BAC Information

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BAC

Clone NameB6Ng01-031H05
Chromosome18 (Build37)
Map Location 37,443,958 - 37,445,017
singlet/doubletsinglet
Overlap genenone
Upstream genePura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1
Downstream genePcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031H05.bB6Ng01-031H05.g
ACCDH861062DH861063
length9661,049
definitionDH861062|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H05, 5' end.DH861063|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagcccaattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagttcc
ctgtctgatttagaataggtaaagatcctttcccaatctgttggttgcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaatctta
tgaggtcccatttgtcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggatttcccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccccttagatttgaccttagtacaggggttaggaatggatcaattcgta
ttcttctacatgataacggccagttgtgccaacaccatttgttgaaaatg
ctgtctttttcccactggatggttttagctcccttgtccaagatcaagtg
accataagtgtgtgtgtttatttctgggtcttcaattctattctattggt
ctacttgtctgttgctataccagtaccatgcagtttttttgtttgtttgt
ttgtttgttttttgttttttgttttttttgttttttgttttttgtttttt
tgttttttgttttttgttttgtttttatcacaattgctctgtagtacagc
tttaggtcatgcatggtgattccacctgaggattttttatccttaagcag
agtttttgctatcctagttttttgttactccagatgaatgtgcagattgc
cctttctaattcatttaagaattgagttgaaattttgatggggattgcat
tgaatctgtagattgcttttggaaagatagccatttttactatattgatc
ctgcaatacatgagcatgggagatatttcaggttctgacatttctttatt
tctatcttcagagact
gaattctctcccactgaggcccaaccagtcagtttagctagggaaagggg
atccgatggcaggcaatagaatcagagatagtccctgcttcagttgtaag
ggaacccacatgaagaccaaatggcatatctacaaatgtgtagggggtct
agatccagcccctgcacgctttttggttggtggttcagtctttgtgagct
actatgggcccaggttagttgactctatgtgtcttcttttggtatccctt
gacccctttggttcccttaatccctatgctccactctcccagaggtttct
ccagctccccctcatgtttagctatggatctgtgcttctgtctacatctg
ctgttggatgaagcctcttgggagacagcatcagcctttgtttcgttggg
ctacacttttagcacccaaataatacataagcatgtgatccaaatttgtt
ctagccaattttggtttctttctttacttttatgactctgtactttttcc
tccaaacattactatttctactggtattctagttcatactaagtcatgaa
actgtgaatactgtcttaactgtaacaggagacttccagacaaggagaac
catcattagtgttccctttaaaaacctctacacgacaatgcattctgtta
atacctgacctaccctgctgaaagtcagtatctgcctctatcactatatt
tctcatacctctttagtgtttgatatctgtctctcctggtctattctttt
aaatttatatatttacttattcaccttacatcccaatatcagccccctct
tcccagtacccagaacctccccctactccccttcctcttctcctctgaga
agggatagctttcctgggttcgccccctggccccatccctaaccctgtca
atcactgcaggacaaggcacatcctctcactgaggtcagacattttaaaa
ttataaaaacaatcaaagccagagacactagaaagcgatgtagcgatccc
atcctgggaactgcagaatccaaagcaattaatcctaaagccgtaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37443958_37445017
seq2: B6Ng01-031H05.g_68_1110

seq1  GAATTCTCTCCCACTGAGGCCCAACCAGTCAGTTTAGCTAGGGAAAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCACTGAGGCCCAACCAGTCAGTTTAGCTAGGGAAAGGGG  50

seq1  ATCCGATGGCAGGCAATAGAATCAGAGATAGTCCCTGCTTCAGTTGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGATGGCAGGCAATAGAATCAGAGATAGTCCCTGCTTCAGTTGTAAG  100

seq1  GGAACCCACATGAAGACCAAATGGCATATCTACAAATGTGTAGGGGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCACATGAAGACCAAATGGCATATCTACAAATGTGTAGGGGGTCT  150

seq1  AGATCCAGCCCCTGCACGCTTTTTGGTTGGTGGTTCAGTCTTTGTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCCCCTGCACGCTTTTTGGTTGGTGGTTCAGTCTTTGTGAGCT  200

