BAC Information

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BAC

Clone NameB6Ng01-046A01
Chromosome18 (Build37)
Map Location 72,834,861 - 73,002,727
singlet/doubletdoublet
Overlap genenone
Upstream geneDcc, LOC629684
Downstream geneLOC100043411, LOC100042955, Rkhd2, Smad4, Elac1, Me2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046A01.bB6Ng01-046A01.g
ACCDH871293DH871294
length1,1301,161
definitionDH871293|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A01, 5' end.DH871294|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,001,575 - 73,002,727)(72,834,861 - 72,836,021)
sequence
gaattcagatgtctttttttccttgtaaatttaaagatgtaaaaaaaaga
aatccttgatgtagaaaggaaacaagtgtctgggatattgaagtatacaa
gaaagcacagatgatatggagatgaaaggttacttaccatggtgttagta
agccattacatcactgcagtgtttagctcttcaaggagtttttatatata
ttacctctagaacctaacaaatatcaagcaagatttttaaagaaaacttt
atttcccacgattcttataacatactagtgaaatacaatagacgtatgag
aaagatctactccaaaacattcaaacagatttttatatattgaacattct
atgtaaaggggtaaaaaaagcattttgtgctgatttatggagcaggtgac
cacattcttctgtactatactttagttatgctggttctttatctacaaac
aaatgaaaccatctagtgtgtccttttttgttttggttccttttctgtat
attatgcgtataacttttttttctttactcatattgcatacattccattt
tgtgagtgtgctatcatatatgtttgttgatatttggtttgttcctcatt
ttcaattcttatgaatagtgttaattgtaagatttctctctcttttctgg
aataaagttactatttcaggatattctatgtctgtgtaaccccaaaacaa
ctttgcttctgttggaaaacaatgctaagttaggaatatcacagagtttg
acagatacaaaaatacatattaggtctcttctcctcccatcttcaccagt
cctgagctcctgaactatacagattatattttcttctctacctatcttct
ctgcttacagaatcctctgaggcaccccaagctgccctgaagaatctgct
acccttgttagacctctattctccttcacctttcaccaccttcatcagat
ctgctgatcagaccatgcgcccaagatcccatcacagctgctacaccagg
accattgagttacttctgttatcatatctacaacagcagaacatcaggga
ccaaagcattcaggtagcaaaaggccttgaaagatgcgtaaacaaaccca
ggcctatgacacctctcaagtacagctacc
gaattcctactttaactctaactataactctaattcttagatattgtggg
agttatgaacataatacttcactgtagaatagtgcaatttacattctgtt
tactgcttgaattagttatattgttatctctgctaaaaaagcaatataac
tgcatttatgaagcatttgttcttgttgtttcccatacttttaaaagatg
taattcttccaaatatttgtaaaatcattactatattactaaaaatgtaa
ctcagagaagtttgctccataggtggacagcagaaccaggtgtggtccaa
gtcccaagcccctgctttgttcagtgcaccattgtgtttttgttaccatg
acaactaaattttgctattacctcccacccaagaatcagggaagccaatt
attcctagggcaggactataatgccatagtcaagttcctatctttcactt
tcattttcttcacatccaggttgttattagcaacaagttgctgtgctgtg
aaataaatgagatggaacaaatccccaactatttctcacccccttctctg
ttacttgaataatttactaactctggatacctaaaatgagttctttgaat
ctaatgatagtttggtaattgccctttgacctccattacatattttcaag
aaaacttttgatcatttcattcatatttgaaaatgtaatatttcttggtt
taatgaaaagtcacattagtcctttttgggattatatgtttagaagtatt
gaaaccattatgccagtaaagcaacaaatattaaaacacagtgtaatcta
gcactcatggtttcactgaaccagttcacaaccttctgcaggacttttga
gaaaaactgggatccagaatgctgtggcagctggttgtgtatgattttct
tcagctcccaggctagagactatccagaaaaatcagtctcagcacaggga
tacactttgttcaccactcattcaagcctaaattctgagaacaagctgca
ggtgggctggaaaggagaatgagggcaatcctctttgtcagccggctaag
taccaagcaactttatgtttttaattaacagagccctgctgttggcttgg
tctcagagactaatgctaaacagaacccaatacccacccacgcctggctg
gcactggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_73001575_73002727
seq2: B6Ng01-046A01.b_43_1172 (reverse)

