BAC Information

Click to search

BAC

Clone NameB6Ng01-061H20
Chromosome18 (Build37)
Map Location 31,433,583 - 31,434,727
singlet/doubletsinglet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061H20.bB6Ng01-061H20.g
ACCDH882152DH882153
length1,1331,233
definitionDH882152|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H20, 5' end.DH882153|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaaaaaggacagagattttaagaggaacatcacaggctttgat
ttattttggaaacaagctgcattattgcatggtgggtcctaaacttagta
tcttccaattaattcttagggttatttctgccaatttggaaatttattga
cttaacattatatttttaattccagtaaaatttgcttgtctccacagtga
gccaaccctctttgctatgttttttttttcctatctgtaggctatctatc
cagtcataccaccttgctatgcaaaattctctaatgcttaatttttttct
gatactttatttaaaaacttaaatgatatcgaggtagtggtggcacacac
ctttaatcccaccacttggaagatagagactggtgtatctctgtgagttc
aaggctatcctgatctacagagtgagttctaggacacccaatgttacaag
gggagaccttgttttagaaacaaacaaacaaacaaacaaaggaatgacaa
agcctcatgtcctcatctggacattggtgtgtctgtgacacaatacctta
ataaaacccccttctggggtagcctttctccaaatactcaggtctttcct
tttactttcttctgtccccttgcagagggcatccttgaagagcaattttc
ccttcatgagcctctcctgttttcatcataatgcttatagtctgttatat
gctgctatagaacatagctcatatgtttattctacatcacaaattcagtc
tgttgtaaaaggcaacagagttttctacagatactcaaatatataggctg
agtgagtaatcaaggggtaaaacacacctacaataagttatttttctaaa
aatagtacagaagacataacctgctttgaccttatgttttcttcactcag
actaatgaaaacgtaattttaaagtggtaattttgactccatcccataaa
acaccgagtctctgaatgctgaggattatgccaaatctcaatggccaaat
gttattggggtgaacaaaagcaacaggaaactgggaaaccacacttgttc
tctggtgcactgggtgactgtaacaagtaaaacagtaggagcaaaactca
cctcactgctcttgttcttaatgaaacatattt
gaattctcacctgaggaataccgaatggctgagaagcatctgaaaaaatg
ttcagcatccttaatcattagggatatgcaaatcaaaacaaccctgagat
tccccctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
gtattgcaagcttgtttaaccactctggaaatcagtctggaagttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatactccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgtaattcttaggcaa
atggatggacctggaggacatcatccttagtgaggtaacccaatcacaaa
agaactcacatgatatgtgctcactgataagtggatattagcccagaaac
ttagaatacccaagatacaagatacaatttgctaaactcatgaaactcaa
gaagaacgaagaccaaattgtggacactttgccctttctcagaattggga
acaaaacacccatggaaagagttaaagaggtaaagtttggagctgagacg
aaaggatggaccatatagagactgccatactcggggaaccatttcataat
cagcctccaaatgcagacaccgttgcatacactagcaagattttgctgaa
aggacccagatgtagctgtctcttgtgagactatgctggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacaggtcttct
agtggagagctagggaaagttccgaagtgttgtgagctgtcagtgacttc
acaggatggcaatacctgaataataagctgcgctgaagagagggaaacta
ggcgactagaggaaaatggaatcagacaatgttctgatcagttcaaattt
taatgggcgaccacttataaagatggggggggagtcattctccaagtctt
ctagcctggatcgacttcagggatagtgcgaaggctagtcagatgattca
ggtctctctgagtgaacattctgagagactgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31433583_31434727
seq2: B6Ng01-061H20.b_45_1177

seq1  GAATTCAGAAAAAGGACAGAGATTTTAAGAGGAACATCACAGGCTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAAGGACAGAGATTTTAAGAGGAACATCACAGGCTTTGAT  50

seq1  TTATTTTGGAAACAAGCTGCATTATTGCATGGTGGGTCCTAAACTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGAAACAAGCTGCATTATTGCATGGTGGGTCCTAAACTTAGTA  100

seq1  TCTTCCAATTAATTCTTAGGGTTATTTCTGCCAATTTGGAAATTTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAATTAATTCTTAGGGTTATTTCTGCCAATTTGGAAATTTATTGA  150

seq1  CTTAACATTATATTTTTAATTCCAGTAAAATTTGCTTGTCTCCACAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATTATATTTTTAATTCCAGTAAAATTTGCTTGTCTCCACAGTGA  200

