BAC Information

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BAC

Clone NameB6Ng01-044P10
Chromosome18 (Build37)
Map Location 4,613,638 - 4,614,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
Downstream geneLOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438, LOC100039442, Zeb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044P10.bB6Ng01-044P10.g
ACCDH870563DH870564
length7231,215
definitionDH870563|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P10, 5' end.DH870564|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctggtagaatttttggggttgcttatatatactattgtatcat
ttgcatacttagcttcttcctttccattttgtatccccttgatctttttt
agttgtctttgttctagctaaaacttcaagtattatattgaatagatgca
gagagagtggacagccttgacttgtccctgattttaggagaattgcttta
cgtttctctccatttaatctgatgttggccatcagcttactgtatattgc
ctttatcgtgtgtgcatatgtagtatatcacctttctcgtgtgtggatat
gtagtatattacctttatcgtgcgtgggtatgtactttgtatccctggtt
tctctaagacttttatcatgaaggggtgttggattttgtcaaaagctttt
tcagcatctaacgagatgaccatgtggtttatatggtggattacattgac
agattttcatgtggacacttgatatttttttttataaagaagccagaaat
atacaatgggggggggggaagcatgttcaacaaatggtgctggacaaact
ggatgtctgcatgtagaagaatgcaaatagatccacatctattaccttaa
gcaaaactcaagacacacctataatatcttgagcatatacccaaaggctc
tccctcatcccacaaggacacttgctcaagtttgttcatatcagctttta
tttgttatatcaaaaaactgaaa

gaattcaattgtacccctcaaggcttcaggtgttgacattcagtccccac
tgtgagcacatctcacgtatctcattgcagcaatggaaagctgactaaca
ggagcattgaataggatcctggttcctcctattaagaataacatagcggg
gttggggatttagctcagtggtagagtgcttgcctagcaagcgcaaggcc
ctgggttcggtcctcagctctggaaaaaaaagaaaaaaaaaaaaaagaat
aacatagagaagcaaagtcatgttccagattcttctccactccttgtatc
tttttgcaagagaggcagtggtgcctgatttacaagtctgagacaacgag
ctgagcatactcagccagcatcctcctcctcctcctccttctctttgaat
caacacacattcttgacaagttctctaagttatggagcattcgtttttgt
tgttggctaggaaagcctgtctattgagaagttggatggttaatattcat
tgccaaattgacagtatctagaattacccaggagagaggcctctaggcat
acctgtgagggattatctggattaagctatcccctgagagaatgtctagg
aagaattatcttcactatgttcaatgactaggaaaactatctcagctgta
ggcagggcagttcctggattatggaaagagagaaagtgagccacgcaccc
ccttgtttctgcttcttgaccgtgcgtgccatgtgaccagctccctcata
ctcactctgctgtgactccctgccacagcagtctgtaaccacaggctgca
cctttctccctgttatcagggtacttaacacaacaaagggaaaggaccta
acacaacaattaagtccactgttttgtttatttttggttttctgagacag
gttctcactatgtcacctctagctgacctgagattcactatgtactatat
aaactaggctggccttggagtcagagatcggccttcctctgccaccagag
tgctgggattaagatatgtggcaacctaaagatatatgcctgggctcaag
gccattggttgtttgtgttttttaagtaacttaatggcctctcaatttct
tcacttgatggctgaaaagtgtggtctaactaaaaacggggggttcgaaa
gccatagtggagctattggctattgtttcctgcggaacggtttcctattc
gaaaaaaacaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4613638_4614846
seq2: B6Ng01-044P10.g_67_1280 (reverse)

seq1  AAATTG--TTTTTCTGATAG--AACCGTTCCGCAG--AACAAT-GCCAAG  43
      ||||||  ||||||  ||||  |||||||||||||  |||||| ||||| 
seq2  AAATTGTTTTTTTCGAATAGGAAACCGTTCCGCAGGAAACAATAGCCAA-  49

seq1  TAG-TCAACTA-GGCTTTCCGACACCATGTTTCTAAGTCAGA-CACACTT  90
      ||| || |||| |||||||  || ||  |||| | ||| ||| ||||| |
seq2  TAGCTCCACTATGGCTTTCGAACCCCCCGTTT-TTAGTTAGACCACAC-T  97

seq1  TTTCAGCCATCAGTAGAAAGAAATGGAGAATGACATTTAAGTTTACTTTA  140
      ||||||||||||   | ||||||| ||||  | |  ||||| |||||| |
seq2  TTTCAGCCATCAAGTG-AAGAAATTGAGA--GGCCATTAAG-TTACTTAA  143

seq1  AAAACAACAACAACAATGGGCCTTGAG-CCAGGCATATATCTTT-GGGTG  188
      ||||||  |||||| |  ||||||||| |||||||||||||||| || ||
seq2  AAAACACAAACAACCAATGGCCTTGAGCCCAGGCATATATCTTTAGGTTG  193

