BAC Information

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BAC

Clone NameB6Ng01-046F21
Chromosome12 (Build37)18 (Build37)
Map Location 50,980,211 - 50,981,26914,443,169 - 14,443,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077
Downstream geneLOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046F21.bB6Ng01-046F21.g
ACCDH871552DH871553
length1,155525
definitionDH871552|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F21, 5' end.DH871553|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,980,211 - 50,981,269)(14,443,169 - 14,443,321)
sequence
gaattctcatgcacttgaattggtagaattaacatagtaaaaaagttatc
ttaccaaaagccatctacaaattcaatgcaattcccatcaaaattccaac
atgattctctatggaccttgaaagagcaattctcaacttcatatggaaaa
aaaacaaaaatcccaggatagctaaagcaatcctgggcaataaatgaact
tctggaggaatcaccatcacggatttcaagcagaacaaaagatcaataga
aataaacaccacatggtaatgaaatctaatagaagtctgagcaataaacc
cacagatatatggatacttgatttttgacaaacaaactatacaatgaaaa
aataaccaacaacaaagatcttcaacaaatggtgctcgtccaattgagta
tctgcatgtagaagaatggaaacagacccatatttatcacccaacataga
actcatgtccaagtggattaagacatcaaccaaaaactggacacactcaa
tctaatgaagagaaaatgggaaactgccttgaacacattgacacaggata
caacttccttaatagaacagcaatagctcaggaactaagttcaaccatta
ataaatgggacctcatgaaactgtgttatctaaccattcgcattctagac
aaaagaataaaagagaaggaaagaactgcaaacccatgcttttgcttcct
tacagtccagtcttgaatattacagggatattgttgttggtgaactgcac
atgaagacaaaccacaaatgattttgaaatgatattatgtaaattctatt
tgaaatagtaagaatgtaatacaaattcaagttttgatgtcaaattatga
ctctagtggtgttttagagaatctcctatcacaatttattggtttaaaac
tctttcctctttgcataaatcacaagcaatagccactctctatttctctc
tctctttttttctttcttttataatactagggaacaaagtactagtcagc
aatagttcacacttaagaggtctggtccctcaaatactcaggaaggaaat
acgagacaagtgaggagcaagactgaggaaagacattcgagaactacctc
actggatcattccaataagctcaaccgaactgttgtggagcagaagaact
tgctg
gaattcagcaccccactctcatcaatggacagattctggaaacagaaact
aaacagagacacattgaaactaacagaagctatgaaaaaatggatttaac
agatatctacagaacattttattctaaaacaaaagtatataccttcttct
catctcctcatggtaccttctccataagtggatattagccgagatactta
gaattcccaagatacaatttgaaaaacacatgaaactcaagaagaaggaa
gaccaaagtgtggatacttcattccttcttagaatgtggaacaaaatagc
catggaagtagttacagagataacgttcagaactgagacagaaggaagaa
ccatccagagactgccccacctagggatctaccccataaacaaccaaacc
cccagacaccaagatttttatgacaggaccctgatacatacatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50980211_50981269
seq2: B6Ng01-046F21.b_161_1190

seq1  GCAATTCTCAACTTCATATGGAAAAAAAACAAAAATCCCAGGATAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTCAACTTCATATGGAAAAAAAACAAAAATCCCAGGATAGCTAA  50

seq1  AGCAATCCTGGGCAATAAATGAACTTCTGGAGGAATCACCATCACGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTGGGCAATAAATGAACTTCTGGAGGAATCACCATCACGGATT  100

seq1  TCAAGCAGAACAAAAGATCAATAGAAATAAACACCACATGGTAATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGAACAAAAGATCAATAGAAATAAACACCACATGGTAATGAAAT  150

seq1  CTAATAGAAGTCTGAGCAATAAACCCACAGATATATGGATACTTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGAAGTCTGAGCAATAAACCCACAGATATATGGATACTTGATTTT  200

seq1  TGACAAACAAACTATACAATGAAAAAATAACCAACAACAAAGATCTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACAAACTATACAATGAAAAAATAACCAACAACAAAGATCTTCAA  250

seq1  CAAATGGTGCTCGTCCAATTGAGTATCTGCATGTAGAAGAATGGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTGCTCGTCCAATTGAGTATCTGCATGTAGAAGAATGGAAACAG  300

seq1  ACCCATATTTATCACCCAACATAGAACTCATGTCCAAGTGGATTAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATTTATCACCCAACATAGAACTCATGTCCAAGTGGATTAAGACA  350

seq1  TCAACCAAAAACTGGACACACTCAATCTAATGAAGAGAAAATGGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAAAACTGGACACACTCAATCTAATGAAGAGAAAATGGGAAACT  400

seq1  GCCTTGAACACATTGACACAGGATACAACTTCCTTAATAGAACAGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACACATTGACACAGGATACAACTTCCTTAATAGAACAGCAATA  450

