BAC Information

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BAC

Clone NameB6Ng01-023M05
Chromosome18 (Build37)
Map Location 18,957,278 - 19,094,566
singlet/doubletdoublet
Overlap geneLOC100040658
Upstream geneLOC100040647
Downstream geneLOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023M05.bB6Ng01-023M05.g
ACCDH855593DH855594
length9711,018
definitionDH855593|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M05, 5' end.DH855594|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,957,278 - 18,958,256)(19,093,518 - 19,094,566)
sequence
gaattccaaagcagagttcatttctcaacagtgtctgtattaaatagtaa
ttaaactatggcataggggtttttttttctatctgtaaccactgagtatt
aagtcagttcatgatcacattttacctgtgttgataaagtcctgttttgc
aagggcaagcaaagcctcattgatcttcccagagatcttcaatctgattg
cactttccctaagtgatttcactattagcactttaaccactgagtttaag
gtgttaatccaagttaaattacaattaatttcactttgaacttttattac
ctcttgagatgtttctagtaatagatgatttcttaaagcaaagtttcaca
gaaaatatgagaagaaaatatttgagaactgttgtctagagggaaaaaat
actgcattttgataataatgtgaaggttaaatttgtcacgttttcaggga
attttttaattacaatatttataacctgattatgttcggtattccacaca
aatatttcttaaatgctcatgcagttctatataattaaaatggaaaacat
gaagggatagggaaataatggaaacacaattttaagtggtcagaaagggt
gggagagttagagtaagaaaaagagagagggtaaaactgccaaaggtgtt
ttgaaaataaactgtgtaagtattgtatatttgaaggttattgtagctac
atttcatagataatggtactcctctgagaagccacaggttttcaaatgta
tgggatatttcctttatcatagttgttgatcaggggtgtttttgagcttc
ccattataattccagctattgacattgctcttactcttggttaccactga
gaaactagtgcagaaatgttgctgaaaacaccaaaatttggttcatagga
gaatccaagttgttagaaacaggatttttctcatgcaggtagtttcaaag
tcaccatgctctatgcaggtt
gaattcaggacttctggaagaccagtaagtgctcttaaccactatgccat
ctcttctattatgtttctaaaagtgactatacattttaaggccatacatt
gtggttcatctttcttgaaaaatgttggctgataagacagaaccattcag
acaagattacattgtgatcaaagagtagttggacctcccattggatattg
tgtttcaataaatactgaagtgtcaaaattattttgcatagcaacaacta
atttgaatatgatcaatttgtaatacattctacatttatatacaaaccta
tcgtgattacctaagaaattcgttaatagaaattagaaacttaagaataa
agaactaggaatatattggagagtagtaatgtactggacttgaaaataga
tggcctgagattgggccattcaagcaacatatcaaaatgccaacccagca
cagtagcctgcacttgtaatcccattacttaatattctgcaaaggcagac
tgataactgtagtctgctacccagcacacccatctaacttgggaatttcc
aggttattgagtgtcctgatttaaaacaaaggcatttaaagttgccttct
ggttttgatacttatgtatccacatgtacatattcacagatatacaagtc
acactcagaaacacacagaaaaatatttccttatgtaaacaattttaaaa
ataagtggagtataatactatatataaatttgtatgtatgcatgcatctt
aataagtatatatttaatatatgtgcatatatttatataggtaaagatca
ttaagttctagaattcttaactaactccagattcctgattcagtggaata
agttagctcattgttaagcctaacgatatatgattaggaatctgtaacca
tcatgatagaaggagataaggacctgcaagttattctcttgcttcaaatg
caggtcttgtggtactcaagggcacaatacatacacatgtgtgtgtgtgt
atgtgcgtgcacggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18957278_18958256
seq2: B6Ng01-023M05.b_44_1014

seq1  GAATTCCAAAGCAGAGTTCATTTCTCAACAGTGTCTGTATTAAATAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCAGAGTTCATTTCTCAACAGTGTCTGTATTAAATAGTAA  50

seq1  TTAAACTATGGCATAGGGGTTTTTTTTTCTATCTGTAACCACTGAGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATGGCATAGGGGTTTTTTTTTCTATCTGTAACCACTGAGTATT  100

seq1  AAGTCAGTTCATGATCACATTTTACCTGTGTTGATAAAGTCCTGTTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTTCATGATCACATTTTACCTGTGTTGATAAAGTCCTGTTTTGC  150

