BAC Information

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BAC

Clone NameB6Ng01-023C20
Chromosome18 (Build37)
Map Location 4,532,404 - 4,649,971
singlet/doubletdoublet
Overlap geneLOC100039354, LOC433157, 9430020K01Rik
Upstream geneLOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931
Downstream geneLOC268988, Svil, Zfp438, LOC100039442, Zeb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023C20.bB6Ng01-023C20.g
ACCDH855169DH855170
length1,058957
definitionDH855169|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C20, 5' end.DH855170|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,648,909 - 4,649,971)(4,532,404 - 4,532,946)
sequence
gaattcctgttcttaccagcattctcctgccaacctcccacccccatttt
ctttcataaggaaccacacacacaggtatagttgtgctcagatgggacaa
ccattacagggacaacatcggtgcaaaggcaagatgggtcaaatgctaca
ggtgaacatgtaaacagaggagcacgtgctcccttccaactccctgaact
ctacatgctacttttaaagtacatggcactcttgtgtcgggtggcatgaa
cgagctctacaaagctccaggatgcttcctattggccaagcactttaaaa
aagaagaaaatcagagccaggagatgctgtgcttgccttgatgagactgt
ttatgggggctggggggatgcaggtctgctacgcagctctgtgctgacta
ccaccagacctcagatcccaaatgtaggccaagcaaaattcagccccatc
ttttactctctttctctctctcccaacccagccaaacaggaagagttgat
ttacttacatataacccaatgtcaaactcccaagtcaaaagaaaactctg
ggtcaactcaaagcttaccgtgcctcaggagttctagaagtgctttggtg
ctccctgtggcctcttggcctgctgatgcggttttcagagttgctcacgt
gtcctgtccccagggatgtcctactgtgcgtatgggctgtagcgccatcc
ttgtacccattcaataggcctttggccagctcggggtcctgtccttgtcg
acctgcatctctctgatttgtcctcacatggtgctgcggcatctcgggct
ggtttgtatctatgagaatcaggaaatccttccacactatacatgctgca
gcgtatcaaacttcaaaagcttcaaccttcacggtggcaggacccatcac
tggaaggcaacaaagagctgcatttatgaacagtccctactgttccaagt
ggacacccaccctcctcagatccacatggaaaagggcgatgcacttgctg
tgccacccaagtctagtatccaggtccttccgaatgaggctagcagggta
cacactta

gaattcaacttgtggttttagaaaccataattaactcgtgatttgtagtc
tctcctcccccagcctgaaacctgcttgctcggggtggagcttcctgctc
attcgttctgccacgcccactgctggaacctgtggagccacacacgtgca
cctttctactggacccgagattattcggcgggaatcgggtcccctccccc
ttccttcataactagtgtcccaacaataaaatttgagctttgatcagaat
gaaattgtcttagctccgttttttcttccgccccgactagattcctctct
tacagctcgagcggccttctcagtcgaaccgttcacgttgtgagcttctg
gcggccgcaacattttggcgccagaactgggacctgaagaatggcagaga
gatgctaagaggaacgctgcattggagctccacaggaaaggatcttcgta
ttggacataggagcaacagacaggtacacatgctagcgctagcttaaaat
ttcagttttgtaaagtgttgctgaggatgcagtaggatacgaattaagct
tgaatcagtgctaacccaacgctggttctgcttgggtcagcagcgtgtta
atcggaactagaaacggaaacaggcaggttagccgcagctttttaggaag
ctgcttaggtggaagaagaaagggtttaaagtcatggatcaggcggttgc
ccatagttttcaggagttgtttcaggccagaggagtaaggcttgaagtac
aattagtaaaaaattttttaggtaagatagatagctgttgcccatggttc
aaggaagaagaaacactagattgtggaacctgggagaaagttggtgaggc
cttaaaaatcactcagcagataattttaccctaggcctctgggcgctcgt
aaatgatgcaataaaagatgccacttctccagggctaagttgccccaagc
ggagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4648909_4649971
seq2: B6Ng01-023C20.b_31_1087 (reverse)

seq1  AAGTGTTGTACCCTGCTGGCCTCTTCTGGAAGGACCTGGATGCT-GACTT  49
      ||||| ||||||||||| ||||| |  |||||||||||||| || ||| |
seq2  AAGTG-TGTACCCTGCTAGCCTCATTCGGAAGGACCTGGATACTAGAC-T  48

seq1  TGGGTGGCACAGCAAGTGCATCGCACCTTTTCCATGTGGATGCTGAGGAG  99
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGGGTGGCACAGCAAGTGCATCGC-CCTTTTCCATGTGGAT-CTGAGGAG  96

seq1  GGTGGGTGTCCACTTGGTACAGGTAAGGGACTGTTCATAAATGCAGCTCT  149
      ||||||||||||||||| ||||   |||||||||||||||||||||||||
seq2  GGTGGGTGTCCACTTGGAACAG--TAGGGACTGTTCATAAATGCAGCTCT  144

seq1  TTGTTGTCCTTCCAGTGATGGGTCCTGCCACCGTGATGGTTGAAGCTTTT  199
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGTTG-CCTTCCAGTGATGGGTCCTGCCACCGTGAAGGTTGAAGCTTTT  193

seq1  GAGGTTTGATGACGCTGCAGCATGTATAGTGTGGAA-GATCTCCTGATTT  248
      || ||||||| ||||||||||||||||||||||||| ||| |||||| ||
seq2  GAAGTTTGAT-ACGCTGCAGCATGTATAGTGTGGAAGGATTTCCTGA-TT  241

seq1  CTCATGGATACAAACCAGCCCGAGATGCCGCAGCACCATGTGAGGACAAA  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGATACAAACCAGCCCGAGATGCCGCAGCACCATGTGAGGACAAA  291

