BAC Information

Click to search

BAC

Clone NameB6Ng01-029I10
Chromosome18 (Build37)
Map Location 51,357,521 - 51,358,625
singlet/doubletsinglet
Overlap genePrr16
Upstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
Downstream geneEG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I10.bB6Ng01-029I10.g
ACCDH859704DH859705
length1,0921,215
definitionDH859704|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I10, 5' end.DH859705|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtgatccatgtgtgatgtgcaattcaacattgtcaaaattc
agggggagcaggaccatttgaaataaattgaaatgtcaaaatactgtaaa
agaaatccaagcatgatataattgtaagtttaattgcaagtataacaagc
ccaatgctcaaaacaatgaaatagaatgagatttttagcaggattgagct
ttgagaatataagtactaggtcttgaaatgtgtgatggaattcataaagc
aatttgttagaaaaggctctactttcttgcatcagaggatgctttatgtt
atgggtacaagtttcacttcttatataagagaaagattagctagaaatcg
cccagccagcaagtgttagagacagttctaaagcagtagctctcaacttg
tgtgttgcaacccttctagggaccacatatcctacatagcagatatttgc
actgcaattcataacagcaaacttacagttatgaagtagcaatgggataa
ttttatggttgtgggtcatgataacatgaggaactgttttaaagcgtcac
agcatcagggaggttgaaaaccactgctaaaggctctcccagtttttttt
cctccaagtcttattttttcatgcatgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgatgtccatgtatatgcaaagaaaaccattattttttttacttaga
gtaaaacagacatatttaaccaatgataatattttaattcaaatatctca
tttctcacatttgtattttaatcagttggaaataaaatatggtagaacca
atcttttgacattattaggtctatatttttctccatattttatgcaaggg
ataatcatttgaaccgctttgataacctggtctcccatacagaacatacc
atcttatctcaatggaatgtatagttatagcagttccactttacagacaa
ggctacccagacttctacattaaagaatttctgtctccctaactatgaac
gatcaccagtgacaactgggcactcacacaaggctgaacagggtatgagt
ggtgtaaaccttaaactgtccggaaattatttccatctatca
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcaatgcgcagagaggcagtacgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
aattgccgagtcggtccgtaaatacggaaccaatcctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgctgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgaatccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcaaacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactggtcaattaacaaaagttgtccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgtctctgatagaacagctaatctatgagcaagcca
caagggagtgccgagcggccatagccccaagaaagaacaaggcttacaga
ctggctcagggtctgtcgagagcttggggacctctaccatgcaggcttag
cggccgtcatcttcaatccaaaccgcttcatgggcaaatatcagaggact
gtttactgcgaaagcttggcatttagaagatgcagagctccgaaaaaatg
aggactctcacttttgctttatgtggcaaggtaatctagacctgactggt
cgctggagattaaggcgatctttctcacttgtatcatccttatgtcaacg
gactagcctgtccagcttaaatgaaccgttgcagacggaagctcgatgca
ctcacgtactcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51357521_51358625
seq2: B6Ng01-029I10.b_38_1129 (reverse)

seq1  TGATAGATGGGAATAATTCCCGGACAGTTTAAGGCTCTTCAGCCACTCAT  50
      |||||||||| ||||||| ||||||||||||||| | | || ||||||||
seq2  TGATAGATGGAAATAATTTCCGGACAGTTTAAGG-TTTACA-CCACTCAT  48

seq1  ACACTTGTTTCAGCCTTGTGTTGAAGTGCTCAAGTTTGTCATGTGTGATC  100
      || ||   |||||||||||||   ||||| ||   ||||||   ||||||
seq2  ACCCT--GTTCAGCCTTGTGT--GAGTGCCCA--GTTGTCACTGGTGATC  92

seq1  TGTCATAAGTTAAGTGGAGCAAGAAAATCTTTTAATGTAGGAAGTCTGGG  150
        |||| |||||   ||||  ||||| || ||||||||| ||||||||||
seq2  GTTCAT-AGTTA--GGGAGACAGAAATTC-TTTAATGTA-GAAGTCTGGG  137