seq1  GCACATATCTTAATCCCAGCACTCTGGTGGCAGAGGGAGGCCGATCTCTG  238
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCACATATCTTAATCCCAGCACTCTGGTGGCAGAGGAAGGCCGATCTCTG  243

seq1  ACTTCAAGGCCAGCCTAGTTTATATAGTTACATAGTGAATCTCAGGTCAG  288
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTCCAAGGCCAGCCTAGTTTATATAG-TACATAGTGAATCTCAGGTCAG  292

seq1  CTAGA-GTGACATAGTGAGACCCTGTCTCAGAAAAACAAAAATAAACAAA  337
      ||||| |||||||||||||| |||||||||||||| ||||||||||||||
seq2  CTAGAGGTGACATAGTGAGAACCTGTCTCAGAAAACCAAAAATAAACAAA  342

seq1  ACAGTGGACTTAATTGTTGTGTTAGGTCCTTTCCCTTTGTTGTGTTAAGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGACTTAATTGTTGTGTTAGGTCCTTTCCCTTTGTTGTGTTAAGT  392

seq1  ACCCTGATAACAGGGAGAAAGGTGCAGCCTGTGGTTACAGACTGCTGTGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGATAACAGGGAGAAAGGTGCAGCCTGTGGTTACAGACTGCTGTGG  442

seq1  CAGGGAGTCACAGCAGAGTGAGTATGAGGGAGCTGGTCACATGGCACGCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTCACAGCAGAGTGAGTATGAGGGAGCTGGTCACATGGCACGCA  492

seq1  CGGTCAAGAAGCAGAAACAAGGGGGTGCGTGGCTCACTTTCTCTCTTTCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAAGAAGCAGAAACAAGGGGGTGCGTGGCTCACTTTCTCTCTTTCC  542

seq1  ATAATCCAGGAACTGCCCTGCCTACAGCTGAGATAGTTTTCCTAGTCATT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAGGAACTGCCCTGCCTACAGCTGAGATAGTTTTCCTAGTCATT  592

seq1  GAACATAGTGAAGATAATTCTTCCTAGACATTCTCTCAGGGGATAGCTTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGAAGATAATTCTTCCTAGACATTCTCTCAGGGGATAGCTTA  642

seq1  ATCCAGATAATCCCTCACAGGTATGCCTAGAGGCCTCTCTCCTGGGTAAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATAATCCCTCACAGGTATGCCTAGAGGCCTCTCTCCTGGGTAAT  692

seq1  TCTAGATACTGTCAATTTGGCAATGAATATTAACCATCCAACTTCTCAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATACTGTCAATTTGGCAATGAATATTAACCATCCAACTTCTCAAT  742

seq1  AGACAGGCTTTCCTAGCCAACAACAAAAACGAATGCTCCATAACTTAGAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCTTTCCTAGCCAACAACAAAAACGAATGCTCCATAACTTAGAG  792

seq1  AACTTGTCAAGAATGTGTGTTGATTCAAAGAGAAGGAGGAGGAGGAGGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCAAGAATGTGTGTTGATTCAAAGAGAAGGAGGAGGAGGAGGAG  842

seq1  GATGCTGGCTGAGTATGCTCAGCTCGTTGTCTCAGACTTGTAAATCAGGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGCTGAGTATGCTCAGCTCGTTGTCTCAGACTTGTAAATCAGGC  892

seq1  ACCACTGCCTCTCTTGCAAAAAGATACAAGGAGTGGAGAAGAATCTGGAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTCTCTTGCAAAAAGATACAAGGAGTGGAGAAGAATCTGGAA  942

seq1  CATGACTTTGCTTCTCTATGTTATTCTTTTTTTTTTTTTTCTTTTTTTTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTTGCTTCTCTATGTTATTCTTTTTTTTTTTTTTCTTTTTTTTC  992

seq1  CAGAGCTGAGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGAGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCT  1042

seq1  ACCACTGAGCTAAATCCCCAACCCCGCTATGTTATTCTTAATAGGAGGAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCTAAATCCCCAACCCCGCTATGTTATTCTTAATAGGAGGAA  1092

seq1  CCAGGATCCTATTCAATGCTCCTGTTAGTCAGCTTTCCATTGCTGCAATG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCCTATTCAATGCTCCTGTTAGTCAGCTTTCCATTGCTGCAATG  1142

seq1  AGATACGTGAGATGTGCTCACAGTGGGGACTGAATGTCAACACCTGAAGC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACGTGAGATGTGCTCACAGTGGGGACTGAATGTCAACACCTGAAGC  1192

seq1  CTTGAGGGGTACAATTGAATTC  1209
      ||||||||||||||||||||||
seq2  CTTGAGGGGTACAATTGAATTC  1214


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