BAC Information

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BAC

Clone NameB6Ng01-019M15
Chromosome18 (Build37)
Map Location 88,780,762 - 88,908,259
singlet/doubletdoublet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M15.bB6Ng01-019M15.g
ACCDH852776DH852777
length1,004983
definitionDH852776|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M15, 5' end.DH852777|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,907,249 - 88,908,259)(88,780,762 - 88,781,742)
sequence
gaattctgtatctctatatactgttgagggaaactgaaaactgtgatatg
gcaaactcatacatattttggtgaaaatatactgctcacctaaaaaaaga
attagaaatataagcatgtgttgaagcattccttcacactgttgataaaa
taaaaaatgattctatagtatcgtgtggcttaaggatgcttcaatttatt
ttaacttgaaatgtcacttctgaaatagtgtgtttttttttactattgag
gaaaaaaatcataattcgttgaagctacaaacctcttatacacaaataac
ttaccactaagaatctgactcttgtcagctgagatgacttttttcactat
cagagaaataaatcatggaggtcttactgtaactatgtacataccatacc
ttaccattgctgaagaccatatggaaatactttacagagccacattagtc
aaaatgaggatgaggaaaggggtggccatgatttcctaaatttccataaa
tcacttctccagtttttgagtacgacaggccttcaatttagcacctttcc
aacaaagaaaatgacttttgcttcaagttgctttacatcatccgtatcat
gcacaggttcaacttgagtttgtatgtctagctgacacttgccaatcaat
tactactcctcaaaaggatctataagaagtttatggttgtaggggatggg
tattattcagtggtgtaagccactaataaattacccaaactccagagaat
atctcctcacccactctctcataggtgaccctatttaaactcactgattt
ccctagaaacaacacacagccccaaagaagtactcacaaagccataatcc
cagtattacatgccccagtgctgaggttagaaagctaccctaggcccaag
aagtataatacagctttcaatgtcagccaaatgataatcataatcagaac
tggttgtgcaggtcttagggagggacaaagctgctaatatttaatgccac
agcc
gaattctcagggggctctctgaattgttttattctaatcagagtcttcaa
taataaagtgcagccacatgcaatgagtgcacatgggccacaatttcagt
gctcagtgaggagcaggcttttctagtatcttcttgctgataaaaacaac
taacattgggatcccactccctaagaagacaaataacttctaatatgtcc
ttgatccaaaaggggaagcatttaaagccacatttcagtatttgggcaag
ggtgccaatactatgtaatagagaaagaaagttctttaaaaaaccaaaag
aaaaaattgtgtctacattcaaagaatgaaattgaaattatactgaatgc
tatatataagcttatgttttctctaaattctgtgtgtatgtgtgacataa
aaatataagtaaagttgtctagtcaaacaaaacaaacaggagggtaattt
gaaaagggagggtacagggtatggaagggatatgctctggtattttaatt
tttgtggtccattgcattaatatttctcttattttcattctcctaggaca
tcttgaggcacatcattagtcgattaaaatatctcatggatatttttaaa
gtttttatatctgttcattaaaacgtttattgaaggcagaaataatgtaa
gaactggaggtcaggggtgctgtcagaagttgtcttcagaacatgaaatg
gcttattacatgcacgaattcataataaaaataactatggttacttgtgc
aaggcctgcataaatcaagccagccaaagttctggcatagatgagaaaga
tattccccaggcctcatcccttactgaagagccattttcacatgatagct
tctgaggggaagaagaatcatccttgttttgaagacgtggtcattgatat
gtttccatgtttcagtggactgtccattacctgtacgtataccacagcat
tattagagggaaaaagttaattataattttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88907249_88908259
seq2: B6Ng01-019M15.b_48_1051 (reverse)

seq1  GGCTGTGGCAATCAAACTCTTAGCAGCTGTGGTACCCTACCTAAGACCTG  50
      |||||||||| |  || | ||||||||| ||   |||| |||||||||||
seq2  GGCTGTGGCATT--AAATATTAGCAGCTTTG--TCCCTCCCTAAGACCTG  46

seq1  CACAACCAGTTCTGATTATGATTATCATTGTGGCTGACATTTGAAAGCTG  100
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  CACAACCAGTTCTGATTATGATTATCATT-TGGCTGACA-TTGAAAGCTG  94

