upstream geneGata6, LOC665310, LOC100040148, Rbbp8, LOC621998
Downstream geneRiok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I11.bB6Ng01-019I11.g
ACCDH852588DH852589
length9681,039
definitionDH852588|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I11, 5' end.DH852589|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,055,247 - 12,056,220)(12,177,471 - 12,178,523)
sequence
gaattcactttgatgcaaagttaaaaaatgactcaagattgtaaaaagcc
atccacaaacatggtgacagacctttgtggagaaagagaggtggccagct
gccctgtgctatgcgacctgaacaccctggggtgggttggttgccaagag
gagcctccaatcatcactaattccagtcttcaccaagagtgtgctgtgca
caaggggagaaagctgaacattagtctgtcatcaggcatagatacattgg
ggataatgtgctcacagagcctctgaggagcaaggctacctgggacctcc
ctgagagctcattgctgggcaggtggacctgagccatcaatgacaggctc
cccatgctgagcatgaaaactgacggcagacagtagctggcatgacgctt
ctcacgggcagctctgttaggaaagctaagctcttccctcttggtacttt
ggagcactgagctggctggctgtgaacgcctacctggtacctgggagagc
tgctgcctgaagatgtcacctcccagactcatttcctggtgaacccgtga
ggagctgctgcctcctgtgggaggagctgccaaagccatgtaaaggcctc
tggatgggaggggtaaggaatgaggctgttgtcttctctatagagtgtga
actccaagaagaaaaaaaaaaagacacaggatttcagctccttttgtcag
cttctttttttattttctttgatttaaattttattgcattatgatgagaa
aagacacataaattctaattatctggatttgttacatttaaaaacatatt
ttgagtaaaatagacttacatcacattcttctttccctttttgtacccaa
cccctcccgaagagccttttcctcttcaaacctgtaagctgacaggaaac
cggagctgaaatgacgcttgactttcttttttttttttttattttttttg
tgtttttcagatagggtt
gaattcacaggcactggctgtgatgttaaagaccggcagtttccaagtgc
ctgatcggacacagggaatactggtaccaaacagtgttgtgtagcctaac
tgtcacacttctggctgtattcccaagagaaaggaaaaccaccagagctc
acagggacaaggccatggaacagaagtgacagcacacagacaaggccatg
gaacagaagtggcggcaaagtggtagtgacaagactgagaggacgctgga
ctcctgaactgtgcccttaacagctgaacttcatgacttacacattttaa
aaaagctgttttgaaaatagcgttaagttatcgtgtaaagtattagattt
cactatgacattttcagagctaatttttgctgacttctgccttaccatgt
agcctgcctccccttcttccatcacatttcctgctaccctgcttcttacc
acctgactgccctgcctggctttgaagctgccttttcactaaggcgtctg
ggtgtcacttgcagaaaggaagatgttggagccttgctgttccggctgtc
cgctgctgtctcctggatgccatgactgtttctaacaaatagctaaattc
tccagtgaagagataagcccagactccccacagcttggcagaagtattgt
attgttttgttcagctgcacaggtgaggacctggggctgtcaggcacact
cttgtatgaggggctgaggagggtttaaaaaaacaaaacaaacaaacaaa
caaacaaaaaaccagcctgcctgccattccctcagtaaatgttttaaata
aataaacacaaagttccagagctgtgcttctcactgggtgtacctgctag
tctgggctgggtacctcccagggggatggcctcagcctgctgtgtggatg
gctccctcctgctctcaggctcccttttctttggagttaggattggacac
tttttaagcaaacttttcagttgaagctctttgggtccaagcttgccagg
tctagcacactttgctggggtgtgggtagtgatgtagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_12055247_12056220
seq2: B6Ng01-019I11.b_42_1009

seq1  GAATTCACTTTGATGCAAAGTTAAAAAATGACTCAAGATTGTAAAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGATGCAAAGTTAAAAAATGACTCAAGATTGTAAAAAGCC  50

seq1  ATCCACAAACATGGTGACAGACCTTTGTGGAGAAAGAGAGGTGGCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAACATGGTGACAGACCTTTGTGGAGAAAGAGAGGTGGCCAGCT  100

seq1  GCCCTGTGCTATGCGACCTGAACACCCTGGGGTGGGTTGGTTGCCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGCTATGCGACCTGAACACCCTGGGGTGGGTTGGTTGCCAAGAG  150

seq1  GAGCCTCCAATCATCACTAATTCCAGTCTTCACCAAGAGTGTGCTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCAATCATCACTAATTCCAGTCTTCACCAAGAGTGTGCTGTGCA  200

