BAC Information

Click to search

BAC

Clone NameB6Ng01-055E06
Chromosome18 (Build37)
Map Location 27,361,478 - 27,498,657
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055E06.bB6Ng01-055E06.g
ACCDH877767DH877768
length1,148995
definitionDH877767|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E06, 5' end.DH877768|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,497,492 - 27,498,657)(27,361,478 - 27,362,477)
sequence
gaattcaaaataagcacgtatgcatgtgtccaagaattcagtagaaaata
tagacaaagttccaatgagacaaatgtctacaaaaaagagcaattgtgag
tatatttaaaagaaaagcaggaaatcaaatctctctctctctcttcccac
tcctctgtctgtctgtctcacatacacaaacacacacacacacacacaca
cacacacacacacacacacaaacacacacacacctatagatttattattt
ctatgtttagaaacactaaaggcaaatattatactctgaagtgaaatgcc
ctgcatagaattctttacatagagaatagtgtgagacaaatcatagaata
ccttgtaacgagaaaggtagcacaaatacttttgtattaataaaagttgc
tttttaatattttcacacatgtatagagtgtattctaggagtaggaggta
tctcccactggtaaaagccaaacactgttcttgtataagtgctagtttct
gtgctcagaaaccacatggtgttttgcaactttctctgaccccaggccag
gctgatctgaaagcttcttttgtttccatgggtactagatgaattaggta
tgtatacatacatggaggtaaacattcaaacacgtgaaaaaaataaaatt
ttattctaattacaacccatactctccccatacatttcatacatttccca
catttgtatgtttattttgttttttgccccctgaccctgactagggcctt
ctatatgattatgggcttgaaattgtacaactgagcattatgggatcatc
agtaggtacaaaactaagacaaagtatatttttattggaaaaataaagat
acctccttagataccaatcaacatacattacagtaagccagttttatgaa
aaattaacctctttattttcctaactttattcaaaccaaggacaaatata
actttaatttaataaaacaatgtattaaataactttagcacactgataaa
aacaaatgacaataatatcataataggagagagagatagttttaatattt
tactgcatacagaatactatgttgaaattagtattttaaattgatattgt
tcacctatgaacactgtacggtgcatattttcaaatgtaagcctatgc
gaattctatctggaaactcttcagaacttcggaacttactccttgacaat
caaatgtaacttcaatgatgctgaagaatgacttgagaagccctaactaa
aacaacaaattatccttgtgcctaaatttgttacctttgagaacatattc
atgattcagaagagacctgtttatttattttttcattattattgtctctt
ctcacgctgtttgtttctatgcttgtttgtttccttgtttgtttgtttct
ttgtttgtacaacctgtgcaactattacctgtactccattttctcataca
gggaggtgttttgcaggctcatcatgctcagatacagagaatgattctca
gacttcagaggcaaattagtctgatataacctattcctcaaagggaaaga
aaagcttttgatattcccattgctatatttctagttcacactcaataatc
cactggtttgaggaaacataaaaagcatatcttcaaatatatggtgtgct
atgaaattaacaccattttcctctagttgtttacaaaaagttgtttttca
atacattctgtaatagaatgagaagatgtcttaaattttggaaccaacaa
tcccttctgtggtcaatgacttcgtcatgagcccagagagttgttgtaaa
caagctctttcctcaatccagagagagaaacatcttttaagagtccaagg
aatattacatccatgaaatgaactatagagaactggaaaaaaaaacaaga
gtttatggaactgtaggattgtttttactctaaggaattaaactcccctt
cttcttaaggcatattagagagaatacattgggaagaggcatgtgtaaga
agtgaggtagccaagagagtccataaggacaaacactaatatctgactgg
gaagatgggaagacatgggagtaggtttgcaagtatcacctaaattcaat
ttacaggtccattcatataatagagtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27497492_27498657
seq2: B6Ng01-055E06.b_48_1195 (reverse)

seq1  GCATAGGCTTTACACTTCTGGAAAATAATGCACTGTTACAGTGGTTTCAT  50
      |||||||| ||||| ||   |||||| |||||| | |||||||  |||||
seq2  GCATAGGC-TTACATTT---GAAAAT-ATGCACCG-TACAGTG--TTCAT  42

seq1  AGGTTGACAATATACATTTAAAAATACTAATTTCAACTATTAGTATTCTG  100
      ||||  ||||||| || || |||||||||||||||||   ||||||||||
seq2  AGGTGAACAATAT-CAATTTAAAATACTAATTTCAAC--ATAGTATTCTG  89

