BAC Information

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BAC

Clone NameB6Ng01-045A02
Chromosome18 (Build37)
Map Location 85,809,590 - 85,898,721
singlet/doubletdoublet
Overlap geneLOC665382
Upstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045A02.bB6Ng01-045A02.g
ACCDH870592DH870593
length847987
definitionDH870592|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A02, 5' end.DH870593|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,809,590 - 85,810,284)(85,897,730 - 85,898,721)
sequence
gaattcaactcccagaagtcacatcaagtagtttatacccattgtaattt
cagccctagttcaaacattccttttggcttctgtaatcatctgcatgcac
atgtgcacataaccccagaacacagttatatacaccagctaaacttataa
ctaaagaattaaaaatgtagtgatgtttcactgtttctttttctttcttt
ttttttttttttactttttattaggtatttttctcatttatttccaatgc
tatcccaaaagtcccccataccctcccacccactcccctacccacccact
cccacgttttggccctggcgttcccctgtactggggcatataaagtttgc
aagtccaatgggcctctcttcccagtgatggccgactaggccatcttctt
ctacatatgcagctagagtcaagaagtccggggtactggttagttcataa
tgttgttctacctatagggttgcagatccctttagctccttgggtacttt
ctctagctcctccattgggggccctgtgatccatccaatagctgactgtg
agcatccacttctgtgtttgctaggccctggcatagtctcacaagagaca
gctatatctgggtcctttcagcaaaatcttgctagtatatgcaatggtgt
cagcgtttggaagctgattatggggtggatccctggatatggcagctcta
gatgatccatccttttgacacagctccaaactttgtctctgtaactcctt
tcatgggtatttgctttccaattctaagaaggggcaaagtgtaaaacttt
ggtcttctttcttcttgagtttcatgcgtttagcaaattgtatctca
gaattcttctcaaattcatcccacttctgcttgccttcgctcagggacag
ctgttttctgggccagcactctccatggggggctattgccttctcacttc
cagagtggtaactctgaattcttcccttctttacttctcctaattatttc
atccattgttgtttgagaaacacctttgctggcctcaggagtgtgtctcc
aacttactattaaattaaaatttcgcatattggctatatcagaatcagcc
ccttgataggagttttgaatttacttgaacaaagcatatagaggaaaatt
taatttagcattgacagctatatcttgggacacaggaaatcttctatgta
atcatcaatataaaatgtcactttcctgaacattgacataaattggctta
caaactggagctttttttttctctaaaactctgtggttgctaatggcatt
taacttctttattcagcttttaagtatctgctggtatctgacttttcatg
tttagttttttaaccttgagaatctaaacaccttggttaggcatttctaa
ttttagaaatcagtttgtattgccctacatgatcacagcaaattcttata
atggttggtttccttttcttttgttaatgcctttgtgacaaaatgagaaa
aaatatagtggagtaaaaaataacttaaaatgaagataatatgctgagat
gtaaaatgtcctaaaagggaatcagatgcttgtgttgattgatacttcag
aactttctcactgaaaaatgtgttgaaatgtcatttaaacacaatggata
taaatttaggcacatctctaaatgtctgtactgggaaaaagactctctga
cttcatcattagcagacatccaagtctgaaagtagcattagttaaatagt
tatcctcagttattttatcatcttcatttaaataacgattggatatatca
ttatttaaatgatagaatcatgacatttgcaggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85809590_85810284
seq2: B6Ng01-045A02.b_39_733

seq1  GAATTCAACTCCCAGAAGTCACATCAAGTAGTTTATACCCATTGTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCCAGAAGTCACATCAAGTAGTTTATACCCATTGTAATTT  50

seq1  CAGCCCTAGTTCAAACATTCCTTTTGGCTTCTGTAATCATCTGCATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTAGTTCAAACATTCCTTTTGGCTTCTGTAATCATCTGCATGCAC  100

seq1  ATGTGCACATAACCCCAGAACACAGTTATATACACCAGCTAAACTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACATAACCCCAGAACACAGTTATATACACCAGCTAAACTTATAA  150

seq1  CTAAAGAATTAAAAATGTAGTGATGTTTCACTGTTTCTTTTTCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAATTAAAAATGTAGTGATGTTTCACTGTTTCTTTTTCTTTCTTT  200

seq1  TTTTTTTTTTTTACTTTTTATTAGGTATTTTTCTCATTTATTTCCAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTACTTTTTATTAGGTATTTTTCTCATTTATTTCCAATGC  250

seq1  TATCCCAAAAGTCCCCCATACCCTCCCACCCACTCCCCTACCCACCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAAAGTCCCCCATACCCTCCCACCCACTCCCCTACCCACCCACT  300

seq1  CCCACGTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGC  350

seq1  AAGTCCAATGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAATGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTT  400

seq1  CTACATATGCAGCTAGAGTCAAGAAGTCCGGGGTACTGGTTAGTTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATGCAGCTAGAGTCAAGAAGTCCGGGGTACTGGTTAGTTCATAA  450

