BAC Information

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BAC

Clone NameB6Ng01-043F09
Chromosome18 (Build37)
Map Location 18,859,077 - 18,984,679
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043F09.bB6Ng01-043F09.g
ACCDH869430DH869431
length1,0691,093
definitionDH869430|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F09, 5' end.DH869431|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,983,597 - 18,984,679)(18,859,077 - 18,860,171)
sequence
gaattccatatattcattacaattttcaccttgataaattcttggataat
gtgacattacaagcccttatttttttatttacattttgtgtttgctacta
ctatgctgaaatacctaaacataaatacagatgtacagtgtatataagta
catgtatgcatatgaatacctttttatgttccatatatttatattatttc
tcatagaataacttgttttgagcaaaactaaggtaaagaactatttgact
ttcctttcatttccaaatgttggacatggaatatagaacaagtgattgtt
ttgttggtggacagttccaggatcaatgtgttgaacctctcctgtttgca
aatagatgttccaattcagaatcttccatacatttttacatttcccttat
attttaaattcatatgattctatttggtctacttcaattttgaaatatga
ttgctttttactcttccttgggttccagtctcaataaagatatttgttag
ctttctcttatttattcatcacccgtcatactccagtgaggaaagtgatg
tgaaatgagaaacataaatacattagcggcaagtttcagacattttcctg
ttcaaaatttctcaattctgtggttttccctcagtgaagtcttttcttga
aacatgcttgaaggaacatatttgtattccatacattcggtaattttata
cacatgtggtattatccatttatttcaggttctctccctactttttacat
cattttatttagttttcttagattgtaatctaattatgacatccctctcc
ccttttttctccctacattccctcactcatgtgtaggttttgttgttgtt
gttcttgttgtttgttttttgtttgttgtttttgtttttgttttttggta
atggtgtttttttcgagacagggttctctttttcttaatagctctggctg
cctggagctcactttgtgatcaggctggcctcaactaaaatccggctgcc
ctgcctccaagtctgggatataaggcttgcgcatcccctcccggtccatg
ataaatttaatctctttaa
gaattcactttgtagaccaggctggcctcgaactcagaaatccaccctgc
ctctgtctctcaagtgctgggattaaaggtgtgcaacaccactgccaggc
tctgatttcagaatcttaaaatgactgttgggacattagatattttttgt
ttaagcagcaagaaagatgcagctaaaaaaaaataataaggtcatttgga
ggaaggtcttaatgtaagatgaagagtttgaattgtatcctgtagatgat
aaaggaccgttgaatgcttttaagtgggaatgtaacagtaaatgtgggaa
gataagagccagttcatttattcatttcatgagcatttattaagcatgta
ttaggttgtaggaattgttataagataaagatggtgataccttgttgctt
ggaagtggagactaaagaacagtatcttagcagtatctgtcagctatgtg
ggaaggcagctctatgaccttacatatattactgaatgaataactctaga
tcacagcttcctgatctataaaatgggaataatatatacagtggcaactt
ctatgagagataagaatgtatggaatatacttggctcatattaaacactt
aaaatgggaataatatatacagtggcaacttctatgagagataagaatgt
atggaatatacttggctcatattaaacacttatttatggttggttttgaa
gatattaaatatttggtttaatgttcttgttcaataataaaattaaaatc
taactttgtacatttaaaaaaaagatttttcttttagtacctccttcagg
acttaatttgtagatagggtatttattctttactgaatgaataactctag
aacacagcttctagaacacatttgggtttaacatgggatattttgttttc
tccatcttagttgactgaaatttttgctgggtagaatactatgggctagc
acctgtgttcttttagattctgcaggaatatcattctagattttcctggc
atggtaaaatctttgttaagaagttaggtttaattctatagggtggcatt
atatatacttagcaattttcccttacagatggaaattctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18983597_18984679
seq2: B6Ng01-043F09.b_46_1114 (reverse)

seq1  TTAAAGAGATTAAAATTTATACATGAGCCGGGCGTGGTGGCGCACGCCTT  50
      ||||||||||| |||||||| ||||  ||||| | ||  ||||| |||||
seq2  TTAAAGAGATT-AAATTTAT-CATGGACCGGGAGGGGATGCGCAAGCCTT  48

seq1  TAATCCCAGAACTTGGGAGGCAGAGGCAGGCGGATATCTGAGTTCGAGGC  100
        ||||||| |||| |||||||| ||||| |||  || | |||| |||||
seq2  ATATCCCAG-ACTT-GGAGGCAG-GGCAGCCGG--ATTTTAGTT-GAGGC  92

