BAC Information

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BAC

Clone NameB6Ng01-048H03
Chromosome1 (Build37)18 (Build37)
Map Location 50,832,373 - 50,832,65724,104,163 - 24,105,016
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H03.bB6Ng01-048H03.g
ACCDH873003DH873004
length839859
definitionDH873003|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H03, 5' end.DH873004|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,373 - 50,832,657)(24,104,163 - 24,105,016)
sequence
gaattctttgttaagctctgtaccacattttttaatagttttatttggtt
ctctggagtctaacttcttaagttctttgtatatattggatattagccct
ctatctgatttaggataggtaaagaccttttcctaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagcttttcaatttta
tgaggtcccatttctcgattctcgatcttacagcacaagccattggtgtt
ctcttcaggaatttttcccctgtgcccatatctttgaggctcttccccac
tttctctgctataagtttcactgtctctggttttatgtggaggtccttga
ttcacttggaattgagctttgtagaaggagataagaatggaatgatttgt
gccgggtgaggtggggcacacctttaatccctgcactcgggaggccgatg
caagacagatttctgggttcaaggtcagcttgatctatgaagtgagttcc
aggacagccagggctacacagagaaaccctgtctcgaaaaacaaaaaaca
aaacaaaacaaaaaaaggatcgatttgcattcttctacatttgtgggcta
tgttttgttttgtttgagacaggactttcttgctatgtagatattgctgg
cctgcaaatcacagtatagtccagactggttttgtggcagtctttctgcc
tcagcctccaaattcctggcatacatgtatgtactaccacacctagacta
agttaatttctttctttctctacctcacccccttttagagacagagtctt
gccatatagtccagcctgactgtaaattcacttatgtaa
gaattcctcagagaaggaatgctaagagataggaatgctaaagccctgct
tgacagaagcccagattaaaaaaacaaaaaaaaaacaaaaaaaaaaaaca
aaaaaaacaaacaaacaaacaaaaaaaaaacaggtcctatagctgaacta
gctggaggcatgggaggagaggaaaaagagaaatgactgtcttgggatgt
caaatggctgtcaccagcagaaagtgctagagtttgggaagggtagatag
tgaaaagccatgtgttcaagagtacaattcagggaagaagaaacagaatc
gcatccggtagacagtaaaataagtgggtattttgatctgtatgctttca
tcatttctaaaaatcacaccttagagtaaaatcagagccttaaaggaatc
cagtacaccaatatattttttttcaaaacactttaaaggtgcagcatatt
tagaaggagcaaaaatgtggccattttcgcttttgaagaggtaataacca
tcggctatataaaatgccacttaaacaaaagcattatgggctaatataca
gctttgcttgggcagggtgcattgcacagggctctgggtttcagccacca
gcacctcatgaacagcctggtgaagcactcttgtaaccccatactcagaa
ggtggagaggtcaaggtcatcctcaaagcccacctgtgtacctgagtcaa
acccccttagaaagtgcaaagaaaactgtttttggctgaggcttaaagaa
actgaatctgaccccttatttggtccatggggttcatttcccatttaaaa
aaaaaaaaagtttaagggccgcctgatatatatgtgagtgagagcccccg
aaacccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832373_50832657
seq2: B6Ng01-048H03.b_109_393 (reverse)

seq1  AAGGAACTCCACTTAAAACCAGAGACACTGAAACTTATAGAGGAGAAGGT  50
      ||||| |||||| |||||||||||||| ||||||||||||  ||||| ||
seq2  AAGGACCTCCACATAAAACCAGAGACAGTGAAACTTATAGCAGAGAAAGT  50

seq1  GGGGAAAAGCCTCCAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAA  100
      |||||| |||||| ||||||||||||||||||||||||||||||| ||||
seq2  GGGGAAGAGCCTCAAAGATATGGGCACAGGGGAAAAATTCCTGAAGAGAA  100

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATGGACAAATGGGAACTCATA  150
      || ||||||||||||||||||||| |||||| || |||||||| ||||||
seq2  CACCAATGGCTTGTGCTGTAAGATCGAGAATCGAGAAATGGGACCTCATA  150

seq1  AAGTTGCAAACCTTCTGTAAGGCAAAAGACACCTTCAATAAGACAAAAAG  200
      || ||| ||| |||||||||||||||||||||| ||||||||||||||||
seq2  AAATTGAAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAG  200

seq1  GCCACCAACAGATTGGGAGAGGATCTTTACCTATCCTAAATCAAATAGGG  250
      |||||||||||||| ||| | | |||||||||||||||||||| |||| |
seq2  GCCACCAACAGATTAGGAAAAGGTCTTTACCTATCCTAAATCAGATAGAG  250

