BAC Information

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BAC

Clone NameB6Ng01-056B19
Chromosome18 (Build37)
Map Location 44,652,189 - 44,811,324
singlet/doubletdoublet
Overlap genenone
Upstream geneJakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B19.bB6Ng01-056B19.g
ACCDH878374DH878375
length1,118859
definitionDH878374|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B19, 5' end.DH878375|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,810,212 - 44,811,324)(44,652,189 - 44,653,050)
sequence
gaattctttatatatttaaggtatcagctacttttgttccatgtcttagt
ttgtctgcactggtctttgtacaatgctttggtatttcccgatgcagtca
cagtgaatatagaacgaggcttgcaagggaatcacttctctatataaaat
aaacagctctgtgtgcttatccacaagggacttcgaggtcctctggagtg
attgagcgccatgcatctgggggcaaaggtacctttcacagatggacagt
cagcagttctgtttggaaagagcaatctctagttatatgaggcaaacaca
gagttacgatttctgaccaggacatggggagagttgtgttttcccacctc
atactgctagagaggaattccaggagaactttagcaagaggggcctgtgg
agagtagccaggaagttggatgctggtctgttagattagataaaggttag
ttttaatttcttggtgctcagagtctaatcctggctaaaccaaaatcaaa
tttatttccacgcttggtagggagcaccctgattaagtgtttggctgagg
acacagcagaacaggagggttcaggatggctatgcctttgctggttatta
aacacccccccacacacacacacacacaaccccagtgaggaggaaaaggg
ggtgaattggaatctggtcaggaagattcattcccaacatggagtgggtc
catttaaaagtcagatttgggattcattctttatctttcaccctttttat
atatcttaaaccaatctctctctctctctgtccctgccctctctctctcc
ctctctctctctccctgtctctccatctcttcttctccttctctcccttt
cctcccccactcttcccttctctccctctcttcctctctctctccctttc
tctttccctccccctctctctttctctcagtctccttcttcccttctcta
tccctccctccctccctccctcttcccctctctgtccctctcttctccca
atatcttcccctggatgaattagaaagcatcttcattcggggccttgaag
acactaagaaaatgctttctggacctgctgtgttaatacctgtgggagga
aaatgtctctggctgata
gaattcttcccgacagaccagactgtgcctttgcataagttcctataaga
cctggaagtataagttgcaaggtccagggcactaagccacagtgaagcaa
tagaaatacacccaaggccaggatcaagaaggacttgacgtccctattat
tcggaaagaggcgagggtgggcacatgccattcctctcactccatatttt
ctcagaagtaaaagaaaaaaggtgtggctgagacccagatatactggcta
gggatggggtgactcagctagacccctatccattccttctttggacagca
cagactgctggctcataaagttggattctagaaatcttaactctgtaaga
aagcctctaaggtcaacttgcaacataagaatacgatgatggctggccac
agagacatacatctttaatccggcacttgggaggcagaggcagatggatt
tctatgaatccgaggtcatttttgtttacagttccaggccagctagggct
acatgttgaaatctaatctcaaaaagaaaaggggaaaaaaatactgaggt
gggcgacaccaaaatgatgtggtttaatgctacaaatgtaacgattccca
agtaaaagcatccttttttggtgcaaagccagtgtgtgacattgttgata
tgcctccctgccccccccccccggaagtaatttagctcaagaaatatgta
tagggatcctgcttctagctaatggcgcaatatatttgtatggttttcat
ggctaataggtattcaggaagccttatgtcaaaaaggagcttgccctctc
ccttgggcctccctcagaaagttcgcagagagaagcaggccctcttaatg
ggcaagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44810212_44811324
seq2: B6Ng01-056B19.b_48_1165 (reverse)

seq1  TATCAGCACGAGACATTTTCCT-CCACA-GTAATTACACA-CAGGTCCAG  47
      |||||||  ||||||||||||| ||||| ||| | ||||| |||||||||
seq2  TATCAGCCAGAGACATTTTCCTCCCACAGGTATTAACACAGCAGGTCCAG  50

seq1  AAAGCATTTTCTTAGTGTCTCAAGGGCCCCGAATG-AGATGCTGTCTAAC  96
      ||||||||||||||||||||  | ||||||||||| ||||||| ||||| 
seq2  AAAGCATTTTCTTAGTGTCTTCAAGGCCCCGAATGAAGATGCTTTCTAAT  100

