BAC Information

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BAC

Clone NameB6Ng01-049C10
Chromosome18 (Build37)
Map Location 84,683,677 - 84,800,122
singlet/doubletdoublet
Overlap geneZfp407, Cndp1
Upstream geneTshz1, Zadh2, LOC669856
Downstream geneEG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C10.bB6Ng01-049C10.g
ACCDH873495DH873496
length995987
definitionDH873495|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C10, 5' end.DH873496|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,683,677 - 84,684,685)(84,799,108 - 84,800,122)
sequence
gaattctgtgaactacaccacacacaaactaaatcaaaaactcagtttct
gacagcagttacacattctccccctctgtctttatagagtgctttactta
tgagtcacacacagagacacgttacatactattagtccaaaagcaccata
caactgccttctaccctgacctgacacctggttacaattacatcttcaga
aaactaaaccagtagttgaacaaggacaggctaacaaaagccaaccaatc
aacaggcagtaacagtattgcagctcagcaccaccccctaaatgtaaaaa
gaacctaccatgtatctcttgcaagcaatgaatgtgcatatgtccacatt
cacactcagtacaacaccaacacagcatctgggccagggatatcaggttg
aaaaatgctattgacataaaagtttactaagccaatcaatgatttttcca
ataaatactagtagcaataagatcgtgttagccttactaaaatataattt
aacacttttccaccatcacccccaaaagaaaggggctttaaatagaaaaa
cagtatagccattgtattacctgagtgctccacagtccaatgctcttaag
gttacatcaagcaaaaacaccaatctggccagagtccaagacagaatcgt
aataaccaaattctcagacacagtaagctttgacagagaaaaaaaattaa
ggctttgatcatttccaggtatcaactacttacatgcctcacaaagctaa
actacaccagaaacattaaaccagaactttgtgaccacactaaaaaagta
gaataatttatcatacttatgagcagagtgacacagatggcactcactgc
agctgaggtcatgccctatactatggagatgtagtatagaggatgggtat
ctaaggccccacatcacactcagcactatcctacacactgaccactctag
gacatctgacaaggtttcagtaatgtggtctggatgcttgtgaaa
gaattcactgtgaagagacccagggactagagggatgaggtgagaatgct
gggaaaacaggaagcagaagctgagatgcccggtagaaatgtttgtcaac
aaagctaatgtgagaagaagcaacggggtcatggctggaaggagcacaga
tcggatgccagaaaaccttcccgaggcaggggaaaggaagaacagaggca
ccgaggaggtggtgagagataaaatctttgccaagggaaggaattagcct
ctcttgagaaaagtgtcaggtagacaaagagtgaagatggtggagcagtg
tgttttgctgtcgaccgccccctgctgggcaggaaaatgatttacacaga
gcaaaatgatggccatgggcatagctgtgaataagagacccaacatagag
cacatggcttaaaggtttggcgttgtgtgtgtccatgtagatggatgact
gtgctctgtgttcgagagctcgatgagactgttagttgtgatgtagagta
gtgaaaatgtatccctacggagaccacagaacactggcagtcatgagcac
aaatggaggaaaacaaaaccaaagaactggacatcctaatgaggaccaag
aatggtcagagaagtagcagacaggtcactcaggatttcagatgtgaggc
tgtcaacccagcacaatttagttagtctgagtggctaataaagtgaacct
tcactctgaagtgaccaaacgggagacttgccttccacaaagggtgtgtg
agagcagggaaagactgctgggcaggcatggcagagaaagggaccagaga
catacttaagcttacgtgtacaatgggatgtgctcaagctggaatgaagt
actgtagacgctgagttcgctcagttcttcagaactggagagcgtcactc
ggactactgcagtttagtctggtttagacaaagtcagagctatgagaaga
cactggaagtagaggtggtaatgacctggagctactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84683677_84684685
seq2: B6Ng01-049C10.b_44_1038

seq1  GAATTCTGTGAACTACACCACACACAAACTAAATCAAAAACTCAGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAACTACACCACACACAAACTAAATCAAAAACTCAGTTTCT  50

seq1  GACAGCAGTTACACATTCTCCCCCTCTGTCTTTATAGAGTGCTTTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGTTACACATTCTCCCCCTCTGTCTTTATAGAGTGCTTTACTTA  100

seq1  TGAGTCACACACAGAGACACGTTACATACTATTAGTCCAAAAGCACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACACACAGAGACACGTTACATACTATTAGTCCAAAAGCACCATA  150

