BAC Information

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BAC

Clone NameB6Ng01-035E13
Chromosome8 (Build37)18 (Build37)
Map Location 46,391,246 - 46,392,19023,397,359 - 23,398,068
singlet/doubletsingletsinglet
Overlap geneKlkb1, Cyp4v3
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11
Downstream geneBC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035E13.bB6Ng01-035E13.g
ACCDH863791DH863792
length925674
definitionDH863791|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E13, 5' end.DH863792|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,391,246 - 46,392,190)(23,397,359 - 23,398,068)
sequence
gaattcagttgacagcttggggagaatactccatggggctgggttaatta
gatgtctcgggctgaaccaagtgcgatcatacagtgtaactaaatataga
aggaaagattctttctactaaaagtagaggaattacaagaaagacatggc
cacatcaaggacataaatcctgagttctaactcatccaatcacggtcttg
acttccacaacaccaaaatatattgtgggagagagtaaatcagaatggaa
gtggagaggcctcagtgtagacattttagctacttttagccatggcagaa
atttgatgtctcctctactccatacccctattcttaatagaatggcacat
aaccaggaagtttctgtggccacttgaacttcaaaagccactaactaagc
ttctgtgagaggttagatgtgctggagagggatatcttccagtaataaga
tgtctaacgttattgtgtcgactgagaacagaaagaagattctagcacac
agtccacgaggtgactgtaccttgacaggggcatgcaaggggcctgcttt
tcattataaatctgaaagtgttttaacaactactcccatcataactgata
tctctgatgacatcataaaaacttaagcccattatcctgaagggcttagt
gacccaaccttttcaatgatatagaatttccaagtcaatggaaacatttt
cttaattctgaaatttcatttaaatgatgatcttggggcaggccgaaggt
cccctctgtataatttttctgcaggttatgtcagggtgctccactagcta
actgggccccgaagagaggaccaagtgtgatgtgcacccatgtggtaaga
acacaccaaaatttccgtggaagctgtgccaagatttgggtgcaggatgg
ggggacaaaaaggaaaacctaggtt
gaattcacgcagttgaatccttctcaacagtctgttttacgggaaccttt
atgaccgtgacccgcagttctggttccggaatgagggatcttccttgcgc
cggtgatggtaaccgtctcgggttttcttgtcccgggttttctcgtccca
ggtcttctcgtctcgggtctcagcaccaactcttacccgcgttcacgcga
ccggccaggaagaacgcagcaaaccggaatcttctgcggcaaaactttat
tgcttacatcttcaggagcaagaagcaagagccagagcaagagagcaaga
gctctattgcttacatctttaggagccagagcgcaagagcgcaagagtgc
aagagcaagagcaagagctctattgcttacatctttaggagccagagcgc
aagagagcaagagccagagcaagagtgcaagagctttattgcttacattc
aggagcaagaagcaagagagcaagagcttctattgcttacatctttagga
gcaagaaagcaagagccagagcaagagttgcaagagtgcaagtgctttta
ttgcttacatctttaggaagccagagcgcaagagaaccagagagagaatg
ggcgaaaccccgtccctttttaaggagaattattctccgcctaggacgta
tactcccctgattggctgcagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46391246_46392190
seq2: B6Ng01-035E13.b_47_971

seq1  GAATTCAGTTGACAGCTTGGGGAGAATACTCCATGGGGCTGGGTTAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGACAGCTTGGGGAGAATACTCCATGGGGCTGGGTTAATTA  50

seq1  GATGTCTCGGGCTGAACCAAGTGCGATCATACAGTGTAACTAAATATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCGGGCTGAACCAAGTGCGATCATACAGTGTAACTAAATATAGA  100

seq1  AGGAAAGATTCTTTCTACTAAAAGTAGAGGAATTACAAGAAAGACATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATTCTTTCTACTAAAAGTAGAGGAATTACAAGAAAGACATGGC  150

seq1  CACATCAAGGACATAAATCCTGAGTTCTAACTCATCCAATCACGGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAAGGACATAAATCCTGAGTTCTAACTCATCCAATCACGGTCTTG  200