seq1  AAGGGCAAGCAAAGCCTCATTGATCTTCCCAGAGATCTTCAATCTGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGCAAAGCCTCATTGATCTTCCCAGAGATCTTCAATCTGATTG  200

seq1  CACTTTCCCTAAGTGATTTCACTATTAGCACTTTAACCACTGAGTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCCTAAGTGATTTCACTATTAGCACTTTAACCACTGAGTTTAAG  250

seq1  GTGTTAATCCAAGTTAAATTACAATTAATTTCACTTTGAACTTTTATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATCCAAGTTAAATTACAATTAATTTCACTTTGAACTTTTATTAC  300

seq1  CTCTTGAGATGTTTCTAGTAATAGATGATTTCTTAAAGCAAAGTTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGATGTTTCTAGTAATAGATGATTTCTTAAAGCAAAGTTTCACA  350

seq1  GAAAATATGAGAAGAAAATATTTGAGAACTGTTGTCTAGAGGGAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGAGAAGAAAATATTTGAGAACTGTTGTCTAGAGGGAAAAAAT  400

seq1  ACTGCATTTTGATAATAATGTGAAGGTTAAATTTGTCACGTTTTCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTTGATAATAATGTGAAGGTTAAATTTGTCACGTTTTCAGGGA  450

seq1  ATTTTTTAATTACAATATTTATAACCTGATTATGTTCGGTATTCCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATTACAATATTTATAACCTGATTATGTTCGGTATTCCACACA  500

seq1  AATATTTCTTAAATGCTCATGCAGTTCTATATAATTAAAATGGAAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTAAATGCTCATGCAGTTCTATATAATTAAAATGGAAAACAT  550

seq1  GAAGGGATAGGGAAATAATGGAAACACAATTTTAAGTGGTCAGAAAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATAGGGAAATAATGGAAACACAATTTTAAGTGGTCAGAAAGGGT  600

seq1  GGGAGAGTTAGAGTAAGAAAAAGAGAGAGGGTAAAACTGCCAAAGGTG-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGAGAGTTAGAGTAAGAAAAAGAGAGAGGGTAAAACTGCCAAAGGTGTT  650

seq1  TTGAAAATAAACTGTGTAAGTATTGTATATTTGAAGGTTAATTGTAGCTA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGAAAATAAACTGTGTAAGTATTGTATATTTGAAGGTT-ATTGTAGCTA  699

seq1  CATTTCATAGATAATGGTACTCCTCTGAGAAGCCACAGGTTTTCAAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATAGATAATGGTACTCCTCTGAGAAGCCACAGGTTTTCAAATGT  749

seq1  ATGGGATATTTCCTTTATCATAGTTGTTGATCAGGGGTGTTTTGAAGCTT  799
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  ATGGGATATTTCCTTTATCATAGTTGTTGATCAGGGGTGTTTTTGAGCTT  799

seq1  CCCATTATAATTCCAGCTATTGACATTGCTCTTACTCTTGGTTACCACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTATAATTCCAGCTATTGACATTGCTCTTACTCTTGGTTACCACTG  849

seq1  AGAAACTAGTGCAGAAATTGTGCTGAAAACACCAAAAATTTGGTTCATAG  899
      ||||||||||||||||||  ||||||||||||| ||||||||||||||||
seq2  AGAAACTAGTGCAGAAATGTTGCTGAAAACACC-AAAATTTGGTTCATAG  898

seq1  GAGAAATCCAAGCTGTTAGAAACAGGAATTTTTCTCACTGCATGGTAGTT  949
      ||| |||||||| ||||||||||||| |||||||||| |||| ||||| |
seq2  GAG-AATCCAAGTTGTTAGAAACAGG-ATTTTTCTCA-TGCA-GGTAG-T  943

seq1  TTCAGAGTATAACAATGCTCTATGCAGGTT  979
      |||| ||  | || ||||||||||||||||
seq2  TTCAAAG--TCACCATGCTCTATGCAGGTT  971

seq1: chr18_19093518_19094566
seq2: B6Ng01-023M05.g_67_1084 (reverse)

seq1  CACACACACACACACACACACACACACACACACGTGCACGCACATACACA  50
                                ||||| ||||||||||||||||||
seq2  --------------------------CACAC-CGTGCACGCACATACACA  23