seq1  GCCAACCCTCTTTGCTATGTTTTTTTTTTCCTATCTGTAGGCTATCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCTCTTTGCTATGTTTTTTTTTTCCTATCTGTAGGCTATCTATC  250

seq1  CAGTCATACCACCTTGCTATGCAAAATTCTCTAATGCTTAATTTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATACCACCTTGCTATGCAAAATTCTCTAATGCTTAATTTTTTTCT  300

seq1  GATACTTTATTTAAAAACTTAAATGATATCGAGGTAGTGGTGGCACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTATTTAAAAACTTAAATGATATCGAGGTAGTGGTGGCACACAC  350

seq1  CTTTAATCCCACCACTTGGAAGATAGAGACTGGTGTATCTCTGTGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCACCACTTGGAAGATAGAGACTGGTGTATCTCTGTGAGTTC  400

seq1  AAGGCTATCCTGATCTACAGAGTGAGTTCTAGGACACCCAATGTTACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATCCTGATCTACAGAGTGAGTTCTAGGACACCCAATGTTACAAG  450

seq1  GGGAGACCTTGTTTTAGAAACAAACAAACAAACAAACAAAGGAATGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCTTGTTTTAGAAACAAACAAACAAACAAACAAAGGAATGACAA  500

seq1  AGCCTCATGTCCTCATCTGGACATTGGTGTGTCTGTGACACAATACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATGTCCTCATCTGGACATTGGTGTGTCTGTGACACAATACCTTA  550

seq1  ATAAAACCCCCTTCTGGGGTAGCCTTTCTCCAAATACTCAGGTCTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCCCCTTCTGGGGTAGCCTTTCTCCAAATACTCAGGTCTTTCCT  600

seq1  TTTACTTTCTTCTGTCCCCTTGCAGAGGGCATCCTTGAAGAGCAATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCTTCTGTCCCCTTGCAGAGGGCATCCTTGAAGAGCAATTTTC  650

seq1  CCTTCATGAGCCTCTCCTGTTTTCATCATAATGCTTATAGTCTGTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGAGCCTCTCCTGTTTTCATCATAATGCTTATAGTCTGTTATAT  700

seq1  GCTGCTATAGAACATAGCTCATATGTTTATTCTACATCACAAATTCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATAGAACATAGCTCATATGTTTATTCTACATCACAAATTCAGTC  750

seq1  TGTTGTAAAAGGCAACAGAGTTTTCTACAGATACTCAAATATATAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAAAGGCAACAGAGTTTTCTACAGATACTCAAATATATAGGCTG  800

seq1  AGTGAGTAATCAAGGGGTAAAACACACCTACAATAAGTTATTTTTCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGAGTAATCAAGGGGTAAAACACACCTACAATAAGTTATTTTTCT-AA  849

seq1  AAATAGTACAGAAGACATAACCTGCTTTGACCTTATGTTTTCTTCACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTACAGAAGACATAACCTGCTTTGACCTTATGTTTTCTTCACTCA  899

seq1  GACTAATGAAAACGTAATTTTAAAGTGGTAATTTTGACTCCATCCCATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATGAAAACGTAATTTTAAAGTGGTAATTTTGACTCCATCCCATAA  949

seq1  AACACCGAGTCTCTGAATGCTGAGGATTATGCCAAATCTCAATGGCAAAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACACCGAGTCTCTGAATGCTGAGGATTATGCCAAATCTCAATGGCCAAA  999

seq1  TGTTATT-GGGTGAACAAAAGCAACAGGAAACTGGAAACCCACACTTGTT  1049
      ||||||| ||||||||||||||||||||||||||| || |||||||||||
seq2  TGTTATTGGGGTGAACAAAAGCAACAGGAAACTGGGAAACCACACTTGTT  1049

seq1  CTCTGGTGGCACTGGGTGCACTGTAACCAAAGTAAAAGCAGTAGGGAGCA  1099
      ||||||| |||||||||| ||||||||  |||||||| ||||| ||||| 
seq2  CTCTGGT-GCACTGGGTG-ACTGTAAC--AAGTAAAA-CAGTA-GGAGC-  1092

seq1  AAAAACTCAGCTTCACTGCTCTTGTTCTTTATATGAAAACATATTT  1145
       |||||||| | ||||||||||||||||| ||    ||||||||||
seq2  -AAAACTCA-CCTCACTGCTCTTGTTCTTAAT---GAAACATATTT  1133