seq1  TAGCCTTGTCTGTAAAGTGGGAACTGCTATAACTATACATTCCATTGAGA  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCCTTGTCTGTAAAGT-GGAACTGCTATAACTATACATTCCATTGAGA  186

seq1  TAAGATGGTATGTTCTGTATGTGGAGACCAGGTTATCAAAGCGGTTCAAA  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAGATGGTATGTTCTGTATG-GGAGACCAGGTTATCAAAGCGGTTCAAA  235

seq1  TGATTATCCCTTGCAT-AAATATGGAGAAAAATATAGACCTAATAATGTC  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATTATCCCTTGCATAAAATATGGAGAAAAATATAGACCTAATAATGTC  285

seq1  AAAAGATTGGTTCTACCATATTTTATTTCCAACTGATTAAAATAC-AATG  348
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAGATTGGTTCTACCATATTTTATTTCCAACTGATTAAAATACAAATG  335

seq1  TGAGAAATGAGATATTTGAATTAAAATATTATCATTGGTTAAATATGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGAGATATTTGAATTAAAATATTATCATTGGTTAAATATGTCT  385

seq1  GTTTTACTCTAAGTAAAAAAAATAATGGTTTTCTTTGCATATACATGGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTCTAAGTAAAAAAAATAATGGTTTTCTTTGCATATACATGGAC  435

seq1  ATCACACACACACACACACACACACACACACATGCATGAAAAAATAAGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACACACACACACACACACACACACATGCATGAAAAAATAAGAC  485

seq1  TTGGAGGAAAAAAAACTGGGAGAGCCTTTAGCAGTGGTTTTCAACCTCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAAAAAAAACTGGGAGAGCCTTTAGCAGTGGTTTTCAACCTCCC  535

seq1  TGATGCTGTGACGCTTTAAAACAGTTCCTCATGTTATCATGACCCACAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGTGACGCTTTAAAACAGTTCCTCATGTTATCATGACCCACAAC  585

seq1  CATAAAATTATCCCATTGCTACTTCATAACTGTAAGTTTGCTGTTATGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTATCCCATTGCTACTTCATAACTGTAAGTTTGCTGTTATGAA  635

seq1  TTGCAGTGCAAATATCTGCTATGTAGGATATGTGGTCCCTAGAAGGGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGCAAATATCTGCTATGTAGGATATGTGGTCCCTAGAAGGGTTG  685

seq1  CAACACACAAGTTGAGAGCTACTGCTTTAGAACTGTCTCTAACACTTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACAAGTTGAGAGCTACTGCTTTAGAACTGTCTCTAACACTTGCT  735

seq1  GGCTGGGCGATTTCTAGCTAATCTTTCTCTTATATAAGAAGTGAAACTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCGATTTCTAGCTAATCTTTCTCTTATATAAGAAGTGAAACTTG  785

seq1  TACCCATAACATAAAGCATCCTCTGATGCAAGAAAGTAGAGCCTTTTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATAACATAAAGCATCCTCTGATGCAAGAAAGTAGAGCCTTTTCTA  835

seq1  ACAAATTGCTTTATGAATTCCATCACACATTTCAAGACCTAGTACTTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGCTTTATGAATTCCATCACACATTTCAAGACCTAGTACTTATA  885

seq1  TTCTCAAAGCTCAATCCTGCTAAAAATCTCATTCTATTTCATTGTTTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGCTCAATCCTGCTAAAAATCTCATTCTATTTCATTGTTTTGA  935

seq1  GCATTGGGCTTGTTATACTTGCAATTAAACTTACAATTATATCATGCTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGCTTGTTATACTTGCAATTAAACTTACAATTATATCATGCTTG  985

seq1  GATTTCTTTTACAGTATTTTGACATTTCAATTTATTTCAAATGGTCCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTTACAGTATTTTGACATTTCAATTTATTTCAAATGGTCCTGC  1035

seq1  TCCCCCTGAATTTTGACAATGTTGAATTGCACATCACACATGGATCACAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGAATTTTGACAATGTTGAATTGCACATCACACATGGATCACAG  1085

seq1  AGAATTC  1105
      |||||||
seq2  AGAATTC  1092