seq1  CACACACATGTGTATGTATTGTGCCCTGGAGTACCACAAGACCTGCATTT  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACACACATGTGTATGTATTGTGCCCTTGAGTACCACAAGACCTGCATTT  73

seq1  GGAAGCAAGGGAATAACTTGCAGGTCCCTTATCTCCTTCTATCATGTGGG  150
       |||||||| ||||||||||||||| ||||||||||||||||||||  ||
seq2  -GAAGCAAGAGAATAACTTGCAGGT-CCTTATCTCCTTCTATCATGATGG  121

seq1  TTACAGGATTCCTAATCATATATCGTTAGGCTTAACAATGAGCTAACTTA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACA-GATTCCTAATCATATATCGTTAGGCTTAACAATGAGCTAACTTA  170

seq1  TTCCACTGAATCAGGAATCTGGAGTTAGTTAAGAATTCTAGAACTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGAATCAGGAATCTGGAGTTAGTTAAGAATTCTAGAACTTAATG  220

seq1  ATCTTTTACCTATATAAATATATGCACATATATTAAATATATACTTATTA  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTTACCTATATAAATATATGCACATATATTAAATATATACTTATTA  269

seq1  AGATGCATGCATACATACAAATTTATATATAGTATTATACTCCACTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATGCATACATACAAATTTATATATAGTATTATACTCCACTTATT  319

seq1  TTTAAAATTGTTTACATGAGGAAATATTTTTCTGTGTGTTTCTGAGTGTG  400
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTAAAATTGTTTACATAAGGAAATATTTTTCTGTGTGTTTCTGAGTGTG  369

seq1  ACTTGTATATCTGTGAATATGTACATGTGGATACATAAGTATCAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATATCTGTGAATATGTACATGTGGATACATAAGTATCAAAACCA  419

seq1  GAAGGCAACTTTAAATGCCTTTGTTTTAAATCAGGACACTCAATAACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAACTTTAAATGCCTTTGTTTTAAATCAGGACACTCAATAACCTG  469

seq1  GAAATTCCCAAGTTAGATGGGTGTGCTGGGTAGCAGACTACAGTTATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCCAAGTTAGATGGGTGTGCTGGGTAGCAGACTACAGTTATCAG  519

seq1  TCTGCCTTTGCAGAATATTAAGTAATGGGATTACAAGTGCAGGCTACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTGCAGAATATTAAGTAATGGGATTACAAGTGCAGGCTACTGT  569

seq1  GCTGGGTTGGCATTTTGATATGTTGCTTGAATGGCCCAATCTCAGGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTGGCATTTTGATATGTTGCTTGAATGGCCCAATCTCAGGCCAT  619

seq1  CTATTTTCAAGTCCAGTACATTACTACTCTCCAATATATTCCTAGTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAAGTCCAGTACATTACTACTCTCCAATATATTCCTAGTTCTT  669

seq1  TATTCTTAAGTTTCTAATTTCTATTAACGAATTTCTTAGGTAATCACGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAAGTTTCTAATTTCTATTAACGAATTTCTTAGGTAATCACGAT  719

seq1  AGGTTTGTATATAAATGTAGAATGTATTACAAATTGATCATATTCAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTATATAAATGTAGAATGTATTACAAATTGATCATATTCAAATT  769

seq1  AGTTGTTGCTATGCAAAATAATTTTGACACTTCAGTATTTATTGAAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGCTATGCAAAATAATTTTGACACTTCAGTATTTATTGAAACAC  819

seq1  AATATCCAATGGGAGGTCCAACTACTCTTTGATCACAATGTAATCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAATGGGAGGTCCAACTACTCTTTGATCACAATGTAATCTTGTC  869

seq1  TGAATGGTTCTGTCTTATCAGCCAACATTTTTCAAGAAAGATGAACCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTTCTGTCTTATCAGCCAACATTTTTCAAGAAAGATGAACCACA  919

seq1  ATGTATGGCCTTAAAATGTATAGTCACTTTTAGAAACATAATAGAAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGCCTTAAAATGTATAGTCACTTTTAGAAACATAATAGAAGAGA  969

seq1  TGGCATAGTGGTTAAGAGCACTTACTGGTCTTCCAGAAGTCCTGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGTGGTTAAGAGCACTTACTGGTCTTCCAGAAGTCCTGAATTC  1018