BAC Information

Click to search

BAC

Clone NameB6Ng01-052L22
Chromosome18 (Build37)
Map Location 31,224,160 - 31,347,329
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L22.bB6Ng01-052L22.g
ACCDH876007DH876008
length5111,147
definitionDH876007|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L22, 5' end.DH876008|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,346,813 - 31,347,329)(31,224,160 - 31,225,328)
sequence
ttgtgaggctatgctagtacctggcaaatacagaagtgaatgctcacagt
catctattggatggaacagggtccccaatgaaggagctagagaaagtacc
caaggaactgaaggggtctgcagccctataggaggaacaacaatatgaac
taatcagtaccccccagagcttgtgtctctagctgcatatgtagcagagg
atggcctagtctgccatcaatgggtacagaggcccttggtcttgcaaaga
ttatattccccagtacaggggattgccagggccaggaagcaggagtgggt
gggttggggagcagggccaggggagggtatagggaactttcggagaggaa
actaggaaaagggatagcatttgaaatgtaaatgaagaaaatatctaata
aaaattaacattaaaaaagaaatataaatcttgctatatttcttttgtgc
atgttttgtttgtttactttgtgtgggtgagtgagcacatgtaggtgtgt
gtgtgtgtgtg
gaattcattagactatttagtgaaataatctgatgatttactcagacttg
tgttactccatttaatgaaaaataatggtcacttcagtttccttttaata
attgctaaaagcaatttccataaatatacataatttaacaagacaaatat
tgatacatgtacatgaaaatagggcaaaagaataagagaaaaggtgtaaa
aatcaaattaaatcccataatgtcttaaatgtaaaatgagaatagattag
aaatttagatctaaacttttgacagaccaggctaatggagagacatgact
actcacataattgtgtctttatggagagagtaattggttgtataatgcaa
actaaatatttctagttccagaatgaatatgaatttttacttaaaagagc
aaccacctggccagcactccttaaaaccccctctcttatctatcatggtt
aagttaatacatagcactctttaagatcttatccatagctaatatgtaga
caaaacttttcatagaaaattacagggcattttatttagttatgtaaaca
cataacaacactcagagcaaataatttcataaagtaacaatagcagtaag
agcagcaaagatagttatttgatacctaactcttttatatacactatatt
gaaaatgcatttctacacattaaaaatacatttattgctatgacctagac
cttctacattttaaaaaacacctatgtagtagaaaaagctgttacttaaa
agttttcaataaattctttttacttaagttttcacgttgatactatttgc
aaagagtgaaacatttaaatagcttggctttaaatcttgagaaacataca
aaacattatgaaacaaaatctctccaaaatgctgttgctttcaacaactg
gacatgtgggcctaccctccagttccatgaatggtttacatctaatcaag
tgttggccaaaggggaaccatagaacccctatataacacaaactattgct
aaacctttggttactcctccacaaactgatgatagcctacatacacaaat
cattaaacatagagaagtcaactgtgcctacctacatcctcccattactg
aaagtgtcaagtacaggagttacatgctacgaagaagtaacacaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31346813_31347329
seq2: B6Ng01-052L22.b_44_560 (reverse)

seq1  CACACACACACACACACCTACATGTGCTCACTCACCCACACAAAGTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACCTACATGTGCTCACTCACCCACACAAAGTAAAC  50

seq1  AAACAAAACATGCACAAAAGAAATATAGCAAGATTTATATTTCTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACATGCACAAAAGAAATATAGCAAGATTTATATTTCTTTTTTA  100

seq1  ATGTTAATTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCC  150

seq1  CTTTTCCTAGTTTCCTCTCCGAAAGTTCCCTATACCCTCCCCTGGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTAGTTTCCTCTCCGAAAGTTCCCTATACCCTCCCCTGGCCCTG  200

seq1  CTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCAATCCCCTGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCAATCCCCTGTACT  250

seq1  GGGGAATATAATCTTTGCAAGACCAAGGGCCTCTGTACCCATTGATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATATAATCTTTGCAAGACCAAGGGCCTCTGTACCCATTGATGGCA  300

seq1  GACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGG  350

seq1  GGTACTGATTAGTTCATATTGTTGTTCCTCCTATAGGGCTGCAGACCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGATTAGTTCATATTGTTGTTCCTCCTATAGGGCTGCAGACCCCT  400

seq1  TCAGTTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTTCCA  450

seq1  TCCAATAGATGACTGTGAGCATTCACTTCTGTATTTGCCAGGTACTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGATGACTGTGAGCATTCACTTCTGTATTTGCCAGGTACTAGCA  500

seq1  TAGCCTCACAAGAATTC  517
      |||||||||||||||||
seq2  TAGCCTCACAAGAATTC  517

seq1: chr18_31224160_31225328
seq2: B6Ng01-052L22.g_66_1212

seq1  GAATTCATTAGACTATTTAGTGAAATAATCTGATGATTTACTCAGACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGACTATTTAGTGAAATAATCTGATGATTTACTCAGACTTG  50