seq1  ACTATGGGCCCAGGTTAGTTGACTCTATGTGTCTTCTTTTGGTATCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGGCCCAGGTTAGTTGACTCTATGTGTCTTCTTTTGGTATCCCTT  250

seq1  GACCCCTTTGGTTCCCTTAATCCCTATGCTCCACTCTCCCAGAGGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTTTGGTTCCCTTAATCCCTATGCTCCACTCTCCCAGAGGTTTCT  300

seq1  CCAGCTCCCCCTCATGTTTAGCTATGGATCTGTGCTTCTGTCTACATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCCCTCATGTTTAGCTATGGATCTGTGCTTCTGTCTACATCTG  350

seq1  CTGTTGGATGAAGCCTCTTGGGAGACAGCATCAGCCTTTGTTTCGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATGAAGCCTCTTGGGAGACAGCATCAGCCTTTGTTTCGTTGGG  400

seq1  CTACACTTTTAGCACCCAAATAATACATAAGCATGTGATCCAAATTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTTTAGCACCCAAATAATACATAAGCATGTGATCCAAATTTGTT  450

seq1  CTAGCCAATTTTGGTTTCTTTCTTTACTTTTATGACTCTGTACTTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAATTTTGGTTTCTTTCTTTACTTTTATGACTCTGTACTTTTTCC  500

seq1  TCCAAACATTACTATTTCTACTGGTATTCTAGTTCATACTAAGTCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATTACTATTTCTACTGGTATTCTAGTTCATACTAAGTCATGAA  550

seq1  ACTGTGAATACTGTCTTAACTGTAACAGGAGACTTCCAGACAAGGAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAATACTGTCTTAACTGTAACAGGAGACTTCCAGACAAGGAGAAC  600

seq1  CATCATTAGTGTTCCCTTTAAAAACCTCTACACGACAATGCATTCTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAGTGTTCCCTTTAAAAACCTCTACACGACAATGCATTCTGTTA  650

seq1  ATACCTGACCTACCCTGCTGAAAGTCAGTATCTGCCTCTATCACTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGACCTACCCTGCTGAAAGTCAGTATCTGCCTCTATCACTATATT  700

seq1  TCTCATACCTCTTTAGTGTTTGATATCTGTCTCTCCTGGTCTATTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACCTCTTTAGTGTTTGATATCTGTCTCTCCTGGTCTATTCTTTT  750

seq1  AAATTTATATATTTACTTATTCACCTTACATCCCAATATCAGCCCCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATATATTTACTTATTCACCTTACATCCCAATATCAGCCCCCTCT  800

seq1  TCCCAGTACCCAGAACCTCCCCCTACTCCCCCTTCCTCTTCTCCTCTGAG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCCAGTACCCAGAACCTCCCCCTACT-CCCCTTCCTCTTCTCCTCTGAG  849

seq1  AAGGGATAGCTTTCCTGGGTTCGCCCCCTGGCCCCCATCCCTAACCCCTG  900
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  AAGGGATAGCTTTCCTGGGTTCGCCCCCTGG-CCCCATCCCTAA-CCCTG  897

seq1  TCAAATCACTGCAGGACAAGGCACATCCTCTCACTGAGGTCAGACAATTT  950
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TC-AATCACTGCAGGACAAGGCACATCCTCTCACTGAGGTCAGAC-ATTT  945

seq1  TAAAAATTAATAAAAACAATCAAAGCCAGAGAACACTAGAAAAAGCGATG  1000
      |||||  | |||||||||||||||||||||| |||||||  |||||||||
seq2  TAAAA--TTATAAAAACAATCAAAGCCAGAG-ACACTAG--AAAGCGATG  990

seq1  TAGCGATCCCATCCTGGGAACCTGCAAGAAATCCCAAAGCAAAATTAAAT  1050
      |||||||||||||||||||| |||| ||||   |||||||||   | |||
seq2  TAGCGATCCCATCCTGGGAA-CTGC-AGAA--TCCAAAGCAA---TTAAT  1033

seq1  CCTAAAGCCG  1060
      ||||||||||
seq2  CCTAAAGCCG  1043