seq1  CAACTGCCTTCTACCCTGACCTGACACCTGGTTACAATTACATCTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTTCTACCCTGACCTGACACCTGGTTACAATTACATCTTCAGA  200

seq1  AAACTAAACCAGTAGTTGAACAAGGACAGGCTAACAAAAGCCAACCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAACCAGTAGTTGAACAAGGACAGGCTAACAAAAGCCAACCAATC  250

seq1  AACAGGCAGTAACAGTATTGCAGCTCAGCACCACCCCCTAAATGTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCAGTAACAGTATTGCAGCTCAGCACCACCCCCTAAATGTAAAAA  300

seq1  GAACCTACCATGTATCTCTTGCAAGCAATGAATGTGCATATGTCCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTACCATGTATCTCTTGCAAGCAATGAATGTGCATATGTCCACATT  350

seq1  CACACTCAGTACAACACCAACACAGCATCTGGGCCAGGGATATCAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAGTACAACACCAACACAGCATCTGGGCCAGGGATATCAGGTTG  400

seq1  AAAAATGCTATTGACATAAAAGTTTACTAAGCCAATCAATGATTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTATTGACATAAAAGTTTACTAAGCCAATCAATGATTTTTCCA  450

seq1  ATAAATACTAGTAGCAATAAGATCGTGTTAGCCTTACTAAAATATAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACTAGTAGCAATAAGATCGTGTTAGCCTTACTAAAATATAATTT  500

seq1  AACACTTTTCCACCATCACCCCCAAAAGAAAGGGGCTTTAAATAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTCCACCATCACCCCCAAAAGAAAGGGGCTTTAAATAGAAAAA  550

seq1  CAGTATAGCCATTGTATTACCTGAGTGCTCCACAGTCCAATGCTCTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGCCATTGTATTACCTGAGTGCTCCACAGTCCAATGCTCTTAAG  600

seq1  GTTACATCAAGCAAAAACACCAATCTGGCCAGAGTCCAAGACAGAATCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATCAAGCAAAAACACCAATCTGGCCAGAGTCCAAGACAGAATCGT  650

seq1  AATAACCAAATTCTCAGACACAGTAAGCTTTGACAGAGAAAAAAAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAAATTCTCAGACACAGTAAGCTTTGACAGAGAAAAAAAATTAA  700

seq1  GGCTTTGATCATTTCCAGGTATCAACTACTTACATGCCTCACAAAGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGATCATTTCCAGGTATCAACTACTTACATGCCTCACAAAGCTAA  750

seq1  ACTACACCAGAAACATTAAACCAGAACTTTGTGACCACACTAAAAAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACCAGAAACATTAAACCAGAACTTTGTGACCACACTAAAAAAGTA  800

seq1  GAATAATTTATCATACTTATGAGCAGAGTGACACAGATGGCACCTCACTG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATAATTTATCATACTTATGAGCAGAGTGACACAGATGGCA-CTCACTG  849

seq1  CAGCTGAAGTCATGCCCTATACTATGAGAATGTAGTATAGAAGGATGGGT  900
      ||||||| ||||||||||||||||||   ||||||||||| |||||||||
seq2  CAGCTGAGGTCATGCCCTATACTATGGAGATGTAGTATAG-AGGATGGGT  898

seq1  AATCCTAAGGCCCCACATCACACTCAGCAACCTAATCTCTACACAACTGA  950
      |   |||||||||||||||||||||||||  || ||| |||||| |||||
seq2  A--TCTAAGGCCCCACATCACACTCAGCA--CT-ATC-CTACAC-ACTGA  941

seq1  CCACTCCTTAGACATCTGACCACAGTTTTCAGTAAATGTGGTCTGGATGC  1000
      ||||| ||  ||||||||||   || ||||||| ||||||||||||||||
seq2  CCACT-CTAGGACATCTGAC--AAGGTTTCAGT-AATGTGGTCTGGATGC  987

seq1  TTTGTGAAA  1009
       ||||||||
seq2  -TTGTGAAA  995

seq1: chr18_84799108_84800122
seq2: B6Ng01-049C10.g_70_1056 (reverse)

seq1  GAGTAGCTCACAGTGTCATTTACCACCTCCTACCTCTCAGTTGTCTTCCT  50
      ||||||||| ||| |||| ||||||||| |||| || ||| |||||| ||
seq2  GAGTAGCTC-CAG-GTCA-TTACCACCT-CTACTTC-CAG-TGTCTT-CT  43

seq1  CATAGCTCTGAACCTTTTGTCTAAACCCAGACCTAAAACTGCAGTTGGTC  100
      |||||||||||    |||||||||| ||||||   ||||||||| | |||
seq2  CATAGCTCTGA---CTTTGTCTAAA-CCAGAC--TAAACTGCAG-TAGTC  86

