BAC Information

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BAC

Clone NameB6Ng01-031E24
Chromosome18 (Build37)
Map Location 44,589,572 - 44,717,361
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031E24.bB6Ng01-031E24.g
ACCDH860969DH860970
length895952
definitionDH860969|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E24, 5' end.DH860970|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,589,572 - 44,590,467)(44,716,398 - 44,717,361)
sequence
gaattctcttcctccagcagggctattctttgcttgagcattctcacttg
ggtctcgtgtcgctccaccatggccatcatctgagattccagcttcttca
gcttgttttgatgcttcttctttgctttctcgtaagcagccaccagattg
ctgtgtgggaacagagggaaaggaggaaagattcatcccaaggaatgagt
gataccctgtgcttcgagctgggtcaccaggtcgagagcactgctctgaa
gagcttggtttgcctctccaggaagaatccaaggtccagagataagctgc
ccaggtctaggattttggcttaagcagacttatccaggccaaggctgtag
aggagttacccaacacctaacacagtaagagttagccaacagcccaaagt
ggccccatccaaaacataagaaagaggttgctaaattttagaaattttac
tagggatagttgtttcatgactgctagctacagatggtcaagtatgagtt
acataaagtgttatctcacccaggacaggggcagaagtctatactccaac
tttctaatgctttgggctataagaaaatgctatcagctaaagaatatggg
gcttatattctgggtcctaggcctactgtagatgagcccagctatgtctc
catattctttttgctccaaaataggatattgggtcccttcagggtctact
gtgttaccatgagctggagtttctaaagagtgacttgagggaggagatat
acacgcacacagagagacagagacccttctgggagtccgaaaatctcatt
cgaggtgggggggggggggggcgcgtgtctaaatgatggcagagtggatt
gtaaatccaggtgcctataagctaatgatatttacgaaactaaaa
gaattccaatagagatggctttgtgctgtggggaacaaggaaaggaaaac
agaatgcagcaattaaggaggagatatctagaagggttttactgttcgcg
gatagaagtggcatgggagaatacggaggttagcaccacagtatagaaga
cagactgcgtgacactacttaccagagcgccagatcaaattttaattacg
agatgcctagagaggaaggaagccagatgttggcagaggtttagccatcc
ctgcaaagaacagacttgggagcaaagagaaaatactcatttagccaaca
gttatggcagagtggtttgtgacattgtttctttcagatgtccttcctgc
agagaccctcatgggtaagttgtctgtcctggggcctcccctctccatgc
ttgcagtcatcttctggtttctaaaatctccattgcccgccccccccccc
ccatgactttggtgtttgaattggacatttaaccatttaaaaatcttctg
caaaatgtccgaaatcctgtgacctaggctacttgtttctgaaccagacc
agcagatagggagagtctttgagcatcaagaccacatgcagaagggtttt
ccacagtgtatccccgtgcacattctgactcagcagcttctcttcctcct
cagtgtccattcttaggccacctcctgtgtggttctctttgtctacccag
tgcatggtttgatttgaaagccccacctctgcctctttctatgctggcaa
tgaaagacccttgtggggagacccccactcaagtcccaagactgtgtgta
tccaaggaatcacgaaagaccatcttgatgcaacacacgagcagtttatg
atggagctcaggctgacacgtatctctcgcagagaaaaagagagtcgacc
ctagctcaagttaggatttatataggaaaagatggtggcggggggggggg
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44589572_44590467
seq2: B6Ng01-031E24.b_48_942

seq1  GAATTCTCTTCCTCCAGCAGGGCTATTCTTTGCTTGAGCATTCTCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTCCAGCAGGGCTATTCTTTGCTTGAGCATTCTCACTTG  50

seq1  GGTCTCGTGTCGCTCCACCATGGCCATCATCTGAGATTCCAGCTTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGTGTCGCTCCACCATGGCCATCATCTGAGATTCCAGCTTCTTCA  100

seq1  GCTTGTTTTGATGCTTCTTCTTTGCTTTCTCGTAAGCAGCCACCAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTGATGCTTCTTCTTTGCTTTCTCGTAAGCAGCCACCAGATTG  150

