BAC Information

Click to search

BAC

Clone NameB6Ng01-060L02
Chromosome18 (Build37)
Map Location 70,508,848 - 70,663,490
singlet/doubletdoublet
Overlap gene4930503L19Rik, Stard6
Upstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik
Downstream genePoli, Mbd2, EG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060L02.bB6Ng01-060L02.g
ACCDH881595DH881596
length1,151970
definitionDH881595|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L02, 5' end.DH881596|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,508,848 - 70,510,021)(70,662,937 - 70,663,490)
sequence
gaattccaaatgaaagaaggaggctgtaaattatgtgtagacctgatgtt
ggtaaagcaaagaatcgtgttcgcactccaagtttcaagagatcctccag
atatattgcctttattttggtgcggtacagagtgggctccttacctctgg
gaaatgatgtttgtgatgtttaaaagttactacatcagtgattcgattct
tgccagagtagccacagaaaactaatatatccaccctctgctctgcactt
tccattagctctgcttctagaacctcccaggacatcgctctttcttaaaa
cttgccaattaatcaataaatagtcattttatgattatttatatgagatc
tactattccatcgatcatgagaatgttcaccaagattgaaatctcgtagt
tttcatcatgtctccaggccctcccacaaggcagatggttacttagtgtc
tattgaataaccacatgaaaaaattttccacaccgtcaatatattttata
ttaaaaaaataatctgcagttcagaattgttcaataatctgcttaaggca
cacaacaatgccattgcagcttgagacctcaaacaccagtttgtcttgtc
ttacccagaccttccctcaggaacagtggttgagccagtcctgacccaat
tcttagcatacctccacttctgtgaataggtcacttggcagtcactccct
ctctgagaatagcattgtccttgatagcttgtttttaaaggcaatcaccc
aatatcttcagaattgactgagatccattgactagaacatctaagctggt
accaaaatcagcatttattcacaacacaaaaataagacacaaaatgcaga
caaataaaattcttagcatttttataagtttgaccttaaagaaaaaggta
aatatcgggagttattattattattatttaatttactggataggggttga
ttatccaaagggtatagtacagcccaataccacctttcctcatgtgacgc
tatgaatactcacatgcatgcgtgcccgtatcccactagagtctgctaac
cctcgtgtcagctggttcagaggacagggtgcattagcacttccatgaat
ctccgcctgcatttccataaaacaccgaagcgaggctggtgagtggagct
c
gaattcactttacattctgctcactgccctgctcctggtaacccctccca
aagtccctcccccatttccccccccttctctgaacgaatgggtggcccgt
gggcatctccccaccctggcacatcaagtctttgctaggctaggtgcatc
ctctccactgaagccagacagggcagcccggctagaacatatcccacaga
taggcaacagcttttgcgatagtccctgctccgggtgttggggacccaag
tgaagaccaagccacccagcagctgacttggacagatgcagagaccaacg
gcaaaacagtggatgaagcttggggactcttacggaagaatagaaggaag
gattgcaggccaaagagtatccttgtcagcgcgaccaacagagtcaacta
acctgcacccttggggccctcagagactgaaccaccaaccgaagagcatc
cacgggctggaccttggcttgtttcttttaagagctctgctttccccagc
ttacagtgtcatttatttttcttaatttttctatacccctcacttaagtc
ctcccagatcctccccacccatccttaaactgcaagttttcattccatgt
gggtcacatgactgaaattgggtggagtcactgatttggcaacagtaaga
agtttctggatgtgtaagcacacacacacacacacacacacacacacaca
ctcacacacacacacacacacacacacacacagacacacacacacacaca
caaagtcagccatgaaaagcatcactgactgtgtggcttgtgttgaatag
agggctcatctactacacgtggctctgaatacaataggagcatcctgttt
tcctcactcagctctgcttttattccattgtgctcaaaaaaacaaggact
aactcacttttccctatatgttaagatttgctctatgtctgtgtgtgtga
aagagaggggggaagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70508848_70510021
seq2: B6Ng01-060L02.b_46_1196

