BAC Information

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BAC

Clone NameB6Ng01-021N21
Chromosome18 (Build37)
Map Location 65,747,665 - 65,889,705
singlet/doubletdoublet
Overlap geneZfp532, 5330437I02Rik
Upstream geneAtp8b1, LOC629480, Nedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820
Downstream geneSec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021N21.bB6Ng01-021N21.g
ACCDH854256DH854257
length878775
definitionDH854256|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N21, 5' end.DH854257|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,747,665 - 65,748,542)(65,888,933 - 65,889,705)
sequence
gaattcagatttgggcacagttgcctgggaccaggccctctgcctcttta
gctccttgggtgtggctgactgggctagaggtcagatttgtcggatggct
gcatcagttctcattcgagaaaccagctctaagattaccagtatgtacct
tgcaccagggagttttgaacattcgaatggtggtgagtctttcttgttca
tataaacctctgaggaaatgaggctgttctcgggggcaccgtgtggaagc
aagaaggaatagggagatgctctcgtctttccgtgctctgctgaggagaa
cagtgcagtaaatcaaaagtgatatgtgaatgagagattaacaactcatc
tctcacagtttctggttatggggcagaaggtttatcatgcacgccccggt
tgaataaggatcatttaaaacaggaattgtttattctctgggattttcag
tttaatattttcagactgttgttgacctttgtagcagtcaccttggaaac
cgaagtcacaggtaagaagacttgtcatcaacatagagccgtgattacag
gaaggcaggtgtgaagagtttggggtccctaagataagggcagtataatg
ctcttttcttgtagggtaaaatccgtcaagggggcttgcacagtttaaaa
agttggggtaaagctcagcgttgggtagcatgcaagaggtcctggggtcc
acctctagcaccagaaaggaaaaaacagttggagggtagaatgtttaaga
aggcacaaaagagtctccaccaggagcacctgcaggcactggagtatccg
gtggggtttgtttcttcgtttgtttgttttcttcaagcagggtctcactc
tgtagccctggctgtcctgaaattcagt
gaattccaaagtaggtggtgggggaacacgcacatcttcccagcacttgg
gaggcagaggcaggtggatctctgtgagttgagaggcctactggtctcca
gagagctttctaggacagccaaggccatacaaacagaccctgtcttgcaa
ggggtcgaggaggggggcagggagacacagaattccagttttgtttcttt
gattttgagatatggtctcacctagcttcctcaaacccctaatgtagctg
gagataaccttgaactcttgaccttcctgcctccgactctcaagtgctgg
gattacaagaagatcccagaattcttgtctggcacattctcatggcttgg
tggtgagcaggtctgtgaatcccttgaccctttggcatttagcccctgat
cctcatgggagctcctctgaatggtaaatgtgtttcctgttgcacagcaa
ggatgtctgtgttgggtcctacttggaaaggatcctggtgggttggggga
atgccttagacttcctttgaaaagcagcgagttggattccttataatagg
aaccaaatgcacaaagacgcctaaatgagagcacagggagcaggaagtgg
ggcagccagctctggttctggcctcctcttcatttgcaggaaaggatgaa
tctgggcccatcctttcttctccgagtgggctggcaccactgccggcctt
tgctaacagagcctaagtcttgctccgtgtgtggaaatgcactgatgatc
ccacaaggaaggggcttggagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65747665_65748542
seq2: B6Ng01-021N21.b_50_927

seq1  GAATTCAGATTTGGGCACAGTTGCCTGGGACCAGGCCCTCTGCCTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTGGGCACAGTTGCCTGGGACCAGGCCCTCTGCCTCTTTA  50

seq1  GCTCCTTGGGTGTGGCTGACTGGGCTAGAGGTCAGATTTGTCGGATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGGTGTGGCTGACTGGGCTAGAGGTCAGATTTGTCGGATGGCT  100

seq1  GCATCAGTTCTCATTCGAGAAACCAGCTCTAAGATTACCAGTATGTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTTCTCATTCGAGAAACCAGCTCTAAGATTACCAGTATGTACCT  150

seq1  TGCACCAGGGAGTTTTGAACATTCGAATGGTGGTGAGTCTTTCTTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAGGGAGTTTTGAACATTCGAATGGTGGTGAGTCTTTCTTGTTCA  200

seq1  TATAAACCTCTGAGGAAATGAGGCTGTTCTCGGGGGCACCGTGTGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCTCTGAGGAAATGAGGCTGTTCTCGGGGGCACCGTGTGGAAGC  250

seq1  AAGAAGGAATAGGGAGATGCTCTCGTCTTTCCGTGCTCTGCTGAGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAATAGGGAGATGCTCTCGTCTTTCCGTGCTCTGCTGAGGAGAA  300

seq1  CAGTGCAGTAAATCAAAAGTGATATGTGAATGAGAGATTAACAACTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTAAATCAAAAGTGATATGTGAATGAGAGATTAACAACTCATC  350

seq1  TCTCACAGTTTCTGGTTATGGGGCAGAAGGTTTATCATGCACGCCCCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTTTCTGGTTATGGGGCAGAAGGTTTATCATGCACGCCCCGGT  400

seq1  TGAATAAGGATCATTTAAAACAGGAATTGTTTATTCTCTGGGATTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGGATCATTTAAAACAGGAATTGTTTATTCTCTGGGATTTTCAG  450

seq1  TTTAATATTTTCAGACTGTTGTTGACCTTTGTAGCAGTCACCTTGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTTCAGACTGTTGTTGACCTTTGTAGCAGTCACCTTGGAAAC  500