seq1  TGTTACTCCATTTAATGAAAAATAATGGTCACTTCAGTTTCCTTTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCCATTTAATGAAAAATAATGGTCACTTCAGTTTCCTTTTAATA  100

seq1  ATTGCTAAAAGCAATTTCCATAAATATACATAATTTAACAAGACAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAAAGCAATTTCCATAAATATACATAATTTAACAAGACAAATAT  150

seq1  TGATACATGTACATGAAAATAGGGCAAAAGAATAAGAGAAAAGGTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGTACATGAAAATAGGGCAAAAGAATAAGAGAAAAGGTGTAAA  200

seq1  AATCAAATTAAATCCCATAATGTCTTAAATGTAAAATGAGAATAGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATTAAATCCCATAATGTCTTAAATGTAAAATGAGAATAGATTAG  250

seq1  AAATTTAGATCTAAACTTTTGACAGACCAGGCTAATGGAGAGACATGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGATCTAAACTTTTGACAGACCAGGCTAATGGAGAGACATGACT  300

seq1  ACTCACATAATTGTGTCTTTATGGAGAGAGTAATTGGTTGTATAATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATAATTGTGTCTTTATGGAGAGAGTAATTGGTTGTATAATGCAA  350

seq1  ACTAAATATTTCTAGTTCCAGAATGAATATGAATTTTTACTTAAAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATTTCTAGTTCCAGAATGAATATGAATTTTTACTTAAAAGAGC  400

seq1  AACCACCTGGCCAGCACTCCTTAAAACCCCCTCTCTTATCTATCATGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGGCCAGCACTCCTTAAAACCCCCTCTCTTATCTATCATGGTT  450

seq1  AAGTTAATACATAGCACTCTTTAAGATCTTATCCATAGCTAATATGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATACATAGCACTCTTTAAGATCTTATCCATAGCTAATATGTAGA  500

seq1  CAAAACTTTTCATAGAAAATTACAGGGCATTTTATTTAGTTATGTAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTTCATAGAAAATTACAGGGCATTTTATTTAGTTATGTAAACA  550

seq1  CATAACAACACTCAGAGCAAATAATTTCATAAAGTAACAATAGCAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAACACTCAGAGCAAATAATTTCATAAAGTAACAATAGCAGTAAG  600

seq1  AGCAGCAAAGATAGTTATTTGATACCTAACTCTTTTATATACACTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAGATAGTTATTTGATACCTAACTCTTTTATATACACTATATT  650

seq1  GAAAATGCATTTCTACACATTAAAAATACATTTATTGCTATGACCTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCATTTCTACACATTAAAAATACATTTATTGCTATGACCTAGAC  700

seq1  CTTCTACATTTTAAAAAACACCTATGTAGTAGAAAAAGCTGTTACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACATTTTAAAAAACACCTATGTAGTAGAAAAAGCTGTTACTTAAA  750

seq1  AGTTTTCAATAAATTCTTTTTACTTAAGTTTTCAGGTTGATACTATTTGC  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTTTTCAATAAATTCTTTTTACTTAAGTTTTCACGTTGATACTATTTGC  800

seq1  AAAGAGTGAAACATTTAAATAGCTTGGCTTTAAATCTTGAGAAACATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGAAACATTTAAATAGCTTGGCTTTAAATCTTGAGAAACATACA  850

seq1  AAACATTATGAAACAAAATCTCTCCAAAATGCTGTTGCTTTCAACAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTATGAAACAAAATCTCTCCAAAATGCTGTTGCTTTCAACAACTG  900

seq1  GACATGTGGGCCTACCCTCCAGTTCCATGAATGGTTTACATCTAATCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGGGCCTACCCTCCAGTTCCATGAATGGTTTACATCTAATCAAG  950

seq1  TTGTTGGCCAAAGGGGGAACCATAGGAACCCCTATATAACACAAACTATT  1000
       ||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  -TGTTGGCCAAA-GGGGAACCATA-GAACCCCTATATAACACAAACTATT  997

seq1  GCTAAACCTTTTGGTTACT-CTCCACAAACTGATGATAAGGCCCTACATA  1049
      |||||||| |||||||||| ||||||||||||||||||    ||||||||
seq2  GCTAAACC-TTTGGTTACTCCTCCACAAACTGATGATA---GCCTACATA  1043

seq1  CACAAATCATTAAACATAGAGAAGTCAAACTGGTGCCTACCTACATCCTT  1099
      |||||||||||||||||||||||||| |||| ||||||||||||||||| 
seq2  CACAAATCATTAAACATAGAGAAGTC-AACT-GTGCCTACCTACATCCT-  1090

seq1  CCCCATTACTGAGAAGTGTTCAAGGTTACAGGAAGTTACATGCTACCAGA  1149
       ||||||||||| ||||| |||||  |||||| |||||||||||||    
seq2  -CCCATTACTGA-AAGTG-TCAAG--TACAGG-AGTTACATGCTAC----  1130

seq1  TAAGAAAGTTAAACACAATC  1169
       ||| ||||  |||||||||
seq2  GAAG-AAGT--AACACAATC  1147