seq1  TATTGCAGTATAAATATTTAAACTATCCTTCTCTCTCCTATTATGATATT  150
      || ||||||| ||||||| ||||||||  |||||||||||||||||||||
seq2  TA-TGCAGTA-AAATATTAAAACTATC--TCTCTCTCCTATTATGATATT  135

seq1  ATTGTCATTTGTATTTTTATCAGTGTGCTAGAGTTATTTAATACATTGTT  200
      |||||||||||  ||||||||||||||||| ||||||||||||||||| |
seq2  ATTGTCATTTG--TTTTTATCAGTGTGCTAAAGTTATTTAATACATTG-T  182

seq1  TTTATTAAATTAAAGTTATATTTGTCCTTGGTTTGAATAAAGTTAAGGAA  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATTAAATTAAAGTTATATTTGTCCTTGGTTTGAATAAAGTT-AGGAA  231

seq1  AATAAAGAGGTTAATTTTTCATAAAACTGGCTTACTGTAATGTATGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGGTTAATTTTTCATAAAACTGGCTTACTGTAATGTATGTTGA  281

seq1  TTGGTATCTAAGGAGGTATCTTTATTTTTCCAAT-AAAATATACTTTGTC  349
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGGTATCTAAGGAGGTATCTTTATTTTTCCAATAAAAATATACTTTGTC  331

seq1  TTAGTTTTGTACCTACTGATGATCCCATAATGCTCAGTTGTACAATTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGTACCTACTGATGATCCCATAATGCTCAGTTGTACAATTTCA  381

seq1  AGCCCATAATCATATAGAAGGCCCTAGTCAGGGTCAGGGGGCAAAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATAATCATATAGAAGGCCCTAGTCAGGGTCAGGGGGCAAAAAACA  431

seq1  AAATAAACATACAAATGTGGGAAATGTATGAAATGTATGGGGAGAGTATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACATACAAATGTGGGAAATGTATGAAATGTATGGGGAGAGTATG  481

seq1  GGTTGTAATTAGAATAAAATTTTATTTTTTTCACGTGTTTGAATGTTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAATTAGAATAAAATTTTATTTTTTTCACGTGTTTGAATGTTTAC  531

seq1  CTCCATGTATGTATACATACCTAATTCATCTAGTACCCATGGAAACAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTATGTATACATACCTAATTCATCTAGTACCCATGGAAACAAAA  581

seq1  GAAGCTTTCAGATCAGCCTGGCCTGGGGTCAGAGAAAGTTGCAAAACACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTCAGATCAGCCTGGCCTGGGGTCAGAGAAAGTTGCAAAACACC  631

seq1  ATGTGGTTTCTGAGCACAGAAACTAGCACTTATACAAGAACAGTGTTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTTCTGAGCACAGAAACTAGCACTTATACAAGAACAGTGTTTGG  681

seq1  CTTTTACCAGTGGGAGATACCTCCTACTCCTAGAATACACTCTATACATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCAGTGGGAGATACCTCCTACTCCTAGAATACACTCTATACATG  731

seq1  TGTGAAAATATTAAAAAGCAACTTTTATTAATACAAAAGTATTTGTGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATATTAAAAAGCAACTTTTATTAATACAAAAGTATTTGTGCTA  781

seq1  CCTTTCTCGTTACAAGGTATTCTATGATTTGTCTCACACTATTCTCTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCGTTACAAGGTATTCTATGATTTGTCTCACACTATTCTCTATG  831

seq1  TAAAGAATTCTATGCAGGGCATTTCACTTCAGAGTATAATATTTGCCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTCTATGCAGGGCATTTCACTTCAGAGTATAATATTTGCCTTT  881

seq1  AGTGTTTCTAAACATAGAAATAATAAATCTATAGGTGTGTGTGTGTTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTAAACATAGAAATAATAAATCTATAGGTGTGTGTGTGTTTGT  931

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATGTGA  981

seq1  GACAGACAGACAGAGGAGTGGGAAGAGAGAGAGAGAGATTTGATTTCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGAGGAGTGGGAAGAGAGAGAGAGAGATTTGATTTCCTG  1031

seq1  CTTTTCTTTTAAATATACTCACAATTGCTCTTTTTTGTAGACATTTGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTAAATATACTCACAATTGCTCTTTTTTGTAGACATTTGTCT  1081

seq1  CATTGGAACTTTGTCTATATTTTCTACTGAATTCTTGGACACATGCATAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAACTTTGTCTATATTTTCTACTGAATTCTTGGACACATGCATAC  1131