seq1  ACTTCCACAACACCAAAATATATTGTGGGAGAGAGTAAATCAGAATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACAACACCAAAATATATTGTGGGAGAGAGTAAATCAGAATGGAA  250

seq1  GTGGAGAGGCCTCAGTGTAGACATTTTAGCTACTTTTAGCCATGGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGGCCTCAGTGTAGACATTTTAGCTACTTTTAGCCATGGCAGAA  300

seq1  ATTTGATGTCTCCTCTACTCCATACCCCTATTCTTAATAGAATGGCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTCTCCTCTACTCCATACCCCTATTCTTAATAGAATGGCACAT  350

seq1  AACCAGGAAGTTTCTGTGGCCACTTGAACTTCAAAAGCCACTAACTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAAGTTTCTGTGGCCACTTGAACTTCAAAAGCCACTAACTAAGC  400

seq1  TTCTGTGAGAGGTTAGATGTGCTGGAGAGGGATATCTTCCAGTAATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAGGTTAGATGTGCTGGAGAGGGATATCTTCCAGTAATAAGA  450

seq1  TGTCTAACGTTATTGTGTCGACTGAGAACAGAAAGAAGATTCTAGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACGTTATTGTGTCGACTGAGAACAGAAAGAAGATTCTAGCACAC  500

seq1  AGTCCACGAGGTGACTGTACCTTGACAGGGGCATGCAAGGGGCCTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACGAGGTGACTGTACCTTGACAGGGGCATGCAAGGGGCCTGCTTT  550

seq1  TCATTATAAAATCTGAAAGTGTTTTAACAACTACTCCCATCATAACTGAT  600
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAT-AAATCTGAAAGTGTTTTAACAACTACTCCCATCATAACTGAT  599

seq1  ATCTCTGATGACATCATAAAAACTTAAGCCCATTATCCTG-AGGGCTTAG  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTCTGATGACATCATAAAAACTTAAGCCCATTATCCTGAAGGGCTTAG  649

seq1  TGACCCAACATTTTCAAATGATATATGAATTTCCAAGTCAATGAGAACAT  699
      ||||||||| ||||| ||||||||| |||||||||||||||||  |||||
seq2  TGACCCAACCTTTTC-AATGATATA-GAATTTCCAAGTCAATGGAAACAT  697

seq1  TTTCTTAATTCTGAGATTTCATTTAAATGATGATCTTTGGGCAGGCCGAT  749
      |||||||||||||| |||||||||||||||||||||| ||||||||||| 
seq2  TTTCTTAATTCTGAAATTTCATTTAAATGATGATCTTGGGGCAGGCCGAA  747

seq1  GGT-CCCTCTGTTATAATTTTTCCTGCATGTTTATGTCAGTGCTGCTCCA  798
      ||| ||||||| |||||||||| ||||| | ||||||||| | |||||||
seq2  GGTCCCCTCTG-TATAATTTTT-CTGCA-GGTTATGTCAG-GGTGCTCCA  793

seq1  GCTAGCTAACTGTGCCCTCGAGAGAGAGACCAAGTGTGATGTGGCACCCA  848
       ||||||||||| ||||   |||||| ||||||||||||||| |||||||
seq2  -CTAGCTAACTGGGCCCCGAAGAGAG-GACCAAGTGTGATGT-GCACCCA  840

seq1  TGTTGGTAAGAAACACACCAAAATTCTCAGTGATAGACTGTGTCCCAAGA  898
      || ||||||| |||||||||||||| || |||  || |||||  ||||||
seq2  TG-TGGTAAG-AACACACCAAAATT-TCCGTGGAAG-CTGTG--CCAAGA  884

seq1  TCTGGGGTGCAGGAGTGGGGGGGACAAGAAAGGAAAAACACTAGGTT  945
      | | ||||||||||   |||||||||| |||||||||   |||||||
seq2  T-TTGGGTGCAGGA--TGGGGGGACAA-AAAGGAAAA--CCTAGGTT  925

seq1: chr18_23397359_23398068
seq2: B6Ng01-035E13.g_66_739 (reverse)

