BAC Information

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BAC

Clone NameB6Ng01-023E21
Chromosome18 (Build37)
Map Location 31,701,266 - 31,840,710
singlet/doubletdoublet
Overlap geneSlc25a46, Sap130
Upstream geneLOC433168, Rit2, EG666130, Syt4, LOC383420
Downstream geneLOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E21.bB6Ng01-023E21.g
ACCDH855263DH855264
length966738
definitionDH855263|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E21, 5' end.DH855264|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,839,733 - 31,840,710)(31,701,266 - 31,701,999)
sequence
gaattcactatgaagactcggctgcctttgatctcgcagaaatctacctg
cttctgcctctcaacctctgggtttaaaggtatgaaccaccttttggggc
tcacatatactatttttaatgtgaatctgtaagtaaattctaagcaactc
atcttacaaaggcaaaactaaatactgaagaattacctgaggttacacaa
agcctgacagtggcagagccaagagtaaaacccaggcagacttcttccat
gctttgttctgtgtttacacaagtaacagcgctcctgtggttttctcatt
ctgctgtgaggactggcgcaggttgtgtggctggcttttgtttgtccccc
cccccccccccatttcatcaaagagttaaacttacctgaggttttcccct
caggctgtggctgctgattagccattgctgctggctgaagcccctgagtg
ttgattggggctgctgaatggattcctggggtgccaattggtgctggctg
gatccctgatgtcccaatgggggctggctggattccctgtgtactgatgg
gtgctggctggatcccctggatatgtcgggcatgtgaggcatccactgtc
atcagctgcatggggttcaggtggactgtagatgctacaccaacaccagt
ttgagctgtgatggtggagtttggggcttgagcagaaactgaaaataaca
cagaaggtcagctccagatacacacagaggcaacagcaaagtgaccagtt
tcctccctgggtagggtagggggtacagcagggcgttttcaccagcatgt
aacaaggcttagggttcagtcctcagttgctcttagactcttacagaaaa
ctatgtacacagaattgttttcttttattacctaccaatttcttttggaa
atatcaggatcaataattaaaagttgggcctatactgatatacttaaatc
ttaggagaatgatgca
gaattctttggcaagttttacgatcactctcttaagtcctatgtcctgga
gttcatctgaacaattctcattggcaaacatttctactggactggcagac
tttggagagaagatgctggcttggcctttcatctggttggtattcctgtg
atgtgatatgggcatgtggactttcattatttgttttgagttgtttatgg
attaaaaaaacaagttgggggaaaaaaaactgaaggttgggtctagagac
tgagaatttcttgagtgtaatgaagtctagtagacagaagggactgggct
ggtataccaggtgtgcttcccattccaaaacaatgtaatgtgttggggta
gataggcctgaatagaaagattggctatgatgtgggagagtcctgtagtt
tcatggagaggtggagagaatcctgacttaagtctctataggctttgtag
tgagggcagggaaagccagaacaagctggcacactggttgtgagtcccag
gaatggggtggtagagactagattaagagctgagtagatgcagaaggggt
gggtcctgatacaacctaagaggttgaaacgaggaggtggtcagagtggg
cagagacactggcagtgagacccagggtagatctattggggatagagagg
ggcaatcaatttgtaggggatactcatcatagtaaaacttagcacaggat
gtctgggtgtctgtgtattggatagggtggtggaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31839733_31840710
seq2: B6Ng01-023E21.b_41_1006 (reverse)

seq1  TGCATCATCCTCCTAAGTACTAAGATTATCAGTATAAGCCCAACTTTCTA  50
      |||||||| ||||||||   ||||  |||||||||| |||||||||| ||
seq2  TGCATCATTCTCCTAAGATTTAAGTATATCAGTATAGGCCCAACTTT-TA  49

seq1  ATTTTATTGTATCCCTGATAATTTTGCAAAAAGAAATTGGTAGGTAATAA  100
      |  |||||| || |||||||   || | ||||||||||||||||||||||
seq2  A--TTATTG-AT-CCTGATA---TTTCCAAAAGAAATTGGTAGGTAATAA  92

seq1  AAAAGAAAAACAATTCTGTGTACATAGTTTTCTGTAAGGAGTCTAAGAGC  150
      ||    ||||||||||||||||||||||||||||||| ||||||||||||
seq2  AA---GAAAACAATTCTGTGTACATAGTTTTCTGTAA-GAGTCTAAGAGC  138

seq1  AGCTGAGGACTGAACCCTAAGCCTTGTTACATGCTGGTGAAAACGCCCTG  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGACTGAACCCTAAGCCTTGTTACATGCTGGTGAAAACGCCCTG  188

seq1  CTGTACCCCCTACCCTACCCAGGGAGGAAACTGGTCACTTTGCTGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCCCTACCCTACCCAGGGAGGAAACTGGTCACTTTGCTGTTGCC  238

seq1  TCTGTGTGTATCTGGAGCTGACCTTCTGTGTTATTTTCAGTTTCTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTATCTGGAGCTGACCTTCTGTGTTATTTTCAGTTTCTGCTCA  288

seq1  AGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTTGGTGTAGCATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTTGGTGTAGCATCTA  338

seq1  CAGTCCACCTGAACCCCATGCAGCTGATGACAGTGGATGCCTCACATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCTGAACCCCATGCAGCTGATGACAGTGGATGCCTCACATGCC  388

seq1  CGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCA  438

seq1  GCCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCACCAATTGGCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCACCAATTGGCACCC  488