seq1  GAATTCCAAATGAAAGAAGGAGGCTGTAAATTATGTGTAGACCTGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGAAAGAAGGAGGCTGTAAATTATGTGTAGACCTGATGTT  50

seq1  GGTAAAGCAAAGAATCGTGTTCGCACTCCAAGTTTCAAGAGATCCTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCAAAGAATCGTGTTCGCACTCCAAGTTTCAAGAGATCCTCCAG  100

seq1  ATATATTGCCTTTATTTTGGTGCGGTACAGAGTGGGCTCCTTACCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGCCTTTATTTTGGTGCGGTACAGAGTGGGCTCCTTACCTCTGG  150

seq1  GAAATGATGTTTGTGATGTTTAAAAGTTACTACATCAGTGATTCGATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATGTTTGTGATGTTTAAAAGTTACTACATCAGTGATTCGATTCT  200

seq1  TGCCAGAGTAGCCACAGAAAACTAATATATCCACCCTCTGCTCTGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGTAGCCACAGAAAACTAATATATCCACCCTCTGCTCTGCACTT  250

seq1  TCCATTAGCTCTGCTTCTAGAACCTCCCAGGACATCGCTCTTTCTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGCTCTGCTTCTAGAACCTCCCAGGACATCGCTCTTTCTTAAAA  300

seq1  CTTGCCAATTAATCAATAAATAGTCATTTTATGATTATTTATATGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAATTAATCAATAAATAGTCATTTTATGATTATTTATATGAGATC  350

seq1  TACTATTCCATCGATCATGAGAATGTTCACCAAGATTGAAATCTCGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCCATCGATCATGAGAATGTTCACCAAGATTGAAATCTCGTAGT  400

seq1  TTTCATCATGTCTCCAGGCCCTCCCACAAGGCAGATGGTTACTTAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATGTCTCCAGGCCCTCCCACAAGGCAGATGGTTACTTAGTGTC  450

seq1  TATTGAATAACCACATGAAAAAATTTTCCACACCGTCAATATATTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATAACCACATGAAAAAATTTTCCACACCGTCAATATATTTTATA  500

seq1  TTAAAAAAATAATCTGCAGTTCAGAATTGTTCAATAATCTGCTTAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATAATCTGCAGTTCAGAATTGTTCAATAATCTGCTTAAGGCA  550

seq1  CACAACAATGCCATTGCAGCTTGAGACCTCAAACACCAGTTTGTCTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAATGCCATTGCAGCTTGAGACCTCAAACACCAGTTTGTCTTGTC  600

seq1  TTACCCAGACCTTCCCTCAGGAACAGTGGTTGAGCCAGTCCTGACCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGACCTTCCCTCAGGAACAGTGGTTGAGCCAGTCCTGACCCAAT  650

seq1  TCTTAGCATACCTCCACTTCTGTGAATAGGTCACTTGGCAGTCACTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATACCTCCACTTCTGTGAATAGGTCACTTGGCAGTCACTCCCT  700

seq1  CTCTGAGAATAGCATTGTCCTTGATAGCTTGTTTTTAAAGGCAATCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAATAGCATTGTCCTTGATAGCTTGTTTTTAAAGGCAATCACCC  750

seq1  AATATCTTCAGAATTGACTGAGATCCATTGACTAGAACATCTAAGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCAGAATTGACTGAGATCCATTGACTAGAACATCTAAGCTGGT  800

seq1  ACCAAAATCAGCATTTATTCACAACACAAAAATAAGACACAAAATGCAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCAAAATCAGCATTTATTCACAACACAAAAATAAGACACAAAATGCA-G  849

seq1  ACAAATAAAATTCTTAGCATTTTTATAAGTTTGACCTTAAAGAAAAAAGG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAAATAAAATTCTTAGCATTTTTATAAGTTTGACCTTAAAG-AAAAAGG  898

seq1  TAAATATCGGGAGTTATTATTATTATTATTTTAATTTACTGGATAGGGGT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAATATCGGGAGTTATTATTATTATTA-TTTAATTTACTGGATAGGGGT  947