seq1  CTGTGTGGGAACAGAGGGAAAGGAGGAAAGATTCATCCCAAGGAATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGAACAGAGGGAAAGGAGGAAAGATTCATCCCAAGGAATGAGT  200

seq1  GATACCCTGTGCTTCGAGCTGGGTCACCAGGTCGAGAGCACTGCTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTGTGCTTCGAGCTGGGTCACCAGGTCGAGAGCACTGCTCTGAA  250

seq1  GAGCTTGGTTTGCCTCTCCAGGAAGAATCCAAGGTCCAGAGATAAGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGTTTGCCTCTCCAGGAAGAATCCAAGGTCCAGAGATAAGCTGC  300

seq1  CCAGGTCTAGGATTTTGGCTTAAGCAGACTTATCCAGGCCAAGGCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTAGGATTTTGGCTTAAGCAGACTTATCCAGGCCAAGGCTGTAG  350

seq1  AGGAGTTACCCAACACCTAACACAGTAAGAGTTAGCCAACAGCCCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTACCCAACACCTAACACAGTAAGAGTTAGCCAACAGCCCAAAGT  400

seq1  GGCCCCATCCAAAACATAAGAAAGAGGTTGCTAAATTTTAGAAATTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATCCAAAACATAAGAAAGAGGTTGCTAAATTTTAGAAATTTTAC  450

seq1  TAGGGATAGTTGTTTCATGACTGCTAGCTACAGATGGTCAAGTATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATAGTTGTTTCATGACTGCTAGCTACAGATGGTCAAGTATGAGTT  500

seq1  ACATAAAGTGTTATCTCACCCAGGACAGGGGCAGAAGTCTATACTCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTGTTATCTCACCCAGGACAGGGGCAGAAGTCTATACTCCAAC  550

seq1  TTTCTAATGCTTTGGGCTATAAGAAAATGCTATCAGCTAAAGAATAT-GG  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTCTAATGCTTTGGGCTATAAGAAAATGCTATCAGCTAAAGAATATGGG  600

seq1  GCTTATATTCT-GGTCCTAGGCCTACTGTAGATGAGCCCAGCTATGTCTC  648
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTTATATTCTGGGTCCTAGGCCTACTGTAGATGAGCCCAGCTATGTCTC  650

seq1  CATATTCTTTTTGCTCCAAAATAGGATATTGGGTCCCTTCA-GGTCTACT  697
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATATTCTTTTTGCTCCAAAATAGGATATTGGGTCCCTTCAGGGTCTACT  700

seq1  GTGTTACCATGAGCTGGAGTTTCTAAAGAGTGACTTGAGGGAGGAGATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACCATGAGCTGGAGTTTCTAAAGAGTGACTTGAGGGAGGAGATAT  750

seq1  ACACGCACACAGAGAGACAGAGACCCTTCTGGGAGTCCGAAAATCTCATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACACAGAGAGACAGAGACCCTTCTGGGAGTCCGAAAATCTCATT  800

seq1  CGAGGT-TGGGGGGGGGGGGGCGCGTGTCTTAAATTGATGGCAGAGTGGA  846
      ||||||  ||||||||||||||||||||||  || |||||||||||||||
seq2  CGAGGTGGGGGGGGGGGGGGGCGCGTGTCT--AAATGATGGCAGAGTGGA  848

seq1  TTGTAAAATCCAGGTGCCTTAGTAAGCTAGTGATATTTACAAAACTAAAA  896
      |||| ||||||||||||||   ||||||| |||||||||| |||||||||
seq2  TTGT-AAATCCAGGTGCCT--ATAAGCTAATGATATTTACGAAACTAAAA  895

seq1: chr18_44716398_44717361
seq2: B6Ng01-031E24.g_65_1016 (reverse)

seq1  ATCCCCCCCCCCCCGCCCAACACTCTTTTCCTATATAAATCCCTAACTTT  50
      || ||||||||||||||  ||  ||||||||||||||||| |||||| ||
seq2  AT-CCCCCCCCCCCGCC--ACCATCTTTTCCTATATAAAT-CCTAAC-TT  45