seq1  GTGCTTATTTTGAATTC  1166
      |||||||||||||||||
seq2  GTGCTTATTTTGAATTC  1148

seq1: chr18_27361478_27362477
seq2: B6Ng01-055E06.g_66_1060

seq1  GAATTCTATCTGGAAACTCTTCAGAACTTCGGAACTTACTCCTTGACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTGGAAACTCTTCAGAACTTCGGAACTTACTCCTTGACAAT  50

seq1  CAAATGTAACTTCAATGATGCTGAAGAATGACTTGAGAAGCCCTAACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAACTTCAATGATGCTGAAGAATGACTTGAGAAGCCCTAACTAA  100

seq1  AACAACAAATTATCCTTGTGCCTAAATTTGTTACCTTTGAGAACATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAATTATCCTTGTGCCTAAATTTGTTACCTTTGAGAACATATTC  150

seq1  ATGATTCAGAAGAGACCTGTTTATTTATTTTTTCATTATTATTGTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCAGAAGAGACCTGTTTATTTATTTTTTCATTATTATTGTCTCTT  200

seq1  CTCACGCTGTTTGTTTCTATGCTTGTTTGTTTCCTTGTTTGTTTGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTGTTTGTTTCTATGCTTGTTTGTTTCCTTGTTTGTTTGTTTCT  250

seq1  TTGTTTGTACAACCTGTGCAACTATTACCTGTACTCCATTTTCTCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTACAACCTGTGCAACTATTACCTGTACTCCATTTTCTCATACA  300

seq1  GGGAGGTGTTTTGCAGGCTCATCATGCTCAGATACAGAGAATGATTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGTTTTGCAGGCTCATCATGCTCAGATACAGAGAATGATTCTCA  350

seq1  GACTTCAGAGGCAAATTAGTCTGATATAACCTATTCCTCAAAGGGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGAGGCAAATTAGTCTGATATAACCTATTCCTCAAAGGGAAAGA  400

seq1  AAAGCTTTTGATATTCCCATTGCTATATTTCTAGTTCACACTCAATAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTGATATTCCCATTGCTATATTTCTAGTTCACACTCAATAATC  450

seq1  CACTGGTTTGAGGAAACATAAAAAGCATATCTTCAAATATATGGTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTTGAGGAAACATAAAAAGCATATCTTCAAATATATGGTGTGCT  500

seq1  ATGAAATTAACACCATTTTCCTCTAGTTGTTTACAAAAAGTTGTTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAACACCATTTTCCTCTAGTTGTTTACAAAAAGTTGTTTTTCA  550

seq1  ATACATTCTGTAATAGAATGAGAAGATGTCTTAAATTTTGGAACCAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCTGTAATAGAATGAGAAGATGTCTTAAATTTTGGAACCAACAA  600

seq1  TCCCTTCTGTGGTCAATGACTTCGTCATGAGCCCAGAGAGTTGTTGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTGTGGTCAATGACTTCGTCATGAGCCCAGAGAGTTGTTGTAAA  650

seq1  CAAGCTCTTTCCTCAATCCAGAGAGAGAAACATCTTTTAAGAGTCCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTTTCCTCAATCCAGAGAGAGAAACATCTTTTAAGAGTCCAAGG  700

seq1  AATATTACATCCATGAAATGAACTATAGAGAACTGGAAAAAAAAACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACATCCATGAAATGAACTATAGAGAACTGGAAAAAAAAACAAGA  750

seq1  GTTTATGGAACTGTAGGATTGTTTTTACTCTAAGGAATTAAACTCCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGAACTGTAGGATTGTTTTTACTCTAAGGAATTAAACTCCCCTT  800

seq1  CTTCTTAAGGCATATTAGAGAGAATACATTGGGAAGAGGCATGTGTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAGGCATATTAGAGAGAATACATTGGGAAGAGGCATGTGTAAGA  850

seq1  AGTGAGGTAGCCAAGAGAGTCCATAAGGACAAACACTAATATCTGACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTAGCCAAGAGAGTCCATAAGGACAAACACTAATATCTGACTGG  900

seq1  GAAGATGGGAAGACATGGGAGTTAGGTTTTGCAAGTATCACCTAAATTCA  950
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  GAAGATGGGAAGACATGGGAG-TAGG-TTTGCAAGTATCACCTAAATTCA  948

seq1  ATTTACAGGTCCAATTCATAATAATAGATGTGTGTGTGTGTGTGTGTGTG  1000
      |||||||||||| |||||| |||||||| |||||||||||||||||||||
seq2  ATTTACAGGTCC-ATTCAT-ATAATAGA-GTGTGTGTGTGTGTGTGTGTG  995