seq1  CAGGAATCCATTCAGCAGCCCCAATCAACACTCAGGGGCTTCAGCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCCATTCAGCAGCCCCAATCAACACTCAGGGGCTTCAGCCAGCA  538

seq1  GCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAAACCTCAGGTAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAAACCTCAGGTAAGTT  588

seq1  TAACTCTTTGATGAAATGGGGGGGGGGGGGGGGACAAACAAAAGCCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTGATGAAATGGGGGGGGGGGGGGGGACAAACAAAAGCCAGCC  638

seq1  ACACAACCTGCGCCAGTCCTCACAGCAGAATGAGAAAACCACAGGAGCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACCTGCGCCAGTCCTCACAGCAGAATGAGAAAACCACAGGAGCGC  688

seq1  TGTTACTTGTGTAAACACAGAACAAAGCATGGAAGAAGTCTGCCTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTGTGTAAACACAGAACAAAGCATGGAAGAAGTCTGCCTGGGTT  738

seq1  TTACTCTTGGCTCTGCCACTGTCAGGCTTTGTGTAACCTCAGGTAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTGGCTCTGCCACTGTCAGGCTTTGTGTAACCTCAGGTAATTCT  788

seq1  TCAGTATTTAGTTTTGCCTTTGTAAGATGAGTTGCTTAGAATTTACTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTAGTTTTGCCTTTGTAAGATGAGTTGCTTAGAATTTACTTAC  838

seq1  AGATTCACATTAAAAATAGTATATGTGAGCCCCAAAAGGTGGTTCATACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACATTAAAAATAGTATATGTGAGCCCCAAAAGGTGGTTCATACC  888

seq1  TTTAAACCCAGAGGTTGAGAGGCAGAAGCAGGTAGATTTCTGCGAGATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCCAGAGGTTGAGAGGCAGAAGCAGGTAGATTTCTGCGAGATCA  938

seq1  AAGGCAGCCGAGTCTTCATAGTGAATTC  978
      ||||||||||||||||||||||||||||
seq2  AAGGCAGCCGAGTCTTCATAGTGAATTC  966

seq1: chr18_31701266_31701999
seq2: B6Ng01-023E21.g_71_805

seq1  TTCTTTGGCAAGTTTTACGATCACTCTCTTAAGTCCTATGTCCTGGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGCAAGTTTTACGATCACTCTCTTAAGTCCTATGTCCTGGAGTT  50

seq1  CATCTGAACAATTCTCATTGGCAAACATTTCTACTGGACTGGCAGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAACAATTCTCATTGGCAAACATTTCTACTGGACTGGCAGACTTT  100

seq1  GGAGAGAAGATGCTGGCTTGGCCTTTCATCTGGTTGGTATTCCTGTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGATGCTGGCTTGGCCTTTCATCTGGTTGGTATTCCTGTGATG  150

seq1  TGATATGGGCATGTGGACTTTCATTATTTGTTTTGAGTTGTTTATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGGCATGTGGACTTTCATTATTTGTTTTGAGTTGTTTATGGATT  200

seq1  AAAAAAACAAGTTGGGGGAAAAAAAACTGAAGGTTGGGTCTAGAGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAGTTGGGGGAAAAAAAACTGAAGGTTGGGTCTAGAGACTGA  250

seq1  GAATTTCTTGAGTGTAATGAAGTCTAGTAGACAGAAGGGACTGGGCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTGAGTGTAATGAAGTCTAGTAGACAGAAGGGACTGGGCTGGT  300

seq1  ATACCAGGTGTGCTTCCCATTCCAAAACAATGTAATGTGTTGGGGTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGTGTGCTTCCCATTCCAAAACAATGTAATGTGTTGGGGTAGAT  350

seq1  AGGCCTGAATAGAAAGATTGGCTATGATGTGGGAGAGTCCTGTAGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAATAGAAAGATTGGCTATGATGTGGGAGAGTCCTGTAGTTTCA  400

seq1  TGGAGAGGTGGAGAGAATCCTGACTTAAGTCTCTATAGGCTTTGTAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGTGGAGAGAATCCTGACTTAAGTCTCTATAGGCTTTGTAGTGA  450

seq1  GGGCAGGGAAAGCCAGAACAAGCTGGCACACTGGTTGTGAGTCCCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGAAAGCCAGAACAAGCTGGCACACTGGTTGTGAGTCCCAGGAA  500

seq1  TGGGGTGGTAGAGACTAGATTAAGAGCTGAGTAGATGCAGAAGGGGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGTAGAGACTAGATTAAGAGCTGAGTAGATGCAGAAGGGGTGGG  550

seq1  TCCTGATACAACCTAAGAGGTTGAAACGAGGAGGTGGTCAGAGTGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATACAACCTAAGAGGTTGAAACGAGGAGGTGGTCAGAGTGGGCAG  600

seq1  AGACACTGGCAGTGAGACCCAGGGTAGATCTATTGGGGATAGAGAGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGCAGTGAGACCCAGGGTAGATCTATTGGGGATAGAGAGGGGC  650

seq1  AATCAATTTGTAGGGGATACTCATCATAGTAAAACTTAGCACAGGATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTTGTAGGGGATACTCATCATAGTAAAACTTAGCACAGGATGTC  700

seq1  T-GGTGTCTGTGTATTGGATAGGGTGGTGGAGGCA  734
      | |||||||||||||||||||||||||||||||||
seq2  TGGGTGTCTGTGTATTGGATAGGGTGGTGGAGGCA  735