seq1  CGAGTGAACGCTCTTCCAGTTTCTGAAGACCTGGAGCGGAACTCAGCGTC  150
      |||||| |||||| ||||| ||||||||| || |||| ||||||||||||
seq2  CGAGTG-ACGCTC-TCCAG-TTCTGAAGAACT-GAGC-GAACTCAGCGTC  131

seq1  TACAGTTACTTCATTCCAGCTTGAGCACATCCCCATTGGTTACCACGTAA  200
      ||||| |||||||||||||||||||||||| |||||||  || |||||||
seq2  TACAG-TACTTCATTCCAGCTTGAGCACAT-CCCATTG--TA-CACGTAA  176

seq1  GCCTTAAGTATGTCTCTGGTCCCTTTTCTCTTGCCATGCCTGCCCAGCAG  250
      | ||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  G-CTTAAGTATGTCTCTGGTCCC-TTTCTC-TGCCATGCCTGCCCAGCAG  223

seq1  TCTTTCCCTGCTCTCACACACCCTTTGTGGAAGGCAAGTCTCCCGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTGCTCTCACACACCCTTTGTGGAAGGCAAGTCTCCCGTTTGG  273

seq1  TCACTTCAGAGTGAAGGTTCACTTTATTAGCCACTCAGACTAACTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGAGTGAAGGTTCACTTTATTAGCCACTCAGACTAACTAAATT  323

seq1  GTGCTGGGTTGACAGCCTCACATCTGAAATCCTGAGTGACCTGTCCTGCT  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGCTGGGTTGACAGCCTCACATCTGAAATCCTGAGTGACCTGT-CTGCT  372

seq1  ACTTCTCTGACCATTCTTGGTCCTCATTAGGATGTCCAGTTCTTTGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGACCATTCTTGGTCCTCATTAGGATGTCCAGTTCTTTGGTTT  422

seq1  TGTTTTCCTCCATTTGTGCTCATGACTGCCAGTGTTCTGTGGTCTCCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTCCATTTGTGCTCATGACTGCCAGTGTTCTGTGGTCTCCGTA  472

seq1  GGGATACATTTTCACTACTCTACATCACAACTAACAGTCTCATCGAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACATTTTCACTACTCTACATCACAACTAACAGTCTCATCGAGCTC  522

seq1  TCGAACACAGAGCACAGTCATCCATCTACATGGACACACACAACGCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACACAGAGCACAGTCATCCATCTACATGGACACACACAACGCCAAA  572

seq1  CCTTTAAGCCATGTGCTCTATGTTGGGTCTCTTATTCACAGCTATGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGCCATGTGCTCTATGTTGGGTCTCTTATTCACAGCTATGCCCA  622

seq1  TGGCCATCATTTTGCTCTGTGTAAATCATTTTCCTGCCCAGCAGGGGGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCATTTTGCTCTGTGTAAATCATTTTCCTGCCCAGCAGGGGGCG  672

seq1  GTCGACAGCAAAACACACTGCTCCACCATCTTCACTCTTTGTCTACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGACAGCAAAACACACTGCTCCACCATCTTCACTCTTTGTCTACCTGA  722

seq1  CACTTTTCTCAAGAGAGGCTAATTCCTTCCCTTGGCAAAGATTTTATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCTCAAGAGAGGCTAATTCCTTCCCTTGGCAAAGATTTTATCTC  772

seq1  TCACCACCTCCTCGGTGCCTCTGTTCTTCCTTTCCCCTGCCTCGGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCTCCTCGGTGCCTCTGTTCTTCCTTTCCCCTGCCTCGGGAAGG  822

seq1  TTTTCTGGCATCCGATCTGTGCTCCTTCCAGCCATGACCCCGTTGCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGCATCCGATCTGTGCTCCTTCCAGCCATGACCCCGTTGCTTCT  872

seq1  TCTCACATTAGCTTTGTTGACAAACATTTCTACCGGGCATCTCAGCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATTAGCTTTGTTGACAAACATTTCTACCGGGCATCTCAGCTTCT  922

seq1  GCTTCCTGTTTTCCCAGCATTCTCACCTCATCCCTCTAGTCCCTGGGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTTTTCCCAGCATTCTCACCTCATCCCTCTAGTCCCTGGGTCT  972

seq1  CTTCACAGTGAATTC  1015
      |||||||||||||||
seq2  CTTCACAGTGAATTC  987