seq1  GGTAGCTGTACTCTGA-AGGTGTCATAGTGCCCTGGTGTTTGTTTACTGC  49
      |||||||||||| ||| ||||||||||  | ||||| |||||||||| ||
seq2  GGTAGCTGTACT-TGAGAGGTGTCATA--GGCCTGG-GTTTGTTTAC-GC  45

seq1  ATTCTTTCAAAGGCCTTTTGCTACCTGGATGGCTTTGGTCCCTGGATGTT  99
      | |||||| |||||||||||||||||| || |||||||||||| ||||||
seq2  A-TCTTTC-AAGGCCTTTTGCTACCTGAAT-GCTTTGGTCCCT-GATGTT  91

seq1  CCTGCTGTTGTAGATATTGATAACAGAGTTAACCTCAATGGTCCTGGTGT  149
       ||||||||||||||| ||||||||||  ||| |||||||||||||||||
seq2  -CTGCTGTTGTAGATA-TGATAACAGAAGTAA-CTCAATGGTCCTGGTGT  138

seq1  AGCAGGCCTGTGATGGGGATCCTTGGGCCGCATGGTTCTGGATCAGCAGA  199
      |||||  ||||||| ||||| |||||| ||||||| ||| ||||||||||
seq2  AGCAG--CTGTGAT-GGGAT-CTTGGG-CGCATGG-TCT-GATCAGCAGA  181

seq1  TCTGATGAAGGTGGGTGGAAAGGTGGAAGGAGAATAGAGGTCTGACAGGG  249
      ||||||||||||||   ||||||| |||||||||||||||||| ||| ||
seq2  TCTGATGAAGGTGG--TGAAAGGT-GAAGGAGAATAGAGGTCTAACAAGG  228

seq1  GTAGCAGATTCCTCAGGGCAGCTTGGGGTGCCTCAGAGGATTCTGTAAGC  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGATTCTTCAGGGCAGCTTGGGGTGCCTCAGAGGATTCTGTAAGC  278

seq1  AGAGAAGATAGGTAGAGGAAGAAAATATAATCTGTATAGTTCAGGAGCCT  349
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AGAGAAGATAGGTAGA-GAAGAAAATATAATCTGTATAGTTCAGGAG-CT  326

seq1  CAGGACTGGTGAAGATGGGAGGAGAAGAGACCTAATATGTATTTTTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGGTGAAGATGGGAGGAGAAGAGACCTAATATGTATTTTTGTAT  376

seq1  CTGTCAAACTCTGTGATATTCCTAACTTAGCATTGTTTTCCAACAGAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAACTCTGTGATATTCCTAACTTAGCATTGTTTTCCAACAGAAGC  426

seq1  AAAGTTGTTTTGGGGTTACACAGACATAGAATATCCTGAAATAGTAACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTTTTGGGGTTACACAGACATAGAATATCCTGAAATAGTAACTT  476

seq1  TATTCCAGAAAAGAGAGAGAAATCTTACAATTAACACTATTCATAAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGAAAAGAGAGAGAAATCTTACAATTAACACTATTCATAAGAAT  526

seq1  TGAAAATGAGGAACAAACCAAATATCAACAAACATATATGATAGCACACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAGGAACAAACCAAATATCAACAAACATATATGATAGCACACT  576

seq1  CACAAAATGGAATGTATGCAATATGAGTAAAGAAAAAAAAGTTATACGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGGAATGTATGCAATATGAGTAAAGAAAAAAAAGTTATACGCA  626

