BAC Information

Click to search

BAC

Clone NameB6Ng01-052M22
Chromosome18 (Build37)6 (Build37)
Map Location 83,204,841 - 83,205,351146,823,770 - 146,824,496
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
Downstream gene4921531P14Rik, LOC665284, Tshz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052M22.bB6Ng01-052M22.g
ACCDH876049DH876050
length673727
definitionDH876049|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M22, 5' end.DH876050|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,204,841 - 83,205,351)(146,823,770 - 146,824,496)
sequence
gaattctgtgtttcatagtttctcctgatattcacatcttatgaaactat
ggcacacatcaaaattaagaaacacaaataaaattagtatagactctatt
cagcttttgccaattttaaggcttattgttttcattagttcatgtgtatg
gtgtgtgtggaggaaacagacacagcagccggcgcacattctcagggtgt
atgttcttggatttggaaattatagtttagtgtatgcttttccatgccaa
gtttagaccctcagcagagaacactgctcctacacaggactgtagtggga
taatgctatttttagaggttcttggtgtcccaggtcccgtacatggtctg
tcctggaggctcttttgcttctgaaggctgattcaccaagtggtttgaaa
acacccagttgctgccaccttgggtggtaagagccgggtcctggtaacta
gaccacagctgacttattctctcagatgttttttctgcttttcatggtca
tgtgttcttttttcttttttctttttttttttttttaaatcttggaggat
gctgtgacttcccacgagtgtgctgtggggttgtttaatcctaggcagtg
ggaaatcctcagactgtttgcacttgttttgaagaccgatttgactctgc
cacatcagacctcaggtccagta
gaattctctcaagctgttagccggaacagatccttctccattttttctca
ggtagttactgttatgaaatataatgcggcaaggggctacctggtgggct
ctggccaaggtgagcccctgagtaattgtgccatgcagcaggtctggtat
aagggggtctacttggggaatggaggggagcgaggacctgaagaagggta
gaggcaaatgagtagacatgttgaaaggcagacaggagcagagctatgag
ggcagagaagaggatgggcacagagaaggacagaaatgggggagagagag
agactggctgggaatgtggagaaagagagagagagagagagagagagaga
gagtgctggagtagtgggttagttcttttatatgcagcccacagctgaag
cacctggaggtagcacttccaggtaaggtaagccacccttgctaggtatc
tgggaggtagcacttgatgtaagccacccttgctaggtatctgggaggag
cctagtggaattgcctgtatgctaactttacagcgatgagaaacataact
gataccgttcccttctgtaggaatatctgcgtgaccaacacggggcacat
ttctaaatgctcacccaggtaccagcactgactggggatctgctgaagcc
ttccgtgattgcgtgctacctataagttctccaccatctcaccctatttc
catacatcttcttcttcatggttccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_83204841_83205351
seq2: B6Ng01-052M22.b_204_713

seq1  AAACAGACACAGCAGCCGGCGCACATTCTCAGGGTGTATGTTCTTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACACAGCAGCCGGCGCACATTCTCAGGGTGTATGTTCTTGGATT  50

seq1  TGGAAATTATAGTTTAGTGTATGCTTTTCCATGCCAAGTTTAGACCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTATAGTTTAGTGTATGCTTTTCCATGCCAAGTTTAGACCCTCA  100

seq1  GCAGAGAACACTGCTCCTACACAGGACTGTAGTGGGATAATGCTATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAACACTGCTCCTACACAGGACTGTAGTGGGATAATGCTATTTTT  150

seq1  AGAGGTTCTTGGTGTCCCAGGTCCCGTACATGGTCTGTCCTGGAGGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTTGGTGTCCCAGGTCCCGTACATGGTCTGTCCTGGAGGCTCT  200

seq1  TTTGCTTCTGAAGGCTGATTCACCAAGTGGTTTGAAAACACCCAGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGAAGGCTGATTCACCAAGTGGTTTGAAAACACCCAGTTGCT  250

seq1  GCCACCTTGGGTGGTAAGAGCCGGGTCCTGGTAACTAGACCACAGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTTGGGTGGTAAGAGCCGGGTCCTGGTAACTAGACCACAGCTGAC  300

seq1  TTATTCGCTCAGATGTTTTTTCTGCTTTTCATGGTCATGTGTTCTTTTTT  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTCAGATGTTTTTTCTGCTTTTCATGGTCATGTGTTCTTTTTT  350