seq1  CAAGGGGAGAAAGCTGAACATTAGTCTGTCATCAGGCATAGATACATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAGAAAGCTGAACATTAGTCTGTCATCAGGCATAGATACATTGG  250

seq1  GGATAATGTGCTCACAGAGCCTCTGAGGAGCAAGGCTACCTGGGACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGTGCTCACAGAGCCTCTGAGGAGCAAGGCTACCTGGGACCTCC  300

seq1  CTGAGAGCTCATTGCTGGGCAGGTGGACCTGAGCCATCAATGACAGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCTCATTGCTGGGCAGGTGGACCTGAGCCATCAATGACAGGCTC  350

seq1  CCCATGCTGAGCATGAAAACTGACGGCAGACAGTAGCTGGCATGACGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTGAGCATGAAAACTGACGGCAGACAGTAGCTGGCATGACGCTT  400

seq1  CTCACGGGCAGCTCTGTTAGGAAAGCTAAGCTCTTCCCTCTTGGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGGCAGCTCTGTTAGGAAAGCTAAGCTCTTCCCTCTTGGTACTTT  450

seq1  GGAGCACTGAGCTGGCTGGCTGTGAACGCCTACCTGGTACCTGGGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACTGAGCTGGCTGGCTGTGAACGCCTACCTGGTACCTGGGAGAGC  500

seq1  TGCTGCCTGAAGATGTCACCTCCCAGACTCATTTCCTGGTGAACCCGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGAAGATGTCACCTCCCAGACTCATTTCCTGGTGAACCCGTGA  550

seq1  GGAGCTGCTGCCTCCTGTGGGAGGAGCTGCCAAAGCCATGTAAAGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCTGCCTCCTGTGGGAGGAGCTGCCAAAGCCATGTAAAGGCCTC  600

seq1  TGGATGGGAGGGGTAAGGAATGAGGCTGTTGTCTTCTCTATAGAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGAGGGGTAAGGAATGAGGCTGTTGTCTTCTCTATAGAGTGTGA  650

seq1  ACTCCAAGAAGAAAAAAAAAAAGACACAGGATTTCAGCTCCTTTTGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGAAGAAAAAAAAAAAGACACAGGATTTCAGCTCCTTTTGTCAG  700

seq1  CTTC-TTTTTTATTTTCTTTGATTTAAATTTTATTGCATTATGATGAGAA  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTATTTTCTTTGATTTAAATTTTATTGCATTATGATGAGAA  750

seq1  AAGACACATAATTTCTAATTTATCTGGATTTGTTAACATTTAAAAACATA  799
      ||||||||||| |||||| ||||||||||||||| |||||||||||||||
seq2  AAGACACATAAATTCTAA-TTATCTGGATTTGTT-ACATTTAAAAACATA  798

seq1  TTTTGAGT-AAATAGACTTACATCACATTCTTCTTTCCC-TTTTGTACCC  847
      |||||||| |||||||||||||||||||||||||||||| ||||||| ||
seq2  TTTTGAGTAAAATAGACTTACATCACATTCTTCTTTCCCTTTTTGTA-CC  847

seq1  CAACCCCTCCCGAAGAGCCCTTTTCCTCTTCAAAACCTGTAAGCTGACAG  897
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CAACCCCTCCCGAAGAG-CCTTTTCCTCTTC-AAACCTGTAAGCTGACAG  895

seq1  GAAAACCGGAGCTGAAATGACGCTATGACTTCTTTTTTTTTTTTTTTTTT  947
      | |||||||||||||||||||||| |||||| | |||||||||||||| |
seq2  G-AAACCGGAGCTGAAATGACGCT-TGACTT-TCTTTTTTTTTTTTTTAT  942

seq1  TTTTTTTTGGTTTTTCGAGATAGGGTT  974
      |||||||  ||||||| ||||||||||
seq2  TTTTTTTGTGTTTTTC-AGATAGGGTT  968

seq1: chr18_12177471_12178523
seq2: B6Ng01-019I11.g_69_1107 (reverse)

seq1  CTCTACATCACTACCCACAACACACAGCAATGTGTGCCTAGAGCCTGGCA  50
      |||||||||||||||||||   | |||||| ||||| ||||| |||||||
seq2  CTCTACATCACTACCCACA--CCCCAGCAAAGTGTG-CTAGA-CCTGGCA  46

seq1  AGCTGGGACCCAGAGAGCTTTCAACTTGAAAAGTTTGCTTTAAAAAGTGT  100
      |||| ||||||| ||||| |||||| |||||||||||| |||||||||||
seq2  AGCTTGGACCCAAAGAGC-TTCAAC-TGAAAAGTTTGC-TTAAAAAGTGT  93

