BAC Information

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BAC

Clone NameB6Ng01-055B12
Chromosome18 (Build37)3 (Build37)
Map Location 90,554,466 - 90,554,57341,059,524 - 41,059,737
singlet/doubletsingletsinglet
Overlap geneLOC665526
Upstream geneDok6, LOC383320, LOC620693, Eif3s6-ps2
Downstream geneTxndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055B12.bB6Ng01-055B12.g
ACCDH877652DH877653
length160939
definitionDH877652|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B12, 5' end.DH877653|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,554,466 - 90,554,573)(41,059,524 - 41,059,737)
sequence
caaatcaggaaagcaggagtgggtgggttggtgagcagggggaggaggga
tgttatagtggacttttggagtggaaatgaggaaaagggataacatttga
aatgtaaataaagaaaatatctaataaaaaatcagtagtcctcggattta
tatatgttaa
gaattctttgtttagctctgtaccccattttttccacagggttatttgat
tttctggagtccagcttcttaagttctttgaatattttagattttgtccc
tctattggtcatagggttggaaaagatcttttcccaatttgtgggttgct
gttttgtcccattgatagtattctttgctttacagatggttttcttttct
tttctttctttctttcttttctttcttttttttcttttcttttctgtttg
tttttgtttttttttttctttttttttattgttcttttgagacaggcttt
ttctgtgtagccctggctgtcctggaatatactctgtagaccaggctggc
ctcgaactcagaaattctcttgcctctgcctcccaagtgctgggattaaa
ggcaggagccaccacacctggctttacaggagcttttcaatttcatgagg
tcccatttgtcgattgttgctcttaaagcacaagcaattagtgttttgtt
caggatgttttccctgtgccaaagaattcaaggctcttcttaaatatctc
ttctgcttgcttcagtttatctggttttatgtgaaaaactttgatcctct
tagacttgatctttgtggaaggagataggtatggatcaatttgcattctt
ctacatatagacctctagtgaaaccagcactttttgttgaaaatgctgac
ttttttccattgaataggtttagattctttgtcaaagatcaaaagaccac
atgtgtataggttcatttctgggtcttcaattctaatccatcgatctact
tgcctgtttctgtacaaatactatgcagtttttgtcacttttgttctata
gtacaatttgaggtcagggatgatgattgctcccgaagtgttattttatt
gttgagaatagtcctaggatattgttattccaaatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_90554466_90554573
seq2: B6Ng01-055B12.b_76_183 (reverse)

seq1  TTTTTATTAGGTATTTTCTTTATTTACATTTCAAATGCTATGCCCTTTCC  50
      |||||||||| |||||||||||||||||||||||||| ||| || |||||
seq2  TTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCTTTTCC  50

seq1  TGGTTTGCCTTTCAAAA-ACCCCTAGCCCCTCCCTGCCTCCCCCTGCACA  99
      |  ||| |  | |||||  || |||   | ||||| ||||||||||| ||
seq2  TCATTTCCACTCCAAAAGTCCACTATAACATCCCT-CCTCCCCCTGCTCA  99

seq1  ACAACCCAC  108
       ||||||||
seq2  CCAACCCAC  108

seq1: chr3_41059524_41059737
seq2: B6Ng01-055B12.g_68_527 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GACAAATGGGACCTCATGAAATTGAAAAGCTCCTGTAAAGCCAGGTGTGG  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGGCTCCTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGAGAATTT  100

seq1  --------------------------------------------------  0
                                                        
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTATATTCCAGGACAGCCAGG  150

seq1  --------------------------------------------------  0
                                                        
seq2  GCTACACAGAAAAAGCCTGTCTCAAAAGAACAATAAAAAAAAAGAAAAAA  200

seq1  ---------------------------------------------GACAA  5
                                                   || | 
seq2  AAAAACAAAAACAAACAGAAAAGAAAAGAAAAAAAAGAAAGAAAAGAAAG  250

seq1  ATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCA  55
      |  | |    | ||||  | ||| | |||| || |||||  | ||  |||
seq2  AAAGAAAGAAAAGAAA-AGAAAACCATCTGTAAAGCAAAGAATACTATCA  299

seq1  ATAAGACAAAA-AGGCACCAACAGATTGGGAAAGGATCTTTACCTATCCT  104
      ||  ||||||| ||  ||| ||| ||||||||| ||||||| || | |||
seq2  ATGGGACAAAACAGCAACCCACAAATTGGGAAAAGATCTTTTCCAACCCT  349

seq1  AAATCAGATAG-GGGACTAATATCCAATATATATCAAGAACTCAAGAAGG  153
      |   |  |||| ||||| || ||| || ||||   ||||||| |||||| 
seq2  ATGACCAATAGAGGGAC-AAAATCTAAAATATTCAAAGAACTTAAGAAGC  398

seq1  TGGATTCCAGAAAATCAAATAACCCCAT-TAAAAAATGGGGCTCAGAGCT  202
      |||| ||||||||||||||||||||  |  |||||||||||  |||||||
seq2  TGGACTCCAGAAAATCAAATAACCCTGTGGAAAAAATGGGGTACAGAGCT  448

seq1  AAACAAAGAATT  214
      ||||||||||||
seq2  AAACAAAGAATT  460