seq1  CTTTTTTCTTTTTTTTTTTTTTTAAATCTTGGTGGATGCTGTGACTTCCC  400
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTTTTCTTTTTTTTTTTTTTTAAATCTTGGAGGATGCTGTGACTTCCC  400

seq1  ACAAGTGTGCTGTGGGGTTGTAGAATCCTAGGCAGTGGGAAATCCTCAGA  450
      || ||||||||||||||||||  |||||||||||||||||||||||||||
seq2  ACGAGTGTGCTGTGGGGTTGTTTAATCCTAGGCAGTGGGAAATCCTCAGA  450

seq1  CTGTTTGCACTTGTTTTGAAATACAGATTTGACTCTGCCACAGCAGACCA  500
      |||||||||||||||||| || || ||||||||||||||||| |||||| 
seq2  CTGTTTGCACTTGTTTTG-AAGACCGATTTGACTCTGCCACATCAGACCT  499

seq1  CAGGTCCAGTA  511
      |||||||||||
seq2  CAGGTCCAGTA  510

seq1: chr6_146823770_146824496
seq2: B6Ng01-052M22.g_69_795

seq1  GAATTCTCTCAAGCTGTTAGCCGGAACAGATCCTTCTCCATTTTTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAGCTGTTAGCCGGAACAGATCCTTCTCCATTTTTTCTCA  50

seq1  GGTAGTTACTGTTATGAAATATAATGCGGCAAGGGGCTACCTGGTGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTACTGTTATGAAATATAATGCGGCAAGGGGCTACCTGGTGGGCT  100

seq1  CTGGCCAAGGTGAGCCCCTGAGTAATTGTGCCATGCAGCAGGTCTGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAAGGTGAGCCCCTGAGTAATTGTGCCATGCAGCAGGTCTGGTAT  150

seq1  AAGGGGGTCTACTTGGGGAATGGAGGGGAGCGAGGACCTGAAGAAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTCTACTTGGGGAATGGAGGGGAGCGAGGACCTGAAGAAGGGTA  200

seq1  GAGGCAAATGAGTAGACATGTTGAAAGGCAGACAGGAGCAGAGCTATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAATGAGTAGACATGTTGAAAGGCAGACAGGAGCAGAGCTATGAG  250

seq1  GGCAGAGAAGAGGATGGGCACAGAGAAGGACAGAAATGGGGGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAAGAGGATGGGCACAGAGAAGGACAGAAATGGGGGAGAGAGAG  300

seq1  AGACTGGCTGGGAATGTGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTGGGAATGTGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA  350

seq1  GAGTGCTGGAGTAGTGGGTTAGTTCTTTTATATGCAGCCCACAGCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGAGTAGTGGGTTAGTTCTTTTATATGCAGCCCACAGCTGAAG  400

seq1  CACCTGGAGGTAGCACTTCCAGGTAAGGTAAGCCACCCTTGCTAGGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGAGGTAGCACTTCCAGGTAAGGTAAGCCACCCTTGCTAGGTATC  450

seq1  TGGGAGGTAGCACTTGATGTAAGCCACCCTTGCTAGGTATCTGGGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTAGCACTTGATGTAAGCCACCCTTGCTAGGTATCTGGGAGGAG  500

seq1  CCTAGTGGAATTGCCTGTATGCTAACTTTACAGCGATGAGAAACATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGGAATTGCCTGTATGCTAACTTTACAGCGATGAGAAACATAACT  550

seq1  GATACAGTTCCCTTCTGTAGGAATTATCTGCGTGACCAACACGGGGCACA  600
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATACCGTTCCCTTCTGTAGGAA-TATCTGCGTGACCAACACGGGGCACA  599

seq1  TTTCTAAAGGCTCACCCAGGTACCAGCACTGACTGGGGATCTGCTGAAGC  650
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATGCTCACCCAGGTACCAGCACTGACTGGGGATCTGCTGAAGC  649

seq1  CATAAGTGATTGCATGCTACCT-TAAGTTCTCCACCATCTCAACCCTATT  699
      | |  |||||||| |||||||| |||||||||||||||||| ||||||||
seq2  CTTCCGTGATTGCGTGCTACCTATAAGTTCTCCACCATCTC-ACCCTATT  698

seq1  CCCA-ACATCCTCTTCTTCATGGTTCCAT  727
       ||| ||||| ||||||||||||||||||
seq2  TCCATACATCTTCTTCTTCATGGTTCCAT  727