BAC Information

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BAC

Clone NameB6Ng01-054F01
Chromosome18 (Build37)
Map Location 62,025,021 - 62,157,095
singlet/doubletdoublet
Overlap geneAblim3, Sh3tc2
Upstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054F01.bB6Ng01-054F01.g
ACCDH877089DH877090
length1,1141,112
definitionDH877089|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F01, 5' end.DH877090|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,155,967 - 62,157,095)(62,025,021 - 62,025,918)
sequence
taattaaggtggtttacacgtcaatgccaccttacgacactaaccaaaga
gaagtaaaatcaacccaaagcaagtagaggaagcaggcaagcaggcaagc
agagtgagctacacagagaatgacattgtggataaaaaggataagacgga
aaatcagttttttaaaggatttttttaaaagtgtcacatctctgattagt
aagacaagaaaaagcaagaaaggcaaagggagacttgggaactaaactga
aaactatcaccaactttgtagaaatagaaaggggttggttattctctaga
ggtagtatttcattccccacacccttttccacctggacggctggcctctg
ggatgataccctctgtacttgtggtgagccttcacagcttgtgtctctct
ggactcccctcccctctgcaccccaaggtgtgctttcctaattgccttaa
agtgacatccaagattgaccattcattgtaaagagcatgcctagttcact
gcacaaggcaatcaaaagagcaagactgggggaaaaaaatgtctgcaaca
cacacgtctgatgacagacacgtattcaacaataaagaggcaaaggtcct
gattttaaatagtcaaaggccaggtggtagtggcacacgcctttaatccc
agcactcgggaggcaaaggcaggagaatctttgagtttcaggacagcctg
gcctgctgtgggagttctaggagagccagggctatacaaagaaaccctgt
ctcaaataaatgacagacagacaggcaggcaggcaggcagacagacagac
agacagacagacagatagatagatggatggatgtacagacaaatgacttg
tacaaacatttttcaaaaaaaatatataaagcccatgaaacaatgttcaa
aatcttcagtcactaagaaatgcagattaaaagcacaatggacaagatga
gattccatcccatctctcccactagtatgctaaatgaaacccatacaata
gcaatacagtgagacatgggggcactgtgtcatcacacatttctcatagg
atatgaaatgtgtgactctttagaaaaaagtcatagttctccaaatttta
aataagttacaaac
gaattccttacaaagcttggacccagtgtttggttagtatctgatgagaa
aatgttttcttctatttggggtgttatctgttcacattcttaagggttta
tttaggccaggcatggtagcatactccttattgttagctcttgggaggca
gaggcaggtgaatctctgtgagtttgaggtcagcctggtttatacagtgt
gttataggctagccagaactacatagtgagaactggtctcaaaacatatt
caagtgtattttttatagcataaaaggatgaagctttgatgatgtttaat
ttgtctacttttcctttgccgagtgtccttttatattatccgagaagcct
gtgccatgctcaaggacacaaagatctattcatctattttctctttaaaa
ttttacagtttagttcatatgtttgtctttgaaccattttgagttaataa
tttttatgtgtttataagaaacaatctattttctgtctttcttccctttg
cctgtgaatatccagttttcctggaaccacttatagaaaagactgttctt
tttttctttctttctctttctctattgaattatcctggcacccttgttga
aaatcaactggccatcaatataagggtttatttctggacacttgattcta
ttctattgattggcatgtcagtccatgtgctatgctagcagctcagcttt
gtagtaagtctttaacgtgagaagtgttggatccttgatgtgatttttca
tcgcttgctctttgtaatttgatatggattttatggactgatttatgcca
tctcaaagagcatatgctgaagcctgggcctccagtgctgatggcatttg
gggacggctgtcataagtaattaggtttaggtttggatgaggtcttgtgg
tagagtcctgtatgcagtgcattatagttcccttacaaggagctctctct
cctgcccttccccttttctctctacatgtgacacctatgatactgtgtgc
cactacccagatatcatttaatctaatgtttgttgtttttattgtgatta
ttaccatccataatagtctaaaaaaagttattttaacactagtgagtgct
ccagccagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62155967_62157095
seq2: B6Ng01-054F01.b_50_1163 (reverse)

seq1  GTTTGTAACTTTATGTTTAAAAATTTTGGAGAACTATGACTGTTTTCTAA  50
      ||||||||||   | |||||||  ||||||||||||||||| ||||||||
seq2  GTTTGTAACT---TATTTAAAA--TTTGGAGAACTATGACTTTTTTCTAA  45