seq1  TAATATACAGAAAAGGAACCAAAACAAAAAAGGACACACTAGATGGTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAGAAAAGGAACCAAAACAAAAAAGGACACACTAGATGGTTTC  676

seq1  ATTTGTTTGTAGATAAAGAACCAGCATAACTAAAGTATAGTACAGAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGTAGATAAAGAACCAGCATAACTAAAGTATAGTACAGAAGAA  726

seq1  TGTGGTCACCTGCTCCATAAATCAGCACAAAATGCTTTTTTTACCCCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCACCTGCTCCATAAATCAGCACAAAATGCTTTTTTTACCCCTTT  776

seq1  ACATAGAATGTTCAATATATAAAAATCTGTTTGAATGTTTTGGAGTAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAATGTTCAATATATAAAAATCTGTTTGAATGTTTTGGAGTAGAT  826

seq1  CTTTCTCATACGTCTATTGTATTTCACTAGTATGTTATAAGAATCGTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATACGTCTATTGTATTTCACTAGTATGTTATAAGAATCGTGGG  876

seq1  AAATAAAGTTTTCTTTAAAAATCTTGCTTGATATTTGTTAGGTTCTAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTTTTCTTTAAAAATCTTGCTTGATATTTGTTAGGTTCTAGAG  926

seq1  GTAATATATATAAAAACTCCTTGAAGAGCTAAACACTGCAGTGATGTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATATATAAAAACTCCTTGAAGAGCTAAACACTGCAGTGATGTAAT  976

seq1  GGCTTACTAACACCATGGTAAGTAACCTTTCATCTCCATATCATCTGTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTAACACCATGGTAAGTAACCTTTCATCTCCATATCATCTGTGC  1026

seq1  TTTCTTGTATACTTCAATATCCCAGACACTTGTTTCCTTTCTACATCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTATACTTCAATATCCCAGACACTTGTTTCCTTTCTACATCAAG  1076

seq1  GATTTCTTTTTTTTACATCTTTAAATTTACAAGGAAAAAAAGACATCTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTTTTTTACATCTTTAAATTTACAAGGAAAAAAAGACATCTGA  1126

seq1  ATTC  1153
      ||||
seq2  ATTC  1130

seq1: chr18_72834861_72836021
seq2: B6Ng01-046A01.g_64_1224

seq1  GAATTCCTACTTTAACTCTAACTATAACTCTAATTCTTAGATATTGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTTTAACTCTAACTATAACTCTAATTCTTAGATATTGTGGG  50

seq1  AGTTATGAACATAATACTTCACTGTAGAATAGTGCAATTTACATTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAACATAATACTTCACTGTAGAATAGTGCAATTTACATTCTGTT  100

seq1  TACTGCTTGAATTAGTTATATTGTTATCTCTGCTAAAAAAGCAATATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTGAATTAGTTATATTGTTATCTCTGCTAAAAAAGCAATATAAC  150

seq1  TGCATTTATGAAGCATTTGTTCTTGTTGTTTCCCATACTTTTAAAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATGAAGCATTTGTTCTTGTTGTTTCCCATACTTTTAAAAGATG  200

seq1  TAATTCTTCCAAATATTTGTAAAATCATTACTATATTACTAAAAATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCCAAATATTTGTAAAATCATTACTATATTACTAAAAATGTAA  250

seq1  CTCAGAGAAGTTTGCTCCATAGGTGGACAGCAGAACCAGGTGTGGTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAGTTTGCTCCATAGGTGGACAGCAGAACCAGGTGTGGTCCAA  300

seq1  GTCCCAAGCCCCTGCTTTGTTCAGTGCACCATTGTGTTTTTGTTACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGCCCCTGCTTTGTTCAGTGCACCATTGTGTTTTTGTTACCATG  350

seq1  ACAACTAAATTTTGCTATTACCTCCCACCCAAGAATCAGGGAAGCCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAATTTTGCTATTACCTCCCACCCAAGAATCAGGGAAGCCAATT  400