seq1  CCAATCCTAACTCCAAAGAAAAGGGAGCCTGAGAGGCAGGAGGGAAGCCA  150
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CCAATCCTAACTCCAAAGAAAAGGGAGCCTGAGA-GCAGGAGGG-AGCCA  141

seq1  TCCAACACAGCAGGCCTGAGGCCATCCCCCTGGGAGGTACCCAGCCCAGA  200
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCC-ACACAGCAGG-CTGAGGCCATCCCCCTGGGAGGTACCCAGCCCAGA  189

seq1  CCTAGCAGGTACACCCAGTGAGAAGCACAGCTCTGGAACTTTGTGTTTAT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTAGCAGGTACACCCAGTGAGAAGCACAGCTCTGGAACTTTGTGTTTAT  238

seq1  TTATTTAAAACATTTACCTGAGGGAATGGCAGGCAGGCTGGTTTTTTTGT  300
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TTATTTAAAACATTTA-CTGAGGGAATGGCAGGCAGGCTGG-TTTTTTGT  286

seq1  TTGTTTGTTTGTTTGTTTTGTTTTTTTAAACCCTCCTCAGCCCCTCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTTGTTTTTTTAAACCCTCCTCAGCCCCTCATAC  336

seq1  AAGAGTGTGCCTGACAGCCCCAGGTCCTCACCTGTGCAGCTGAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGCCTGACAGCCCCAGGTCCTCACCTGTGCAGCTGAACAAAAC  386

seq1  AATACAATACTTCTGCCAAGCTGTGGGGAGTCTGGGCTTATCTCTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATACTTCTGCCAAGCTGTGGGGAGTCTGGGCTTATCTCTTCACT  436

seq1  GGAGAATTTAGCTATTTGTTAGAAACAGTCATGGCATCCAGGAGACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTAGCTATTTGTTAGAAACAGTCATGGCATCCAGGAGACAGCA  486

seq1  GCGGACAGCCGGAACAGCAAGGCTCCAACATCTTCCTTTCTGCAAGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACAGCCGGAACAGCAAGGCTCCAACATCTTCCTTTCTGCAAGTGAC  536

seq1  ACCCAGACGCCTTAGTGAAAAGGCAGCTTCAAAGCCAGGCAGGGCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACGCCTTAGTGAAAAGGCAGCTTCAAAGCCAGGCAGGGCAGTCA  586

seq1  GGTGGTAAGAAGCAGGGTAGCAGGAAATGTGATGGAAGAAGGGGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAAGAAGCAGGGTAGCAGGAAATGTGATGGAAGAAGGGGAGGCAG  636

seq1  GCTACATGGTAAGGCAGAAGTCAGCAAAAATTAGCTCTGAAAATGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGGTAAGGCAGAAGTCAGCAAAAATTAGCTCTGAAAATGTCATA  686

seq1  GTGAAATCTAATACTTTACACGATAACTTAACGCTATTTTCAAAACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTAATACTTTACACGATAACTTAACGCTATTTTCAAAACAGCT  736

seq1  TTTTTAAAATGTGTAAGTCATGAAGTTCAGCTGTTAAGGGCACAGTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATGTGTAAGTCATGAAGTTCAGCTGTTAAGGGCACAGTTCAG  786

seq1  GAGTCCAGCGTCCTCTCAGTCTTGTCACTACCACTTTGCCGCCACTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGCGTCCTCTCAGTCTTGTCACTACCACTTTGCCGCCACTTCTG  836

seq1  TTCCATGGCCTTGTCTGTGTGCTGTCACTTCTGTTCCATGGCCTTGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGCCTTGTCTGTGTGCTGTCACTTCTGTTCCATGGCCTTGTCCC  886

seq1  TGTGAGCTCTGGTGGTTTTCCTTTCTCTTGGGAATACAGCCAGAAGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTCTGGTGGTTTTCCTTTCTCTTGGGAATACAGCCAGAAGTGTG  936

seq1  ACAGTTAGGCTACACAACACTGTTTGGTACCAGTATTCCCTGTGTCCGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGGCTACACAACACTGTTTGGTACCAGTATTCCCTGTGTCCGAT  986

seq1  CAGGCACTTGGAAACTGCCGGTCTTTAACATCACAGCCAGTGCCTGTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTTGGAAACTGCCGGTCTTTAACATCACAGCCAGTGCCTGTGAA  1036

seq1  TTC  1053
      |||
seq2  TTC  1039