seq1  TCATCCAGGGG-AGATATGGGGAGAAGGAGAGGGACAGAGAGGGGGAAGA  145
      ||||||||||| |||||| ||||||| |||||||||||||| ||||||||
seq2  TCATCCAGGGGAAGATATTGGGAGAA-GAGAGGGACAGAGA-GGGGAAGA  148

seq1  GGGAGGGAGGGAGGGAGGGATAGAGAAGGGAAGGAAGGAGACTGAGAGAA  195
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGAGGGAGGGAGGGAGGGATAGAGAAGGGAA-GAAGGAGACTGAGAGAA  197

seq1  AGAGAGAGGGGGAGGGAAAGAGAAAGGGAGAGAGAGAGGAAGAGAGGGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGGGAGGGAAAGAGAAAGGGAGAGAGAGAGGAAGAGAGGGAG  247

seq1  AGAAGGGAAGAGTGGGGGAGG-AAGGGAGAGAAGGAGAAGAAGAGATGGA  294
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAGGGAAGAGTGGGGGAGGAAAGGGAGAGAAGGAGAAGAAGAGATGGA  297

seq1  GAGACAGGGAGAGAGAGAGAGGGAGAGAGAGAGGGCAGGGACAGAGAGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGAGAGAGAGAGAGGGAGAGAGAGAGGGCAGGGACAGAGAGAG  347

seq1  AGAGAGATTGG-TTAAGATATAT-AAAAGGGTGAAAGATAAAGAATGAAT  392
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGAGAGATTGGTTTAAGATATATAAAAAGGGTGAAAGATAAAGAATGAAT  397

seq1  CCCAAATCTGACTTTTAAATGGACCCACTCCATGTTGGGAATGAATCTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCTGACTTTTAAATGGACCCACTCCATGTTGGGAATGAATCTTC  447

seq1  CTGACCAGATTCCAATTCACCCCCTTTTCCTCCTCACTGGGGTTGTGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGATTCCAATTCACCCCCTTTTCCTCCTCACTGGGGTTGTGTGT  497

seq1  GTGTGTGTGTGGGGGGGTGTTTAATAACCAGCAAAGGCATAGCCATCCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGGGGGGTGTTTAATAACCAGCAAAGGCATAGCCATCCTG  547

seq1  AACCCTCCTGTTCTGCTGTGTCCTCAGCCAAACACTTAATCAGGGTGCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTGTTCTGCTGTGTCCTCAGCCAAACACTTAATCAGGGTGCTC  597

seq1  CCTACCAAGCGTGGAAATAAATTTGATTTTGGTTTAGCCAGGATTAGACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAAGCGTGGAAATAAATTTGATTTTGGTTTAGCCAGGATTAGACT  647

seq1  CTGAGCACCAAGAAATTAAAACTAACCTTTATCTAATCTAACAGACCAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACCAAGAAATTAAAACTAACCTTTATCTAATCTAACAGACCAGC  697

seq1  ATCCAACTTCCTGGCTACTCTCCACAGGCCCCTCTTGCTAAAGTTCTCCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACTTCCTGGCTACTCTCCACAGGCCCCTCTTGCTAAAGTTCTCCT  747

seq1  GGAATTCCTCTCTAGCAGTATGAGGTGGGAAAACACAACTCTCCCCATGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTCTCTAGCAGTATGAGGTGGGAAAACACAACTCTCCCCATGT  797

seq1  CCTGGTCAGAAATCGTAACTCTGTGTTTGCCTCATATAACTAGAGATTGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAGAAATCGTAACTCTGTGTTTGCCTCATATAACTAGAGATTGC  847

seq1  TCTTTCCAAACAGAACTGCTGACTGTCCATCTGTGAAAGGTACCTTTGCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAAACAGAACTGCTGACTGTCCATCTGTGAAAGGTACCTTTGCC  897

seq1  CCCAGATGCATGGCGCTCAATCACTCCAGAGGACCTCGAAGTCCCTTGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCATGGCGCTCAATCACTCCAGAGGACCTCGAAGTCCCTTGTG  947

seq1  GATAAGCACACAGAGCTGTTTATTTTATATAGAGAAGTGATTCCCTTGCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCACACAGAGCTGTTTATTTTATATAGAGAAGTGATTCCCTTGCA  997

seq1  AGCCTCGTTCTATATTCACTGTGACTGCATCGGGAAATACCAAAGCATTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGTTCTATATTCACTGTGACTGCATCGGGAAATACCAAAGCATTG  1047