seq1  TCAGAGAGATGCAGGTCGACAAGGACAGGACCCCGAGCTGGCC-AAGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGAGAGATGCAGGTCGACAAGGACAGGACCCCGAGCTGGCCAAAGGCC  341

seq1  TATTGAATGGGTACAAGGATGGCGCTACAGCCCATACGCACAGTAGGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATGGGTACAAGGATGGCGCTACAGCCCATACGCACAGTAGGACA  391

seq1  TCCCTGGGGACAGGACACGTGAGCAACTCTGAAAACCGCATCAGCAGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGGACAGGACACGTGAGCAACTCTGAAAACCGCATCAGCAGGCC  441

seq1  AAGAGGCCACAGGGAGCACCAAAGCACTTCTAGAACTCCTGAGGCACGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCACAGGGAGCACCAAAGCACTTCTAGAACTCCTGAGGCACGGT  491

seq1  AAGCTTTGAGTTGACCCAGAGTTTTCTTTTGACTTGGGAGTTTGACATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGAGTTGACCCAGAGTTTTCTTTTGACTTGGGAGTTTGACATTG  541

seq1  GGTTATATGTAAGTAAATCAACTCTTCCTGTTTGGCTGGGTTGGGAGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATGTAAGTAAATCAACTCTTCCTGTTTGGCTGGGTTGGGAGAGA  591

seq1  GAGAAAGAGAGTAAAAGATGGGGCTGAATTTTGCTTGGCCTACATTTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAGTAAAAGATGGGGCTGAATTTTGCTTGGCCTACATTTGGG  641

seq1  ATCTGAGGTCTGGTGGTAGTCAGCACAGAGCTGCGTAGCAGACCTGCATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGTCTGGTGGTAGTCAGCACAGAGCTGCGTAGCAGACCTGCATC  691

seq1  CCCCCAGCCCCCATAAACAGTCTCATCAAGGCAAGCACAGCATCTCCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCCCCCATAAACAGTCTCATCAAGGCAAGCACAGCATCTCCTGG  741

seq1  CTCTGATTTTCTTCTTTTTTAAAGTGCTTGGCCAATAGGAAGCATCCTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTTCTTCTTTTTTAAAGTGCTTGGCCAATAGGAAGCATCCTGG  791

seq1  AGCTTTGTAGAGCTCGTTCATGCCACCCGACACAAGAGTGCCATGTACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTAGAGCTCGTTCATGCCACCCGACACAAGAGTGCCATGTACTT  841

seq1  TAAAAGTAGCATGTAGAGTTCAGGGAGTTGGAAGGGAGCACGTGCTCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAGCATGTAGAGTTCAGGGAGTTGGAAGGGAGCACGTGCTCCTC  891

seq1  TGTTTACATGTTCACCTGTAGCATTTGACCCATCTTGCCTTTGCACCGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATGTTCACCTGTAGCATTTGACCCATCTTGCCTTTGCACCGAT  941

seq1  GTTGTCCCTGTAATGGTTGTCCCATCTGAGCACAACTATACCTGTGTGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCCTGTAATGGTTGTCCCATCTGAGCACAACTATACCTGTGTGTG  991

seq1  TGGTTCCTTATGAAAGAAAATGGGGGTGGGAGGTTGGCAGGAGAATGCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTTATGAAAGAAAATGGGGGTGGGAGGTTGGCAGGAGAATGCTG  1041

seq1  GTAAGAACAGGAATTC  1063
      ||||||||||||||||
seq2  GTAAGAACAGGAATTC  1057


seq1: chr18_4532404_4532946
seq2: B6Ng01-023C20.g_68_610

seq1  GAATTCAACTTGTGGTTTTAGAAACCATAATTAACTCGTGATTTGTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGTGGTTTTAGAAACCATAATTAACTCGTGATTTGTAGTC  50

seq1  TCTCCTCCCCCAGCCTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCCCAGCCTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTC  100

seq1  ATTCGTTCTGCCACGCCCACTGCTGGAACCTGTGGAGCCACACACGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCTGCCACGCCCACTGCTGGAACCTGTGGAGCCACACACGTGCA  150

seq1  CCTTTCTACTGGACCCGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACTGGACCCGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCC  200

seq1  TTCCTTCATAACTAGTGTCCCAACAATAAAATTTGAGCTTTGATCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATAACTAGTGTCCCAACAATAAAATTTGAGCTTTGATCAGAAT  250

seq1  GAAATTGTCTTAGCTCCGTTTTTTCTTCCGCCCCGACTAGATTCCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTCTTAGCTCCGTTTTTTCTTCCGCCCCGACTAGATTCCTCTCT  300

seq1  TACAGCTCGAGCGGCCTTCTCAGTCGAACCGTTCACGTTGTGAGCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCGAGCGGCCTTCTCAGTCGAACCGTTCACGTTGTGAGCTTCTG  350

seq1  GCGGCCGCAACATTTTGGCGCCAGAACTGGGACCTGAAGAATGGCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCGCAACATTTTGGCGCCAGAACTGGGACCTGAAGAATGGCAGAGA  400

seq1  GATGCTAAGAGGAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAGAGGAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTA  450

seq1  TTGGACATAGGAGCAACAGACAGGTACACATGCTAGCGCTAGCTTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATAGGAGCAACAGACAGGTACACATGCTAGCGCTAGCTTAAAAT  500

seq1  TTCAGTTTTGTAAAGTGTTGCTGAGGATGCAGTAGGATACGAA  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTTGTAAAGTGTTGCTGAGGATGCAGTAGGATACGAA  543


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