BAC Information

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BAC

Clone NameB6Ng01-044M03
Chromosome18 (Build37)
Map Location 82,662,848 - 82,795,848
singlet/doubletdoublet
Overlap geneMbp, EG637748, Zfp236
Upstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1
Downstream geneLOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M03.bB6Ng01-044M03.g
ACCDH870422DH870423
length1,0521,077
definitionDH870422|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M03, 5' end.DH870423|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,662,848 - 82,663,901)(82,794,774 - 82,795,848)
sequence
gaattcaaatcgtccagcttggtggccagtgccatttatccactgagcta
tcttgatggcctcaggatctcttctgtgaaaacactcacaaaatcagctt
tcttgggactcctaagagtgctattttatatcacatgtggggaaactcct
ttctgtagagctggactgaaaatctgtgtgcattgcaactccacagcttg
accacagcagggagtgtgtggaaatcaagcaaggcagatccagacatttc
agatgcgtgagtcatgatttgttgaccctttatctgcatgaagaaagtct
gattcctcaggaatttagcttaaatgagattaaaaaaaaaaaaaaaagat
ctgatgaattagaaccgccacccatcttcttttatacacccttgccacta
caccggcagtgatgcacaaacccctcaaaagtcacttccaagttttgagc
ctgacataagtagaaagaccatcgctccctcactctcctgagcatcactt
cctgagccatgcactgggaaggggctggcagggctactgctgtaaagttt
ctcagtttcaaaggtttacggaaacgtgagggataaagcatactgtggca
aaaaataatccccgtagctccatggaaacgcctattttaggaccgcttcc
ttgaacatgaactcaggaaaaaaaagaaaaacacattttgcaatcaacag
cgtgtcatttaatgagagagagagagagagagagagagagagccaaaagc
acttgaaatctgtgaaatagtacagctgccatttatgtccagtgacgcac
aagacacctatctccttcggcatgtgcaagtacaccctacacatgctaaa
gccacgagccctgattagcagcggacacagcagtacacatgagcagctcc
tggccattgtgtacttgatatctggacagcaactgtggtcactctttcac
ctgagcggcttctgggaggaggggaagtggcatggatgccagtctgctat
aagtatgcctcagtgaggttcccatagagtccactttgccgctatgatgt
gt
gaattccctgttttccttccagttgtttatcctgtcacttacttgcagtt
atctacggatgaggttacaggtcaggctgtaggaccactctggtgctaca
ttcaaatgacagtagtgtacatttgtcttatagttggaaagggagccttc
accgtttgcctgaaccactttaaaattgcaaaagccttgacttgggtgtg
gcagagctgctgtggtcggcttctttagtagagagttctgagacctctgg
ccttctgagcttcaaagagtagatccatctggcagagtttagtgtggccc
tggtttccagcagtcacggtctgcagtgagctgtggtgagccatgaaaag
caagtctttcagatgcccagatggtactcctcagaccctggagtgtgcgc
agtgtccactggtgagctagcatgaatatgctccaggccagtgctaggct
ttcttagcagttaagaaggcatagattccagagtcgatgccaggattgct
tcgtggggttcccatagctctttgtcacactgcattcatgtttatggaca
ctgtgatgatgatgatgcctgccgtgcacactctgagccagagaagaagt
catgcattgttcgctctgctcgccctggtgcttgggatgtggatttagtt
ccttctcggctgccacggttggctacggccttacatgagccgtctgctat
tcttgctaattttattatcttttcctttttcacgcctagttttatattga
tctttatatattttggttatttaaaatttcagcacagttatctccatgtt
ttaccatggagtgttggtgggggctctgtctatagcttgcttagatcgtt
cagaccttacaaatgaatgatggagttcttatgtgtatgttttttctaga
agttttgtgatagatatttgagtttcctgacttttgtctttcgtggcaga
tctcctttcccaccccttctcctgttttctgtctgggtcatcctttttct
gaatatcaatccaagtgtttttgcaatttttgaatggaattatttctcct
actctccctacgtctgtaggggttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_82662848_82663901
seq2: B6Ng01-044M03.b_41_1092

seq1  GAATTCAAATCGTCCAGCTTGGTGGCCAGTGCCATTTATCCACTGAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCGTCCAGCTTGGTGGCCAGTGCCATTTATCCACTGAGCTA  50

seq1  TCTTGATGGCCTCAGGATCTCTTCTGTGAAAACACTCACAAAATCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGGCCTCAGGATCTCTTCTGTGAAAACACTCACAAAATCAGCTT  100

seq1  TCTTGGGACTCCTAAGAGTGCTATTTTATATCACATGTGGGGAAACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGACTCCTAAGAGTGCTATTTTATATCACATGTGGGGAAACTCCT  150