seq1  TACAAAGACCAGTGCAGACAAACTAAGACATGGAACAAAAGTAGCTGATA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGACCAGTGCAGACAAACTAAGACATGGAACAAAAGTAGCTGATA  1097

seq1  CCTTAAATATATAAAGAATTC  1113
      |||||||||||||||||||||
seq2  CCTTAAATATATAAAGAATTC  1118

seq1: chr18_44652189_44653050
seq2: B6Ng01-056B19.g_70_927

seq1  GAATTCTTCCCGACAGACCAGACTGTGCCTTTGCATAAGTTCCTATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCGACAGACCAGACTGTGCCTTTGCATAAGTTCCTATAAGA  50

seq1  CCTGGAAGTATAAGTTGCAAGGTCCAGGGCACTAAGCCACAGTGAAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTATAAGTTGCAAGGTCCAGGGCACTAAGCCACAGTGAAGCAA  100

seq1  TAGAAATACACCCAAGGCCAGGATCAAGAAGGACTTGACGTCCCTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACACCCAAGGCCAGGATCAAGAAGGACTTGACGTCCCTATTAT  150

seq1  TCGGAAAGAGGCGAGGGTGGGCACATGCCATTCCTCTCACTCCATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAAGAGGCGAGGGTGGGCACATGCCATTCCTCTCACTCCATATTTT  200

seq1  CTCAGAAGTAAAAGAAAAAAGGTGTGGCTGAGACCCAGATATACTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGTAAAAGAAAAAAGGTGTGGCTGAGACCCAGATATACTGGCTA  250

seq1  GGGATGGGGTGACTCAGCTAGACCCCTATCCATTCCTTCTTTGGACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGGTGACTCAGCTAGACCCCTATCCATTCCTTCTTTGGACAGCA  300

seq1  CAGACTGCTGGCTCATAAAGTTGGATTCTAGAAATCTTAACTCTGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCTGGCTCATAAAGTTGGATTCTAGAAATCTTAACTCTGTAAGA  350

seq1  AAGCCTCTAAGGTCAACTTGCAACATAAGAATACGATGATGGCTGGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTAAGGTCAACTTGCAACATAAGAATACGATGATGGCTGGCCAC  400

seq1  AGAGACATACATCTTTAATCCGGCACTTGGGAGGCAGAGGCAGATGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATACATCTTTAATCCGGCACTTGGGAGGCAGAGGCAGATGGATT  450

seq1  TCTATGAATCCGAGGTCATTTTTGTTTACAGTTCCAGGCCAGCTAGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAATCCGAGGTCATTTTTGTTTACAGTTCCAGGCCAGCTAGGGCT  500

seq1  ACATGTTGAAATCTAATCTCAAAAAGAAAAGGGGAAAAAAATACTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGAAATCTAATCTCAAAAAGAAAAGGGGAAAAAAATACTGAGGT  550

seq1  GGGCGACACCAAAATGATGTGGTTTAATGCTACAAATGTAACGATTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACACCAAAATGATGTGGTTTAATGCTACAAATGTAACGATTCCCA  600

seq1  AGT-AAAGCATCCTTTTTTGGTGCAAAGCCAGTGTGTGACATTGTTGATA  649
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGCATCCTTTTTTGGTGCAAAGCCAGTGTGTGACATTGTTGATA  650

seq1  TGCCTCCCTGCCCCCCCCCCCCGGAAGTAATTTAGCTCAAGAAATATGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCTGCCCCCCCCCCCCGGAAGTAATTTAGCTCAAGAAATATGTA  700

seq1  TAGGGATCCTGCTTCTAGCTAATGGCGCAATATATTTGTATGGTTTTCAA  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGGGATCCTGCTTCTAGCTAATGGCGCAATATATTTGTATGGTTTTC-A  749

seq1  TGGCTAATAGGTATTCAGGAAAGCCTTATGTCAAAAAAGGAGCTTGCCCT  799
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  TGGCTAATAGGTATTCAGG-AAGCCTTATGTC-AAAAAGGAGCTTGCCCT  797

seq1  CTCCCTTGGCCTCCCCTCAGAAAGCTACGCAGAGAGAAGCAGGCCCACCT  849
      ||||||||| |  ||||||||||| | |||||||||||||||||||  ||
seq2  CTCCCTTGGGCCTCCCTCAGAAAG-TTCGCAGAGAGAAGCAGGCCC-TCT  845

seq1  TAATGGCCAAGTC  862
      |||||| ||||||
seq2  TAATGGGCAAGTC  858