seq1  CAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGAGCTATAAAGAAAA  150
      ||||||| || ||||||||||||||||| ||||||||||||| |||||||
seq2  CAGCCTGATC-ACAAAGTGAGCTCCAGG-CAGCCAGAGCTATTAAGAAAA  140

seq1  AGAGAAACCCTGTCTCGAAAAACAACAACAATAACAAAAAAACAAAAACA  200
      |||| ||||||||||||||||| ||| || || || ||||||||||||| 
seq2  AGAG-AACCCTGTCTCGAAAAA-AAC-ACCATTACCAAAAAACAAAAAC-  186

seq1  AAAAACAACAAACAAAAAACAAACAACAAGAACAACAACAACAAAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACAAACAAAAAACAAACAACAAGAACAACAACAACAAAACCTA  236

seq1  CACATGAGTGAGGGAATGTAGGGAGAAAAAAGGGGAGAGGGATGTCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGTGAGGGAATGTAGGGAGAAAAAAGGGGAGAGGGATGTCATAA  286

seq1  TTAGATTACAATCTAAGAAAACTAAATAAAATGATGTAAAAAGTAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTACAATCTAAGAAAACTAAATAAAATGATGTAAAAAGTAGGGAG  336

seq1  AGAACCTGAAATAAATGGATAATACCACATGTGTATAAAATTACCGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGAAATAAATGGATAATACCACATGTGTATAAAATTACCGAATG  386

seq1  TATGGAATACAAATATGTTCCTTCAAGCATGTTTCAAGAAAAGACTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATACAAATATGTTCCTTCAAGCATGTTTCAAGAAAAGACTTCAC  436

seq1  TGAGGGAAAACCACAGAATTGAGAAATTTTGAACAGGAAAATGTCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAAACCACAGAATTGAGAAATTTTGAACAGGAAAATGTCTGAAA  486

seq1  CTTGCCGCTAATGTATTTATGTTTCTCATTTCACATCACTTTCCTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCGCTAATGTATTTATGTTTCTCATTTCACATCACTTTCCTCACTG  536

seq1  GAGTATGACGGGTGATGAATAAATAAGAGAAAGCTAACAAATATCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGACGGGTGATGAATAAATAAGAGAAAGCTAACAAATATCTTTAT  586

seq1  TGAGACTGGAACCCAAGGAAGAGTAAAAAGCAATCATATTTCAAAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGGAACCCAAGGAAGAGTAAAAAGCAATCATATTTCAAAATTGA  636

seq1  AGTAGACCAAATAGAATCATATGAATTTAAAATATAAGGGAAATGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCAAATAGAATCATATGAATTTAAAATATAAGGGAAATGTAAAA  686

seq1  ATGTATGGAAGATTCTGAATTGGAACATCTATTTGCAAACAGGAGAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGAAGATTCTGAATTGGAACATCTATTTGCAAACAGGAGAGGTT  736

seq1  CAACACATTGATCCTGGAACTGTCCACCAACAAAACAATCACTTGTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATTGATCCTGGAACTGTCCACCAACAAAACAATCACTTGTTCTA  786

seq1  TATTCCATGTCCAACATTTGGAAATGAAAGGAAAGTCAAATAGTTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATGTCCAACATTTGGAAATGAAAGGAAAGTCAAATAGTTCTTTA  836

seq1  CCTTAGTTTTGCTCAAAACAAGTTATTCTATGAGAAATAATATAAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTTTGCTCAAAACAAGTTATTCTATGAGAAATAATATAAATATA  886

seq1  TGGAACATAAAAAGGTATTCATATGCATACATGTACTTATATACACTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATAAAAAGGTATTCATATGCATACATGTACTTATATACACTGTA  936

seq1  CATCTGTATTTATGTTTAGGTATTTCAGCATAGTAGTAGCAAACACAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTATTTATGTTTAGGTATTTCAGCATAGTAGTAGCAAACACAAAA  986

seq1  TGTAAATAAAAAAATAAGGGCTTGTAATGTCACATTATCCAAGAATTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAAAAAAATAAGGGCTTGTAATGTCACATTATCCAAGAATTTAT  1036

seq1  CAAGGTGAAAATTGTAATGAATATATGGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  CAAGGTGAAAATTGTAATGAATATATGGAATTC  1069

seq1: chr18_18859077_18860171
seq2: B6Ng01-043F09.g_68_1160

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCCTGC  50

seq1  CTCTGTCTCTCAAGTGCTGGGATTAAAGGTGTGCAACACCACTGCCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCAAGTGCTGGGATTAAAGGTGTGCAACACCACTGCCAGGC  100