seq1  TTCTGTAGAGCTGGACTGAAAATCTGTGTGCATTGCAACTCCACAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGAGCTGGACTGAAAATCTGTGTGCATTGCAACTCCACAGCTTG  200

seq1  ACCACAGCAGGGAGTGTGTGGAAATCAAGCAAGGCAGATCCAGACATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCAGGGAGTGTGTGGAAATCAAGCAAGGCAGATCCAGACATTTC  250

seq1  AGATGCGTGAGTCATGATTTGTTGACCCTTTATCTGCATGAAGAAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGTGAGTCATGATTTGTTGACCCTTTATCTGCATGAAGAAAGTCT  300

seq1  GATTCCTCAGGAATTTAGCTTAAATGAGATTAAAAAAAAAAAAAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCAGGAATTTAGCTTAAATGAGATTAAAAAAAAAAAAAAAAGAT  350

seq1  CTGATGAATTAGAACCGCCACCCATCTTCTTTTATACACCCTTGCCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATTAGAACCGCCACCCATCTTCTTTTATACACCCTTGCCACTA  400

seq1  CACCGGCAGTGATGCACAAACCCCTCAAAAGTCACTTCCAAGTTTTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCAGTGATGCACAAACCCCTCAAAAGTCACTTCCAAGTTTTGAGC  450

seq1  CTGACATAAGTAGAAAGACCATCGCTCCCTCACTCTCCTGAGCATCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATAAGTAGAAAGACCATCGCTCCCTCACTCTCCTGAGCATCACTT  500

seq1  CCTGAGCCATGCACTGGGAAGGGGCTGGCAGGGCTACTGCTGTAAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCATGCACTGGGAAGGGGCTGGCAGGGCTACTGCTGTAAAGTTT  550

seq1  CTCAGTTTCAAAGGTTTACGGAAACGTGAGGGATAAAGCATACTGTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCAAAGGTTTACGGAAACGTGAGGGATAAAGCATACTGTGGCA  600

seq1  AAAAATAATCCCCGTAGCTCCATGGAAACGCCTATTTTAGGACCGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCCCCGTAGCTCCATGGAAACGCCTATTTTAGGACCGCTTCC  650

seq1  TTGAACATGAACTCAGGAAAAAAAAGAAAAACACATTTTGCAATCAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATGAACTCAGGAAAAAAAAGAAAAACACATTTTGCAATCAACAG  700

seq1  CGTGTCATTTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCAAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCATTTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCAAAAGC  750

seq1  ACTTGAAATCTGTGAAATAGTACAGCTGCCATTTATGTCCAGTGACGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAATCTGTGAAATAGTACAGCTGCCATTTATGTCCAGTGACGCAC  800

seq1  AAGACACCTATCTCCTTCGGCATGTGCAAGTACACCCTACACATGCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCTATCTCCTTCGGCATGTGCAAGTACACCCTACACATGCTAAA  850

seq1  GCCACGAGCCCTGATTAGCAGCGGACACAGCAGTACACATGAGCAGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGAGCCCTGATTAGCAGCGGACACAGCAGTACACATGAGCAGCTCC  900

seq1  TGGCCATTGTGTACTTGATATCTGGACAGCAACTGTGGTCACTCTTTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTGTGTACTTGATATCTGGACAGCAACTGTGGTCACTCTTTCAC  950

seq1  CTGAGCGGCTTCTGGGAGGAGGGGAAGGTGGCATGGATGCCAGTCTGCTA  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGAGCGGCTTCTGGGAGGAGGGGAA-GTGGCATGGATGCCAGTCTGCTA  999

seq1  TAAGTATGCCTCAGTGAGGTTCCCATAGAGTCCACTTTGCCGCTATGATT  1050
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAGTATGCCTCAGTGAGGTTCCCATAGAGTCCACTTTGCCGCTATGA-T  1048

seq1  GTGT  1054
      ||||
seq2  GTGT  1052

seq1: chr18_82794774_82795848
seq2: B6Ng01-044M03.g_66_1142 (reverse)

seq1  GGTAAACCCTACAGACGTAGGGA-AGTGAGCAGAATTAACTCCAATCAGA  49
      ||||| ||||||||||||||||| ||| || |||| ||| |||| ||| |
seq2  GGTAACCCCTACAGACGTAGGGAGAGT-AGGAGAAATAATTCCATTCA-A  48

seq1  AAATGGAAAAAACAACTGGATTGATATTCAGAAAAAAGATGGACCAGACA  99
      |||| | |||||||  |||||||||||||||||||| ||||  |||||||
seq2  AAATTGCAAAAACACTTGGATTGATATTCAGAAAAAGGATGACCCAGACA  98