seq1  GGGCTGCAGCCAATCA-GGGAGTAATACATCCTAGGCGGAGGATAATTCT  49
      |||||||||||||||| |||||| |||| |||||||||||| ||||||||
seq2  GGGCTGCAGCCAATCAGGGGAGT-ATACGTCCTAGGCGGAGAATAATTCT  49

seq1  CCTT-AAAAGGGACGGGGTTTTG-CCATTCTTTTTCT--CTCTCTTGCTT  95
      |||| |||||||||||||||| | ||||||| | |||   ||||||||  
seq2  CCTTAAAAAGGGACGGGGTTTCGCCCATTCTCTCTCTGGTTCTCTTGCGC  99

seq1  TCTTG-TTCTT---GTTCT----------TTCTCTTGCTTTCTTG---TT  128
      ||| | ||| |   | | |            | |||||  |||||    |
seq2  TCTGGCTTCCTAAAGATGTAAGCAATAAAAGCACTTGCACTCTTGCAACT  149

seq1  CTTTTTCTTGCTCTTGCTTTCTTGTTCTT-------------------GT  159
      |||  ||| ||||||||||||||| || |                   | 
seq2  CTTGCTCTGGCTCTTGCTTTCTTGCTCCTAAAGATGTAAGCAATAGAAGC  199

seq1  TCTT--TTTCTTGC-TCTTGCT--TTCTTGT------------TCTTG--  190
      ||||  | |||||| |||||||  |   |||            |||||  
seq2  TCTTGCTCTCTTGCTTCTTGCTCCTGAATGTAAGCAATAAAGCTCTTGCA  249

seq1  TTCTTTTTCTTGTTCTTGCTTTCTTGCTCTCTTGCTCTT-----------  229
       ||||  ||| | ||||||| |||||| |||| |||| |           
seq2  CTCTTGCTCTGGCTCTTGCTCTCTTGCGCTCTGGCTCCTAAAGATGTAAG  299

seq1  -------GCTCTTGCTTTTGCTCTTGCACTCTTGCGCTCTTGCGATCTTG  272
             ||||||||| ||||||||||||||||||||||||||       
seq2  CAATAGAGCTCTTGCTCTTGCTCTTGCACTCTTGCGCTCTTGC-------  342

seq1  TGCTCTGGCTCCTAAAGATGTAAGCAATAGAG--------CTCTTGCTCT  314
       |||||||||||||||||||||||||||||||        ||||||||||
seq2  -GCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTGCTCTCTTGCTCT  391

seq1  GGCTCTTGCTTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAG  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGCTTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAG  441

seq1  AAGATTCTGGTTTGTTGTGTTCTTCCTGGCCGGTAGCGTGAACGCGTGTA  414
      ||||||| |||||| || |||||||||||||||| ||||||||||| |||
seq2  AAGATTCCGGTTTGCTGCGTTCTTCCTGGCCGGTCGCGTGAACGCGGGTA  491

seq1  AGAGTTGGTGCTGAGACCCGGGATGGGACGAGAAAACCTGGGACGAGAAA  464
      |||||||||||||||||||     | |||||||| |||||||||||||||
seq2  AGAGTTGGTGCTGAGACCC-----GAGACGAGAAGACCTGGGACGAGAAA  536

seq1  ACCCGGGACGAGAAGACCTGGAACGAGAAATCCTGGGACGAGAAAACCCA  514
      ||||                              ||||| ||||||||| 
seq2  ACCC------------------------------GGGACAAGAAAACCCG  556

seq1  GGACGGTTACCATCACCTGCGCAAGGAAGATCCCTCATTCTGGAACCAGA  564
       |||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AGACGGTTACCATCACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGA  606

seq1  ACTGCAGGTCATGGTAATAAAGGTTCCCGTAAAACAGACTGTTGAGAAGG  614
      ||||| ||||| ||| ||||||||||||||||||||||||||||||||||
seq2  ACTGCGGGTCACGGTCATAAAGGTTCCCGTAAAACAGACTGTTGAGAAGG  656

seq1  AT---CCGGCCTGGATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGA  661
      ||    | || || ||||                                
seq2  ATTCAACTGCGTGAATTC--------------------------------  674

seq1  AGTGTTCCCATAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  710
                                                       
seq2  -------------------------------------------------  674