seq1  TCTGATTTCAGAATCTTAAAATGACTGTTGGGACATTAGATATTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCAGAATCTTAAAATGACTGTTGGGACATTAGATATTTTTTGT  150

seq1  TTAAGCAGCAAGAAAGATGCAGCTAAAAAAAAATAATAAGGTCATTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGCAAGAAAGATGCAGCTAAAAAAAAATAATAAGGTCATTTGGA  200

seq1  GGAAGGTCTTAATGTAAGATGAAGAGTTTGAATTGTATCCTGTAGATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCTTAATGTAAGATGAAGAGTTTGAATTGTATCCTGTAGATGAT  250

seq1  AAAGGACCGTTGAATGCTTTTAAGTGGGAATGTAACAGTAAATGTGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACCGTTGAATGCTTTTAAGTGGGAATGTAACAGTAAATGTGGGAA  300

seq1  GATAAGAGCCAGTTCATTTATTCATTTCATGAGCATTTATTAAGCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGCCAGTTCATTTATTCATTTCATGAGCATTTATTAAGCATGTA  350

seq1  TTAGGTTGTAGGAATTGTTATAAGATAAAGATGGTGATACCTTGTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGTAGGAATTGTTATAAGATAAAGATGGTGATACCTTGTTGCTT  400

seq1  GGAAGTGGAGACTAAAGAACAGTATCTTAGCAGTATCTGTCAGCTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGAGACTAAAGAACAGTATCTTAGCAGTATCTGTCAGCTATGTG  450

seq1  GGAAGGCAGCTCTATGACCTTACATATATTACTGAATGAATAACTCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGCTCTATGACCTTACATATATTACTGAATGAATAACTCTAGA  500

seq1  TCACAGCTTCCTGATCTATAAAATGGGAATAATATATACAGTGGCAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTTCCTGATCTATAAAATGGGAATAATATATACAGTGGCAACTT  550

seq1  CTATGAGAGATAAGAATGTATGGAATATACTTGGCTCATATTAAACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAGATAAGAATGTATGGAATATACTTGGCTCATATTAAACACTT  600

seq1  AAAATGGGAATAATATATACAGTGGCAACTTCTATGAGAGATAAGAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAATAATATATACAGTGGCAACTTCTATGAGAGATAAGAATGT  650

seq1  ATGGAATATACTTGGCTCATATTAAACACTTATTTATGGTTGGTTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATACTTGGCTCATATTAAACACTTATTTATGGTTGGTTTTGAA  700

seq1  GATATTAAATATTTGGTTTAATGTTCTTGTTCAATAATAAAATTAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAATATTTGGTTTAATGTTCTTGTTCAATAATAAAATTAAAATC  750

seq1  TAACTTTGTACATTTAAAAAAAAGAATTTTTCTTTTAGTACCTCCTTCAG  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAACTTTGTACATTTAAAAAAAAG-ATTTTTCTTTTAGTACCTCCTTCAG  799

seq1  GACTTAATTTGTAGATA-GGTATTTATTCTTTACTGAATGAATAACTCTA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACTTAATTTGTAGATAGGGTATTTATTCTTTACTGAATGAATAACTCTA  849

seq1  GAACACAGCTTCTAGAACACATTTGGCTTTAACATGGGATATTTTGTTTT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAACACAGCTTCTAGAACACATTTGGGTTTAACATGGGATATTTTGTTTT  899

seq1  CTCCATCTTAGTTGACTGAAATTTTTGCTGGGTAGAATACTATGGGCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTAGTTGACTGAAATTTTTGCTGGGTAGAATACTATGGGCTAG  949

seq1  CACCTGTGTTCTTTTAGAATCTGCAGG-ATATCATTCTAGATTTTCCTGG  998
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CACCTGTGTTCTTTTAGATTCTGCAGGAATATCATTCTAGATTTTCCTGG  999

seq1  CAT-GTAGAATCTTTGTTAAGAAGTTAGGTTTAATTCTAATAGGTTTGCA  1047
      ||| ||| |||||||||||||||||||||||||||||| ||||| | |||
seq2  CATGGTAAAATCTTTGTTAAGAAGTTAGGTTTAATTCT-ATAGGGTGGCA  1048

seq1  TTTATATATTACTTAGTCATTTTCCCTTTCAGGTTTGATATTCTTTGT  1095
       ||||||| |||||||  |||||||||| || | | || |||||||||
seq2  -TTATATA-TACTTAGCAATTTTCCCTTACA-GATGGAAATTCTTTGT  1093