seq1  AGAGGTCACACCATTTCATATCCCTATGAGAAATGTGTGATGACACCAGT  100
      ||| |||||| |||||||||| ||||||||||||||||||||||| ||||
seq2  AGA-GTCACA-CATTTCATAT-CCTATGAGAAATGTGTGATGACA-CAGT  91

seq1  GCCCCCATGTCCTCACTGTATTTGCTATTGTATGGGTTTCATTTTAGCCA  150
      |||||||||| ||||||||| |||||||||||||||||||| ||||| ||
seq2  GCCCCCATGT-CTCACTGTA-TTGCTATTGTATGGGTTTCA-TTTAG-CA  137

seq1  TACTAGTGGGGAGAGATGGGATGGAATCTCATCTTGTCCATTGTGCTTTT  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGT-GGGAGAGATGGGATGGAATCTCATCTTGTCCATTGTGCTTTT  186

seq1  AATCTGCATTTCCTTAGTGACTGAAGATTTTGAACATTGTTTCATGGGCT  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCATTT-CTTAGTGACTGAAGATTTTGAACATTGTTTCATGGGCT  235

seq1  TTATATATTTTTTTTGAAAAATGTTTGTACAAGTCATTTGTCTGTACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTTTTTTTGAAAAATGTTTGTACAAGTCATTTGTCTGTACATC  285

seq1  CATCCATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGCCTG  335

seq1  CCTGCCTGTCTGTCTGTCATTTATTTGAGACAGGGTTTCTTTGTATAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTCTGTCTGTCATTTATTTGAGACAGGGTTTCTTTGTATAGCC  385

seq1  CTGGCTCTCCTAGAACTCCCACAGCAGGCCAGGCTGTCCTGAAACTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTCCTAGAACTCCCACAGCAGGCCAGGCTGTCCTGAAACTCAAA  435

seq1  GATTCTCCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCAC  485

seq1  TACCACCTGGCCTTTGACTATTTAAAATCAGGACCTTTGCCTCTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTGGCCTTTGACTATTTAAAATCAGGACCTTTGCCTCTTTATTG  535

seq1  TTGAATACGTGTCTGTCATCAGACGTGTGTGTTGCAGACATTTTTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACGTGTCTGTCATCAGACGTGTGTGTTGCAGACATTTTTTTCCC  585

seq1  CCAGTCTTGCTCTTTTGATTGCCTTGTGCAGTGAACTAGGCATGCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTGCTCTTTTGATTGCCTTGTGCAGTGAACTAGGCATGCTCTTT  635

seq1  ACAATGAATGGTCAATCTTGGATGTCACTTTAAGGCAATTAGGAAAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATGGTCAATCTTGGATGTCACTTTAAGGCAATTAGGAAAGCAC  685

seq1  ACCTTGGGGTGCAGAGGGGAGGGGAGTCCAGAGAGACACAAGCTGTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGGTGCAGAGGGGAGGGGAGTCCAGAGAGACACAAGCTGTGAAG  735

seq1  GCTCACCACAAGTACAGAGGGTATCATCCCAGAGGCCAGCCGTCCAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCACAAGTACAGAGGGTATCATCCCAGAGGCCAGCCGTCCAGGTG  785

seq1  GAAAAGGGTGTGGGGAATGAAATACTACCTCTAGAGAATAACCAACCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGTGTGGGGAATGAAATACTACCTCTAGAGAATAACCAACCCCT  835

seq1  TTCTATTTCTACAAAGTTGGTGATAGTTTTCAGTTTAGTTCCCAAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCTACAAAGTTGGTGATAGTTTTCAGTTTAGTTCCCAAGTCTC  885

seq1  CCTTTGCCTTTCTTGCTTTTTCTTGTCTTACTAATCAGAGATGTGACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTTTCTTGCTTTTTCTTGTCTTACTAATCAGAGATGTGACACT  935

seq1  TTTAAAAAAATCCTTTAAAAAACTGATTTTCCGTCTTATCCTTTTTATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAATCCTTTAAAAAACTGATTTTCCGTCTTATCCTTTTTATCC  985

seq1  ACAATGTCATTCTCTGTGTAGCTCACTCTGCTTGCCTGCTTGCCTGCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCATTCTCTGTGTAGCTCACTCTGCTTGCCTGCTTGCCTGCTTC  1035

seq1  CTCTACTTGCTTTGGGTTGATTTTACTTCTCTTTGGTTAGTGTCGTAAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTGCTTTGGGTTGATTTTACTTCTCTTTGGTTAGTGTCGTAAGG  1085