seq1  CGAAGTCACAGGTAAGAAGACTTGTCATCAACATAGAGCCGTGATTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTCACAGGTAAGAAGACTTGTCATCAACATAGAGCCGTGATTACAG  550

seq1  GAAGGCAGGTGTGAAGAGTTTGGGGTCCCTAAGATAAGGGCAGTATAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGTGTGAAGAGTTTGGGGTCCCTAAGATAAGGGCAGTATAATG  600

seq1  CTCTTTTCTTGTAGGGTAAAATCCGTCAAGGGGGCTTGCACAGTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTGTAGGGTAAAATCCGTCAAGGGGGCTTGCACAGTTTAAAA  650

seq1  AGTTGGGGTAAAGCTCAGCGTTGGGTAGCATGCAAGAGGTCCTGGGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGTAAAGCTCAGCGTTGGGTAGCATGCAAGAGGTCCTGGGGTCC  700

seq1  ACCTCTAGCACCAGAAAGGAAAAAACAGTTGGAGGGTAGAATGTTTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGCACCAGAAAGGAAAAAACAGTTGGAGGGTAGAATGTTTAAGA  750

seq1  AGGCACAAAAGAGTCTCCACCAGGAGCACCTGCAGGCACTGGAGTATCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAAAGAGTCTCCACCAGGAGCACCTGCAGGCACTGGAGTATCCG  800

seq1  GTGGGGTTTGTTTCTTCGTTTGTTTGTTTTCTTCAGGCAGGGTCTCACTC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGGGTTTGTTTCTTCGTTTGTTTGTTTTCTTCAAGCAGGGTCTCACTC  850

seq1  TGTAGCCCTGGCTGTCCTGAAATTCAGT  878
      ||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGAAATTCAGT  878

seq1: chr18_65888933_65889705
seq2: B6Ng01-021N21.g_69_843 (reverse)

seq1  TCTTCTCCATGCCCCTTCCTTGTGGGATCATCAGTGCATTTCCACACACG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCAAGCCCCTTCCTTGTGGGATCATCAGTGCATTTCCACACACG  50

seq1  GAGCAAGACCTAGGCTCTGCTTAGCAAAGGCCGGCAGTGGTGCCAG-CCA  99
      ||||||||| ||||||||| |||||||||||||||||||||||||| |||
seq2  GAGCAAGACTTAGGCTCTG-TTAGCAAAGGCCGGCAGTGGTGCCAGCCCA  99

seq1  CTCGGAGAAGAAAGGAT-GGCCCAGATTCATCCTTTCCTGC-AATGAAGA  147
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CTCGGAGAAGAAAGGATGGGCCCAGATTCATCCTTTCCTGCAAATGAAGA  149

seq1  GGAGGCCAGAACCAGAGCTGGCTGCCCCACTTCCTGCTCCCTGTGCTCTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGAACCAGAGCTGGCTGCCCCACTTCCTGCTCCCTGTGCTCTC  199

seq1  ATTTAGGCGTCTTTGTGCATTTGGTTCCTATTATAAGGAATCCAACTCGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCGTCTTTGTGCATTTGGTTCCTATTATAAGGAATCCAACTCGC  249

seq1  TGCTTTTCAAAGGAAGTCTAAGGCATTCCCCCAACCCACCAGGATCCTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCAAAGGAAGTCTAAGGCATTCCCCCAACCCACCAGGATCCTTT  299

seq1  CCAAGTAGGACCCAACACAGACATCCTTGCTGTGCAACAGGAAACACATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGGACCCAACACAGACATCCTTGCTGTGCAACAGGAAACACATT  349

seq1  TACCATTCAGAGGAGCTCCCATGAGGATCAGGGGCTAAATGCCAAAGGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCAGAGGAGCTCCCATGAGGATCAGGGGCTAAATGCCAAAGGGT  399

seq1  CAAGGGATTCACAGACCTGCTCACCACCAAGCCATGAGAATGTGCCAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATTCACAGACCTGCTCACCACCAAGCCATGAGAATGTGCCAGAC  449

seq1  AAGAATTCTGGGATCTTCTTGTAATCCCAGCACTTGAGAGTCGGAGGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTGGGATCTTCTTGTAATCCCAGCACTTGAGAGTCGGAGGCAG  499

seq1  GAAGGTCAAGAGTTCAAGGTTATCTCCAGCTACATTAGGGGTTTGAGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAAGAGTTCAAGGTTATCTCCAGCTACATTAGGGGTTTGAGGAA  549

seq1  GCTAGGTGAGACCATATCTCAAAATCAAAGAAACAAAACTGGAATTCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTGAGACCATATCTCAAAATCAAAGAAACAAAACTGGAATTCTGT  599

seq1  GTCTCCCTGCCCCCCTCCTCGACCCCTTGCAAGACAGGGTCTGTTTGTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTGCCCCCCTCCTCGACCCCTTGCAAGACAGGGTCTGTTTGTAT  649

seq1  GGCCTTGGCTGTCCTAGAAAGCTCTCTGGAGACCAGTAGGCCTCTCAACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGCTGTCCTAGAAAGCTCTCTGGAGACCAGTAGGCCTCTCAACT  699

seq1  CACAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAAGATGTGCGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAAGATGTGCGTG  749

seq1  TTCCCCCACCACCTACTTTGGAATTC  773
      ||||||||||||||||||||||||||
seq2  TTCCCCCACCACCTACTTTGGAATTC  775