seq1  TGATTATCCAAAGGGTAATAAGTACAGCCCAATTACCACCTTTCCTCATT  1000
      |||||||||||||||||   |||||||||||| ||||||||||||||| |
seq2  TGATTATCCAAAGGGTA--TAGTACAGCCCAA-TACCACCTTTCCTCA-T  993

seq1  GTGACGCTATGAATACTCACATGCATGCGTGCCCGTATCCCACTAGAGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGCTATGAATACTCACATGCATGCGTGCCCGTATCCCACTAGAGTC  1043

seq1  TGCTAACCCTTCGGTGTCAGGCCTGGGTTCAGAGGACAGGGTGCCATAAG  1100
      ||||||||||   |||||||  || |||||||||||||||||| ||| ||
seq2  TGCTAACCCT--CGTGTCAG--CT-GGTTCAGAGGACAGGGTG-CATTAG  1087

seq1  CACTTTCTCATTGAATCCTCACGGCTGCATTCTCATAAAACACAGAAGCA  1150
      ||||   ||  ||||| ||| || |||||||  |||||||||| ||||| 
seq2  CACT---TCCATGAAT-CTC-CGCCTGCATTTCCATAAAACACCGAAGC-  1131

seq1  GAGGAGCTGGTGGAGTGTGAGCTC  1174
      |||  |||||| ||||| ||||||
seq2  GAG--GCTGGT-GAGTG-GAGCTC  1151

seq1: chr18_70662937_70663490
seq2: B6Ng01-060L02.g_483_1036 (reverse)

seq1  TCTCTCTCTCCCCCCTCTCTCTCACACACACAGACATAGAGCAAATCTTA  50
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  TCTCTCT-TCCCCCCTCTCTTTCACACACACAGACATAGAGCAAATCTTA  49

seq1  ACATATAGGG-AAAGTGAGTAAGTCCTTG-TTTTTTGAGCACAATGGAAT  98
      |||||||||| ||||||||| |||||||| ||||||||||||||||||||
seq2  ACATATAGGGAAAAGTGAGTTAGTCCTTGTTTTTTTGAGCACAATGGAAT  99

seq1  AAAAGCAGAGCTGAGTGAGGAAAACAGGATGCTCCTATTGTATTCAGAGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAGCTGAGTGAGGAAAACAGGATGCTCCTATTGTATTCAGAGC  149

seq1  CACGTGTAGTAGATGAGCCCTTCTATTCAACACAAGCCACACAGTCAGTG  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACGTGTAGTAGATGAGCCC-TCTATTCAACACAAGCCACACAGTCAGTG  198

seq1  ATGCTTTTCATGGCTGACTTTGTGTGTGTGTGTGTGTGTCTGTGTGTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCATGGCTGACTTTGTGTGTGTGTGTGTGTGTCTGTGTGTGTG  248

seq1  TGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  298

seq1  TGTGCTTACACATCCAGAAACTTCTTACTGTTGCCAAATCAGTGACTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTACACATCCAGAAACTTCTTACTGTTGCCAAATCAGTGACTCCA  348

seq1  CCCAATTTCAGTCATGTGACCCACATGGAATGAAAACTTGCAGTTTAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTCAGTCATGTGACCCACATGGAATGAAAACTTGCAGTTTAAGG  398

seq1  ATGGGTGGGGAGGATCTGGGAGGACTTAAGTGAGGGGTATAGAAAAATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGGGAGGATCTGGGAGGACTTAAGTGAGGGGTATAGAAAAATTA  448

seq1  AGAAAAATAAATGACACTGTAAGCTGGGGAAAGCAGAGCTCTTAAAAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAATGACACTGTAAGCTGGGGAAAGCAGAGCTCTTAAAAGAA  498

seq1  ACAAGCCAAGGTCCAGCCCGTGGATGCTCTTCGGTTGGTGGTTCAGTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAAGGTCCAGCCCGTGGATGCTCTTCGGTTGGTGGTTCAGTCTC  548

seq1  TGAGGG  554
      ||||||
seq2  TGAGGG  554