seq1  GAGCCTTAGGGTCGACTCCTCTTGTCTCCTGCGAGAGATACGTGTCAGCC  100
      ||||  ||||||||||| ||||| |   |||||||||||||||||||| |
seq2  GAGC--TAGGGTCGACT-CTCTTTTTCTCTGCGAGAGATACGTGTCAG-C  91

seq1  CGGAGCTCCATCATTAAACTGCCTCGTGTGTTTGCATCAAGATGGTCTTT  150
      | ||||||||||| ||||||| |||||||| |||||||||||||||||||
seq2  CTGAGCTCCATCA-TAAACTG-CTCGTGTG-TTGCATCAAGATGGTCTTT  138

seq1  CGTGATTCCTTGGATACACACAGTCTTGGGACTTGAGTGGGGGTCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTCCTTGGATACACACAGTCTTGGGACTTGAGTGGGGGTCTCCCC  188

seq1  ACAAGGGTCTTTCATTGCCAGCATAGAAAGAGGCAGAGGTGGGGCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTCTTTCATTGCCAGCATAGAAAGAGGCAGAGGTGGGGCTTTCA  238

seq1  AATCAAACCATGCACTGGGTAGACAAAGAGAACCACACAGGAGGTGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACCATGCACTGGGTAGACAAAGAGAACCACACAGGAGGTGGCCT  288

seq1  AAGAATGGACACTGAGGAGGAAGAGAAGCTGCTGAGTCAGAATGTGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGACACTGAGGAGGAAGAGAAGCTGCTGAGTCAGAATGTGCACG  338

seq1  GGGATACACTGTGGAAAACCCTTCTGCATGTGGTCTTGATGCTCAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACACTGTGGAAAACCCTTCTGCATGTGGTCTTGATGCTCAAAGAC  388

seq1  TCTCCCTATCTGCTGGTCTGGTTCAGAAACAAGTAGCCTAGGTCACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATCTGCTGGTCTGGTTCAGAAACAAGTAGCCTAGGTCACAGGA  438

seq1  TTTCGGACATTTTGCAGAAGATTTTTAAATGGTTAAATGTCCAATTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGACATTTTGCAGAAGATTTTTAAATGGTTAAATGTCCAATTCAAA  488

seq1  CACCAAAGTCATGGGGGGGGGGGGGCGGGCAATGGAGATTTTAGAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGTCATGGGGGGGGGGGGGCGGGCAATGGAGATTTTAGAAACCA  538

seq1  GAAGATGACTGCAAGCATGGAGAGGGGAGGCCCCAGGACAGACAACTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGACTGCAAGCATGGAGAGGGGAGGCCCCAGGACAGACAACTTAC  588

seq1  CCATGAGGGTCTCTGCAGGAAGGACATCTGAAAGAAACAATGTCACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGGTCTCTGCAGGAAGGACATCTGAAAGAAACAATGTCACAAAC  638

seq1  CACTCTGCCATAACTGTTGGCTAAATGAGTATTTTCTCTTTGCTCCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCCATAACTGTTGGCTAAATGAGTATTTTCTCTTTGCTCCCAAG  688

seq1  TCTGTTCTTTGCAGGGATGGCTAAACCTCTGCCAACATCTGGCTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTTGCAGGGATGGCTAAACCTCTGCCAACATCTGGCTTCCTTC  738

seq1  CTCTCTAGGCATCTCGTAATTAAAATTTGATCTGGCGCTCTGGTAAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGGCATCTCGTAATTAAAATTTGATCTGGCGCTCTGGTAAGTAG  788

seq1  TGTCACGCAGTCTGTCTTCTATACTGTGGTGCTAACCTCCGTATTCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGCAGTCTGTCTTCTATACTGTGGTGCTAACCTCCGTATTCTCCC  838

seq1  ATGCCACTTCTATCCGCGAACAGTAAAACCCTTCTAGATATCTCCTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTTCTATCCGCGAACAGTAAAACCCTTCTAGATATCTCCTCCTT  888

seq1  AATTGCTGCATTCTGTTTTCCTTTCCTTGTTCCCCACAGCACAAAGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGCATTCTGTTTTCCTTTCCTTGTTCCCCACAGCACAAAGCCAT  938

seq1  CTCTATTGGAATTC  964
      ||||||||||||||
seq2  CTCTATTGGAATTC  952