seq1  TGTTGTTCTACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTT  500

seq1  CTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTG  550

seq1  AGCATCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACA  600

seq1  GCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTATATGCAATGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTATATGCAATGGTGT  650

seq1  CAGCGTTTGGAAGCTGATTATGGGGTGGATCCCTGGATATGGCAG  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTTGGAAGCTGATTATGGGGTGGATCCCTGGATATGGCAG  695

seq1: chr18_85897730_85898721
seq2: B6Ng01-045A02.g_65_1050 (reverse)

seq1  TTTCCTGCAAATGTCATGATTCTATCATTTTAAATTAAATGATATATCCA  50
      ||||||||||||||||||||||||||| |||||||  |||||||||||||
seq2  TTTCCTGCAAATGTCATGATTCTATCA-TTTAAAT--AATGATATATCCA  47

seq1  ATCGTTATTTAAATTGAAGATGATAAAAATAACTGAGGATAACTATTTAA  100
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  ATCGTTATTTAAA-TGAAGATGAT-AAAATAACTGAGGATAACTATTTAA  95

seq1  CTAATGCTACTTTCAGACTTGGATGTCTGCTAATGATGAAGTCAGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTACTTTCAGACTTGGATGTCTGCTAATGATGAAGTCAGAGAGT  145

seq1  CTTATATCCCAGTACAGACATTTAGAGATGTGCCTAAATTTATATCCATT  200
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTT-TTTCCCAGTACAGACATTTAGAGATGTGCCTAAATTTATATCCATT  194

seq1  GTGTTTAAATGACATTTCAACACATTTTTCAGTGAGAAAGTTCTGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAATGACATTTCAACACATTTTTCAGTGAGAAAGTTCTGAAGTA  244

seq1  TCAATCAACACAAGCATCTGATTCCCTTTTAGGACATTTTACATCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAACACAAGCATCTGATTCCCTTTTAGGACATTTTACATCTCAGC  294

seq1  ATATTATCTTCATTTTAAGTTATTTTTTACTCCACTATATTTTTTCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCTTCATTTTAAGTTATTTTTTACTCCACTATATTTTTTCTCAT  344

seq1  TTTGTCACAAAGGCATTAACAAAAGAAAAGGAAACCAACCATTATAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACAAAGGCATTAACAAAAGAAAAGGAAACCAACCATTATAAGAA  394

seq1  TTTGCTGTGATCATGTAGGGCAATACAAACTGATTTCTAAAATTAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGATCATGTAGGGCAATACAAACTGATTTCTAAAATTAGAAAT  444

seq1  GCCTAACCAAGGTGTTTAGATTCTCAAGGTTAAAAAACTAAACATGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACCAAGGTGTTTAGATTCTCAAGGTTAAAAAACTAAACATGAAAA  494

seq1  GTCAGATACCAGCAGATACTTAAAAGCTGAATAAAGAAGTTAAATGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATACCAGCAGATACTTAAAAGCTGAATAAAGAAGTTAAATGCCAT  544

seq1  TAGCAACCACAGAGTTTTAGAGAAAAAAAAAGCTCCAGTTTGTAAGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCACAGAGTTTTAGAGAAAAAAAAAGCTCCAGTTTGTAAGCCAA  594

seq1  TTTATGTCAATGTTCAGGAAAGTGACATTTTATATTGATGATTACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCAATGTTCAGGAAAGTGACATTTTATATTGATGATTACATAGA  644

seq1  AGATTTCCTGTGTCCCAAGATATAGCTGTCAATGCTAAATTAAATTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTGTGTCCCAAGATATAGCTGTCAATGCTAAATTAAATTTTCC  694

seq1  TCTATATGCTTTGTTCAAGTAAATTCAAAACTCCTATCAAGGGGCTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGCTTTGTTCAAGTAAATTCAAAACTCCTATCAAGGGGCTGATT  744

seq1  CTGATATAGCCAATATGCGAAATTTTAATTTAATAGTAAGTTGGAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATAGCCAATATGCGAAATTTTAATTTAATAGTAAGTTGGAGACAC  794

seq1  ACTCCTGAGGCCAGCAAAGGTGTTTCTCAAACAACAATGGATGAAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAGGCCAGCAAAGGTGTTTCTCAAACAACAATGGATGAAATAAT  844

seq1  TAGGAGAAGTAAAGAAGGGAAGAATTCAGAGTTACCACTCTGGAAGTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAGTAAAGAAGGGAAGAATTCAGAGTTACCACTCTGGAAGTGAG  894

seq1  AAGGCAATAGCCCCCCATGGAGAGTGCTGGCCCAGAAAACAGCTGTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATAGCCCCCCATGGAGAGTGCTGGCCCAGAAAACAGCTGTCCCT  944

seq1  GAGCGAAGGCAAGCAGAAGTGGGATGAATTTGAGAAGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAAGGCAAGCAGAAGTGGGATGAATTTGAGAAGAATTC  986