seq1  GACTAAGATCCAATATATATAAAGAACTTAAGAAG  285
      | |||| |||||||||||| |||||||||||||||
seq2  GGCTAATATCCAATATATACAAAGAACTTAAGAAG  285

seq1: chr18_24104163_24105016
seq2: B6Ng01-048H03.g_66_924

seq1  GAATTCCTCAGAGAAGGAATGCTAAGAGATAGGAATGCTAAAGCCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGAAGGAATGCTAAGAGATAGGAATGCTAAAGCCCTGCT  50

seq1  TGACAGAAGCCCAGATTAAAAAAACAAAAAAAAAACAAAAAAAAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGCCCAGATTAAAAAAACAAAAAAAAAACAAAAAAAAAAAACA  100

seq1  AAAAAAACAAACAAACAAACAAAAAAAAAACAGGTCCTATAGCTGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAACAAACAAACAAAAAAAAAACAGGTCCTATAGCTGAACTA  150

seq1  GCTGGAGGCATGGGAGGAGAGGAAAAAGAGAAATGACTGTCTTGGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGCATGGGAGGAGAGGAAAAAGAGAAATGACTGTCTTGGGATGT  200

seq1  CAAATGGCTGTCACCAGCAGAAAGTGCTAGAGTTTGGGAAGGGTAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTGTCACCAGCAGAAAGTGCTAGAGTTTGGGAAGGGTAGATAG  250

seq1  TGAAAAGCCATGTGTTCAAGAGTACAATTCAGGGAAGAAGAAACAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCATGTGTTCAAGAGTACAATTCAGGGAAGAAGAAACAGAATC  300

seq1  GCATCCGGTAGACAGTAAAATAAGTGGGTATTTTGATCTGTATGCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGGTAGACAGTAAAATAAGTGGGTATTTTGATCTGTATGCTTTCA  350

seq1  TCATTTCTAAAAATCACACCTTAGAGTAAAATCAGAGCCTTAAAGGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAAAAATCACACCTTAGAGTAAAATCAGAGCCTTAAAGGAATC  400

seq1  CAGTACACCAATATATTTTTTTTCAAAACACTTTAAAGGTGCAGCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACCAATATATTTTTTTTCAAAACACTTTAAAGGTGCAGCATATT  450

seq1  TAGAAGGAGCAAAAATGTGGCCATTTTCGCTTTTGAAGAGGTAATAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGCAAAAATGTGGCCATTTTCGCTTTTGAAGAGGTAATAACCA  500

seq1  TCGGCTATATAAAATGCCACTTAAAC-AAAGCATTAT-GGCTAATATACA  548
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  TCGGCTATATAAAATGCCACTTAAACAAAAGCATTATGGGCTAATATACA  550

seq1  GC-TTGCTT-GGCAGGGTGCA-TGCACAAGGCTCTGGG-TTCAGCCACCA  594
      || |||||| ||||||||||| |||||| ||||||||| |||||||||||
seq2  GCTTTGCTTGGGCAGGGTGCATTGCACAGGGCTCTGGGTTTCAGCCACCA  600

seq1  GCACCTCATGAACAGCCTGGTGAAGCACTCTTGTAACCCCAATACTCAGA  644
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCACCTCATGAACAGCCTGGTGAAGCACTCTTGTAACCCC-ATACTCAGA  649

seq1  AGGTGGAGAGGTCAAGGTCATCCTCAAAGCCAACCTGTGTACCTGAGTCA  694
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTGGAGAGGTCAAGGTCATCCTCAAAGCCCACCTGTGTACCTGAGTCA  699

seq1  AACACACTTAGAAAGTGCAAAGAAAACTGTTTTTGGCTGAGGCCTAAAGA  744
      ||| | ||||||||||||||||||||||||||||||||||||| ||||| 
seq2  AACCCCCTTAGAAAGTGCAAAGAAAACTGTTTTTGGCTGAGGCTTAAAG-  748

seq1  AAACTGAATCTGATCACCTTTATTTGGTCAATGGGTTCAATTTCCCATTT  794
      |||||||||||||   || |||||||||| ||||| |  |||||||||||
seq2  AAACTGAATCTGA--CCCCTTATTTGGTCCATGGGGTTCATTTCCCATTT  796

seq1  AAAAAAAAAAAAAAGTTTAAGGCCAGCCTGAATATATATAGTGAGTGAGA  844
       ||||||||||||||||||||| | ||||| |||||||| ||||||||||
seq2  -AAAAAAAAAAAAAGTTTAAGGGCCGCCTG-ATATATAT-GTGAGTGAGA  843

seq1  GCC------ACCCAGA  854
      |||      |||||||
seq2  GCCCCCGAAACCCAGA  859