seq1  TATTATACTTCTTGGGCCTAGGGTAGCTTTCTAACCTCAGCACTGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACTTCTTGGGCCTAGGGTAGCTTTCTAACCTCAGCACTGGGGCA  144

seq1  TGTAATACTGGGAATTATGGCTTTGTGAGTACTTCTTTGGGGCTGTGTGT  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTAATACTGGG-ATTATGGCTTTGTGAGTACTTCTTTGGGGCTGTGTGT  193

seq1  TGTTTCTAGGGAAATCAGTGAGTTTAAATAGGGTCACCTATGAGAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGGGAAATCAGTGAGTTTAAATAGGGTCACCTATGAGAGAGTG  243

seq1  GGTGAGGAGATATTCTCTGGAGTTTGGGTAATTTATTAGTGGCTTACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAGATATTCTCTGGAGTTTGGGTAATTTATTAGTGGCTTACACC  293

seq1  ACTGAATAATACCCATCCCCTACAACCATAAACTTCTTATAGATCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAATACCCATCCCCTACAACCATAAACTTCTTATAGATCCTTTT  343

seq1  GAGGAGTAGTAATTGATTGGCAAGTGTCAGCTAGACATACAAACTCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTAGTAATTGATTGGCAAGTGTCAGCTAGACATACAAACTCAAGT  393

seq1  TGAACCTGTGCATGATACGGATGATGTAAAGCAACTTGAAGCAAAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGTGCATGATACGGATGATGTAAAGCAACTTGAAGCAAAAGTCA  443

seq1  TTTTCTTTGTTGGAAAGGTGCTAAATTGAAGGCCTGTCGTACTCAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGTTGGAAAGGTGCTAAATTGAAGGCCTGTCGTACTCAAAAAC  493

seq1  TGGAGAAGTGATTTATGGAAATTTAGGAAATCATGGCCACCCCTTTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGTGATTTATGGAAATTTAGGAAATCATGGCCACCCCTTTCCTC  543

seq1  ATCCTCATTTTGACTAATGTGGCTCTGTAAAGTATTTCCATATGGTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATTTTGACTAATGTGGCTCTGTAAAGTATTTCCATATGGTCTTC  593

seq1  AGCAATGGTAAGGTATGGTATGTACATAGTTACAGTAAGACCTCCATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGTAAGGTATGGTATGTACATAGTTACAGTAAGACCTCCATGAT  643

seq1  TTATTTCTCTGATAGTGAAAAAAGTCATCTCAGCTGACAAGAGTCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCTGATAGTGAAAAAAGTCATCTCAGCTGACAAGAGTCAGATT  693

seq1  CTTAGTGGTAAGTTATTTGTGTATAAGAGGTTTGTAGCTTCAACGAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGTAAGTTATTTGTGTATAAGAGGTTTGTAGCTTCAACGAATTA  743

seq1  TGATTTTTTTCCTCAATAGTAAAAAAAAACACACTATTTCAGAAGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTCCTCAATAGTAAAAAAAAACACACTATTTCAGAAGTGACA  793

seq1  TTTCAAGTTAAAATAAATTGAAGCATCCTTAAGCCACACGATACTATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTAAAATAAATTGAAGCATCCTTAAGCCACACGATACTATAGA  843

seq1  ATCATTTTTTATTTTATCAACAGTGTGAAGGAATGCTTCAACACATGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTTATTTTATCAACAGTGTGAAGGAATGCTTCAACACATGCTT  893

seq1  ATATTTCTAATTCTTTTTTTAGGTGAGCAGTATATTTTCACCAAAATATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTAATTCTTTTTTTAGGTGAGCAGTATATTTTCACCAAAATATG  943

seq1  TATGAGTTTGCCATATCACAGTTTTCAGTTTCCCTCAACAGTATATAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTGCCATATCACAGTTTTCAGTTTCCCTCAACAGTATATAGAG  993

seq1  ATACAGAATTC  1011
      |||||||||||
seq2  ATACAGAATTC  1004

seq1: chr18_88780762_88781742
seq2: B6Ng01-019M15.g_68_1050

seq1  GAATTCTCAGGGGGCTCTCTGAATTGTTTTATTCTAATCAGAGTCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGGGCTCTCTGAATTGTTTTATTCTAATCAGAGTCTTCAA  50