seq1  TGGCATTGACGTGTAAACCACCTTAATTA  1129
      |||||||||||||||||||||||||||||
seq2  TGGCATTGACGTGTAAACCACCTTAATTA  1114

seq1: chr18_62025021_62025918
seq2: B6Ng01-054F01.g_302_1176

seq1  CTCAAAACATATTCAAGTGTATTTTTTATAGCATAAAAGGATGAAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACATATTCAAGTGTATTTTTTATAGCATAAAAGGATGAAGCTTT  50

seq1  GATGATGTTTAATTTGTCTACTTTTCCTTTGCCGAGTGTCCTTTTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTTTAATTTGTCTACTTTTCCTTTGCCGAGTGTCCTTTTATATT  100

seq1  ATCCGAGAAGCCTGTGCCATGCTCAAGGACACAAAGATCTATTCATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGAAGCCTGTGCCATGCTCAAGGACACAAAGATCTATTCATCTAT  150

seq1  TTTCTCTTTAAAATTTTACAGTTTAGTTCATATGTTTGTCTTTGAACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTAAAATTTTACAGTTTAGTTCATATGTTTGTCTTTGAACCAT  200

seq1  TTTGAGTTAATAATTTTTATGTGTTTATAAGAAACAATCTATTTTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTAATAATTTTTATGTGTTTATAAGAAACAATCTATTTTCTGTC  250

seq1  TTTCTTCCCTTTGCCTGTGAATATCCAGTTTTCCTGGAACCACTTATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCTTTGCCTGTGAATATCCAGTTTTCCTGGAACCACTTATAGA  300

seq1  AAAGACTGTTCTTTTTTTCTTTCTTTCTCTTTCTCTATTGAATTATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTTCTTTTTTTCTTTCTTTCTCTTTCTCTATTGAATTATCCTG  350

seq1  GCACCCTTGTTGAAAATCAACTGGCCATCAATATAAGGGTTTATTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTTGTTGAAAATCAACTGGCCATCAATATAAGGGTTTATTTCTGG  400

seq1  ACACTTGATTCTATTCTATTGATTGGCATGTCAGTCCATGTGCTATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGATTCTATTCTATTGATTGGCATGTCAGTCCATGTGCTATGCTA  450

seq1  GCAGCTCAGCTTTGTAGTAAGTCTTTAACGTGAGAAGTGTTGGATCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAGCTTTGTAGTAAGTCTTTAACGTGAGAAGTGTTGGATCCTTG  500

seq1  ATGTGATTTTTCATCGCTTGCTCTTTGTAATTTGATATGGATTTTATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTTTCATCGCTTGCTCTTTGTAATTTGATATGGATTTTATGGA  550

seq1  CTGATTTATGCCATCTCAAAGAGCATATGCTGAAGCCTGGGCCTCCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTATGCCATCTCAAAGAGCATATGCTGAAGCCTGGGCCTCCAGTG  600

seq1  CTGATGGCATTTGGGGACGGCTGTCATAAGGTAATTAGGTTTAGGTTTGG  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGATGGCATTTGGGGACGGCTGTCATAA-GTAATTAGGTTTAGGTTTGG  649

seq1  ATGAGGTCTTGTGGGTAGAGTCCTGTATGCAGTGGCATTATTAGTTCCCT  700
      |||||||||||| |||||||||||||||||||| |||||| |||||||||
seq2  ATGAGGTCTTGT-GGTAGAGTCCTGTATGCAGT-GCATTA-TAGTTCCCT  696

seq1  TACAAGGAGCTCTCTCTCCCTGCCCTTCCCCCTTTTCTCTCTACCATGTG  750
      ||||||||||||||||| ||||||||| ||||||||||||||| ||||||
seq2  TACAAGGAGCTCTCTCT-CCTGCCCTT-CCCCTTTTCTCTCTA-CATGTG  743

seq1  AACACTATTGATACTGTGTGCCACTACACCAGATATCATTTATAATTCTT  800
       ||||   ||||||||||||||||||| |||||||||||||   | ||| 
seq2  -ACACCTATGATACTGTGTGCCACTAC-CCAGATATCATTT---AATCTA  788

seq1  ATGTTTTGTTGTATTTATTTGTATATATTTACTATCATAAATAGTTTTAT  850
      ||| |||||||| |||| ||||  ||  |||| |||   |||||| |   
seq2  ATG-TTTGTTGTTTTTA-TTGT-GATTATTACCATCCATAATAGTCT--A  833

seq1  AAAAAAGTTTATTTATAAACACATAAGTGGATGCTCACAGCCAGCTAT  898
      |||||||||  ||||     |||  ||||  ||||| |||||||||||
seq2  AAAAAAGTTATTTTA-----ACACTAGTGAGTGCTC-CAGCCAGCTAT  875