seq1  ATTCCTAGGGCAGGACTATAATGCCATAGTCAAGTTCCTATCTTTCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGGGCAGGACTATAATGCCATAGTCAAGTTCCTATCTTTCACTT  450

seq1  TCATTTTCTTCACATCCAGGTTGTTATTAGCAACAAGTTGCTGTGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTTCACATCCAGGTTGTTATTAGCAACAAGTTGCTGTGCTGTG  500

seq1  AAATAAATGAGATGGAACAAATCCCCAACTATTTCTCACCCCCTTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGAGATGGAACAAATCCCCAACTATTTCTCACCCCCTTCTCTG  550

seq1  TTACTTGAATAATTTACTAACTCTGGATACCTAAAATGAGTTCTTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAATAATTTACTAACTCTGGATACCTAAAATGAGTTCTTTGAAT  600

seq1  CTAATGATAGTTTGGTAATTGCCCTTTGACCTCCATTACATATTTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATAGTTTGGTAATTGCCCTTTGACCTCCATTACATATTTTCAAG  650

seq1  AAAACTTTTGATCATTTCATTCATATTTGAAAATGTAATATTTCTTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTGATCATTTCATTCATATTTGAAAATGTAATATTTCTTGGTT  700

seq1  TAATGAAAAGTCACATTAGTCCTTTTTGGGATTATATGTTTAGAAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAGTCACATTAGTCCTTTTTGGGATTATATGTTTAGAAGTATT  750

seq1  GAAACCATTATGCCAGTAAAGCAACAAATATTAAAACACAGTGTAATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATTATGCCAGTAAAGCAACAAATATTAAAACACAGTGTAATCTA  800

seq1  GCACTCATGGTTTCACTGAACCAGTTCACAACCTTCTGCAGGACTTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATGGTTTCACTGAACCAGTTCACAACCTTCTGCAGGACTTTTGA  850

seq1  GAAAAAACTGGGATCCAGAATGCTGTGGCAGCTGGTTGTGTATGATTTTC  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAAACTGGGATCCAGAATGCTGTGGCAGCTGGTTGTGTATGATTTTC  899

seq1  TTCAGCTCCCAGGCTAGAGACTATCCAG-AAAATCAGTCTCAGCACAGGG  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCAGCTCCCAGGCTAGAGACTATCCAGAAAAATCAGTCTCAGCACAGGG  949

seq1  ATACACTTTGTTCACCACTCATTCAAGCCTAAAATCTGAGAAC-AGCTGC  998
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  ATACACTTTGTTCACCACTCATTCAAGCCTAAATTCTGAGAACAAGCTGC  999

seq1  AGGTGGGCTGGACAGAGAAATGA-GGCAATCCTCTTTG-CAGCC-GCTAA  1045
      |||||||||||| ||   ||||| |||||||||||||| ||||| |||||
seq2  AGGTGGGCTGGAAAGGAGAATGAGGGCAATCCTCTTTGTCAGCCGGCTAA  1049

seq1  GTAACCAAGCAACTTTATGTATTTAATTTACAGAGCCCCTGCTGTT-GCT  1094
      || ||||||||||||||||| ||||||| |||||| |||||||||| |||
seq2  GT-ACCAAGCAACTTTATGTTTTTAATTAACAGAG-CCCTGCTGTTGGCT  1097

seq1  T-GCCTCAG-GACTGATGCTAAGACAGAGACACCCAATACACACAC-TGC  1141
      | | ||||| |||| ||||||| |||||   ||||||||| ||| |  ||
seq2  TGGTCTCAGAGACTAATGCTAA-ACAGA---ACCCAATACCCACCCACGC  1143

seq1  CTGGCTTGCCAGCTGGAGCA  1161
      |||||| ||   ||||||||
seq2  CTGGCTGGC--ACTGGAGCA  1161