seq1  GAAAACAGGAG-AGGGGTGGGAAAGGAGATCTGCCACGAAAGAC-AGAGT  147
      ||||||||||| |||||||||||||||||||||||||||||||| | |||
seq2  GAAAACAGGAGAAGGGGTGGGAAAGGAGATCTGCCACGAAAGACAAAAGT  148

seq1  CAGGAAACTC-AATATCTACTCACAAAACTTCTAG-AAAAACATACACAT  195
      |||||||||| |||||||| ||||||||||||||| ||||||||||||||
seq2  CAGGAAACTCAAATATCTA-TCACAAAACTTCTAGAAAAAACATACACAT  197

seq1  AAGAACTCCATCATACATTTGTAAGGTCTGAACGATCTAAGCAAGCTATA  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAACTCCATCATTCATTTGTAAGGTCTGAACGATCTAAGCAAGCTATA  247

seq1  GACAGAGCCCCCACCAACACTCCATGGTAAAACATGGAGATAACTGTGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCCCCCACCAACACTCCATGGTAAAACATGGAGATAACTGTGCT  297

seq1  GAAATTTTAAATAACCAAAATATATAAAGATCAATATAAAACTAGGCGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAAATAACCAAAATATATAAAGATCAATATAAAACTAGGCGTG  347

seq1  AAAAAGGAAAAGATAATAAAATTAGCAAGAATAGCAGACGGCTCATGTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAAGATAATAAAATTAGCAAGAATAGCAGACGGCTCATGTAA  397

seq1  GGCCGTAGCCAACCGTGGCAGCCGAGAAGGAACTAAATCCACATCCCAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTAGCCAACCGTGGCAGCCGAGAAGGAACTAAATCCACATCCCAAG  447

seq1  CACCAGGGCGAGCAGAGCGAACAATGCATGACTTCTTCTCTGGCTCAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGCGAGCAGAGCGAACAATGCATGACTTCTTCTCTGGCTCAGAG  497

seq1  TGTGCACGGCAGGCATCATCATCATCACAGTGTCCATAAACATGAATGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGGCAGGCATCATCATCATCACAGTGTCCATAAACATGAATGCA  547

seq1  GTGTGACAAAGAGCTATGGGAACCCCACGAAGCAATCCTGGCATCGACTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACAAAGAGCTATGGGAACCCCACGAAGCAATCCTGGCATCGACTC  597

seq1  TGGAATCTATGCCTTCTTAACTGCTAAGAAAGCCTAGCACTGGCCTGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTATGCCTTCTTAACTGCTAAGAAAGCCTAGCACTGGCCTGGAG  647

seq1  CATATTCATGCTAGCTCACCAGTGGACACTGCGCACACTCCAGGGTCTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATGCTAGCTCACCAGTGGACACTGCGCACACTCCAGGGTCTGA  697

seq1  GGAGTACCATCTGGGCATCTGAAAGACTTGCTTTTCATGGCTCACCACAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACCATCTGGGCATCTGAAAGACTTGCTTTTCATGGCTCACCACAG  747

seq1  CTCACTGCAGACCGTGACTGCTGGAAACCAGGGCCACACTAAACTCTGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCAGACCGTGACTGCTGGAAACCAGGGCCACACTAAACTCTGCC  797

seq1  AGATGGATCTACTCTTTGAAGCTCAGAAGGCCAGAGGTCTCAGAACTCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATCTACTCTTTGAAGCTCAGAAGGCCAGAGGTCTCAGAACTCTC  847

seq1  TACTAAAGAAGCCGACCACAGCAGCTCTGCCACACCCAAGTCAAGGCTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGAAGCCGACCACAGCAGCTCTGCCACACCCAAGTCAAGGCTTT  897

seq1  TGCAATTTTAAAGTGGTTCAGGCAAACGGTGAAGGCTCCCTTTCCAACTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTTAAAGTGGTTCAGGCAAACGGTGAAGGCTCCCTTTCCAACTA  947

seq1  TAAGACAAATGTACACTACTGTCATTTGAATGTAGCACCAGAGTGGTCCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAATGTACACTACTGTCATTTGAATGTAGCACCAGAGTGGTCCT  997

seq1  ACAGCCTGACCTGTAACCTCATCCGTAGATAACTGCAAGTAAGTGACAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGACCTGTAACCTCATCCGTAGATAACTGCAAGTAAGTGACAGG  1047

seq1  ATAAACAACTGGAAGGAAAACAGGGAATTC  1075
      ||||||||||||||||||||||||||||||
seq2  ATAAACAACTGGAAGGAAAACAGGGAATTC  1077