seq1  TAATAAAGTGCAGCCACATGCAATGAGTGCACATGGGCCACAATTTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTGCAGCCACATGCAATGAGTGCACATGGGCCACAATTTCAGT  100

seq1  GCTCAGTGAGGAGCAGGCTTTTCTAGTATCTTCTTGCTGATAAAAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGAGGAGCAGGCTTTTCTAGTATCTTCTTGCTGATAAAAACAAC  150

seq1  TAACATTGGGATCCCACTCCCTAAGAAGACAAATAACTTCTAATATGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGGGATCCCACTCCCTAAGAAGACAAATAACTTCTAATATGTCC  200

seq1  TTGATCCAAAAGGGGAAGCATTTAAAGCCACATTTCAGTATTTGGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCAAAAGGGGAAGCATTTAAAGCCACATTTCAGTATTTGGGCAAG  250

seq1  GGTGCCAATACTATGTAATAGAGAAAGAAAGTTCTTTAAAAAACCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAATACTATGTAATAGAGAAAGAAAGTTCTTTAAAAAACCAAAAG  300

seq1  AAAAAATTGTGTCTACATTCAAAGAATGAAATTGAAATTATACTGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGTGTCTACATTCAAAGAATGAAATTGAAATTATACTGAATGC  350

seq1  TATATATAAGCTTATGTTTTCTCTAAATTCTGTGTGTATGTGTGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAGCTTATGTTTTCTCTAAATTCTGTGTGTATGTGTGACATAA  400

seq1  AAATATAAGTAAAGTTGTCTAGTCAAACAAAACAAACAGGAGGGTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGTAAAGTTGTCTAGTCAAACAAAACAAACAGGAGGGTAATTT  450

seq1  GAAAAGGGAGGGTACAGGGTATGGAAGGGATATGCTCTGGTATTTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAGGGTACAGGGTATGGAAGGGATATGCTCTGGTATTTTAATT  500

seq1  TTTGTGGTCCATTGCATTAATATTTCTCTTATTTTCATTCTCCTAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTCCATTGCATTAATATTTCTCTTATTTTCATTCTCCTAGGACA  550

seq1  TCTTGAGGCACATCATTAGTCGATTAAAATATCTCATGGATATTTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGCACATCATTAGTCGATTAAAATATCTCATGGATATTTTTAAA  600

seq1  GTTTTTATATCTGTTCATTAAAACGTTTATTGAAGGCAGAAATAATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATATCTGTTCATTAAAACGTTTATTGAAGGCAGAAATAATGTAA  650

seq1  GAACTGGAGGTCAGGGGTGCTGTCAGAAGTTGTCTTCAGAACATGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGGTCAGGGGTGCTGTCAGAAGTTGTCTTCAGAACATGAAATG  700

seq1  GCTTATTACATGCACGAATTCATAATAAAAATAACTATGGTTACTTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTACATGCACGAATTCATAATAAAAATAACTATGGTTACTTGTGC  750

seq1  AAGGCCTGCATAAATCAAGCCAGCCAAAGTTCTGGCATAGATGAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGCATAAATCAAGCCAGCCAAAGTTCTGGCATAGATGAGAAAGA  800

seq1  TATTCCCCAGGCCTCATCCCTTACTGAAGAGCCATTTTCACATGATAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCAGGCCTCATCCCTTACTGAAGAGCCATTTTCACATGATAGCT  850

seq1  TCTGAGGGGAAGAAGAATCATCC-TGTTTTGAAGACGTGGTCACTGATAT  899
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TCTGAGGGGAAGAAGAATCATCCTTGTTTTGAAGACGTGGTCATTGATAT  900

seq1  GTTTCCCATGTTTCAGTGGACTGTCCAATACCTGTACGTATACAGACAGC  949
      |||| |||||||||||||||||||||| |||||||||||||||  |||||
seq2  GTTT-CCATGTTTCAGTGGACTGTCCATTACCTGTACGTATAC-CACAGC  948

seq1  ATTAATTAGATGGGAAAAG-----TATAATTTATAAT  981
      ||| |||||| || |||||     |||||||| ||||
seq2  ATT-ATTAGAGGGAAAAAGTTAATTATAATTT-TAAT  983