seq1  GCTCAGGAACTAAGTTCAACCATTAATAAATGGGACCTCATGAAACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGAACTAAGTTCAACCATTAATAAATGGGACCTCATGAAACTGTG  500

seq1  TTATCTAACCATTCGCATTCTAGACAAAAGAATAAAAGAGAAGGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAACCATTCGCATTCTAGACAAAAGAATAAAAGAGAAGGAAAGAA  550

seq1  CTGCAAACCCATGCTTTTGCTTCCTTACAGTCCAGTCTTGAATATTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACCCATGCTTTTGCTTCCTTACAGTCCAGTCTTGAATATTACAG  600

seq1  GGATATTGTTGTTGGTGAACTGCACATGAAGACAAACCACAAATGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGTTGTTGGTGAACTGCACATGAAGACAAACCACAAATGATTTT  650

seq1  GAAATGATATTATGTAAATTCTATTTGAAATAGTAAGAATGTAATACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATATTATGTAAATTCTATTTGAAATAGTAAGAATGTAATACAAA  700

seq1  TTCAAGTTTTGATGTCAAATTATGACTCTAGTGGTGTTTTAGAGAATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTGATGTCAAATTATGACTCTAGTGGTGTTTTAGAGAATCTC  750

seq1  CTATCACAATTTATTGGTTTAAAACTCTTTCCTCTTTGCATAAATCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAATTTATTGGTTTAAAACTCTTTCCTCTTTGCATAAATCACAA  800

seq1  GCAATAGCCACTCTCTTATTTCTCTCTCTCTTTTTTTTCTTTTCTTTTTA  850
      ||||||||||||||| |||||||||||||||||||||   ||||||||  
seq2  GCAATAGCCACTCTC-TATTTCTCTCTCTCTTTTTTT--CTTTCTTTT--  845

seq1  TTAATACTTAGGGAACAAAGTACTAGTCAGCAATAGTTTCAACACTTAAG  900
       |||||| ||||||||||||||||||||||||||||||   |||||||| 
seq2  ATAATAC-TAGGGAACAAAGTACTAGTCAGCAATAGTT--CACACTTAA-  891

seq1  GAGATCT-GTCCCTCAAAATACTCAAGAGAGGAAATACAGAGACAAAGTG  949
      ||| ||| ||||||| ||||||||| || ||||||||| ||||| |||||
seq2  GAGGTCTGGTCCCTC-AAATACTCAGGA-AGGAAATAC-GAGAC-AAGTG  937

seq1  AGGAGCAGAGACTGAAGGAAAGACCATCCAGAGACTACCCCACCTGGGAT  999
      ||||||| |||||| |||||||||  || ||| |||||| |||   ||||
seq2  AGGAGCA-AGACTG-AGGAAAGACATTCGAGA-ACTACCTCAC--TGGAT  982

seq1  CCATCCCATATAGAGCCACCAAACCCAGACACTGTTGTGGAAGCCAAGAA  1049
      |  ||| ||| ||  | ||| |        |||||||||| |||  ||||
seq2  CATTCCAATA-AGCTCAACCGA--------ACTGTTGTGG-AGC--AGAA  1020

seq1  GTACTTGCTG  1059
      | ||||||||
seq2  GAACTTGCTG  1030

seq1: chr18_14443169_14443321
seq2: B6Ng01-046F21.g_238_523 (reverse)

seq1  TATATATATATATATATATGTGTGT-------------------------  25
      ||||||||||||||||||||| |||                         
seq2  TATATATATATATATATATGTATGTATCAGGGTCCTGTCATAAAAATCTT  50

seq1  -GTGTGTGTGTGTGTGTGTGTGTGTG------------------------  50
       |||| || | || ||  ||| | ||                        
seq2  GGTGTCTGGGGGTTTGGTTGTTTATGGGGTAGATCCCTAGGTGGGGCAGT  100

seq1  --------------------------------------------------  50
                                                        
seq2  CTCTGGATGGTTCTTCCTTCTGTCTCAGTTCTGAACGTTATCTCTGTAAC  150

seq1  -----------------TGT-----------------------GTATCCA  60
                       |||                       |||||||
seq2  TACTTCCATGGCTATTTTGTTCCACATTCTAAGAAGGAATGAAGTATCCA  200

seq1  TACTTTGGTCTTTGTTCTTCTTGAGTTTCATGTGTTTTGCAAATTGTATC  110
       |||||||||||  |||||||||||||||||||||||| |||||||    
seq2  CACTTTGGTCTTCCTTCTTCTTGAGTTTCATGTGTTTTTCAAATTG----  246

seq1  TTATATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTA  153
         ||||||||| ||||||||| ||| ||||||||||||||||
seq2  ---TATCTTGGGAATTCTAAGTATCTCGGCTAATATCCACTTA  286