BAC Information

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BAC

Clone NameB6Ng01-061M09
Chromosome18 (Build37)
Map Location 19,892,277 - 20,019,888
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M09.bB6Ng01-061M09.g
ACCDH882360DH882361
length1,1431,136
definitionDH882360|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M09, 5' end.DH882361|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,892,277 - 19,893,431)(20,018,746 - 20,019,888)
sequence
gaattcataaaacctcagcattagtgatactatggtataatggagatagg
ccacaaaatgtttgctatgaactacccaatttcacctttagcaataatca
aaacatctggaaaagtattatttggaagtccatttgggtattttaagaag
ttaatattaagaaattggaagcagaactaaggagttgctaccaaggagag
gtatccatagttgatgtgatataaaaaatgttgatgatcatgatcaaaga
acatataatacaacaaaggtcaaataacagaactcatgtttgtaaagact
ctatggaaagcaatgggctactcaatcaaagctgcttagaaagcaggtga
atgattagaaagactgaagtctttggttgtttttgcgtcatgtagtgggt
cccatcttccttggtgtactggtatgctataccctgaggaaccattcaat
actcctgtcatagttcacatttaaaattctaagaaactgtgataatgcaa
gtctttatttgacaggatcagatctatttctgtttttatctgaacatcaa
agctgtaattggatagcttttaatattcagaacaaaaatgtccaagtatt
acactgatgtttttataacatttttattctgatatgtctcatgtttaaag
gcaataaatgtaaaagtattgtgtgtcacaagtacagagtaattgttagc
acttggctataatagtagaattcatgatacctaacattttagctaccaga
aatgataatatgcatcattatctcatttgagcctcataattatgccctaa
attatggatgaatataaaataattttaatgaaaattactccccaaattcc
catatttcagaaatacaacatctcacacaatcaaaatgttgtctttaaaa
catactggaaatataagctgaaaaggatttcacaatgaatccatcagaaa
attttcctcagcaatgcttagaaaagcgtgtcttagtcgtgtattctcta
tacagtagctagttgtgtgtctattttagaccagtgcttagaatcatcat
tctgtacaaataatttggattgctcggggtgtcctggaattatataataa
ccaaactttttttttcttcgttcaaagcatggttaacttactg
gaattcagcactgctgagtactgctcagtgttagcaatatgtagctgtct
taatttcatccagattttttttcttggtacagcttgcactttaaagaatc
ttgcaacctcctagcctgctgactcctcccatatatggtccctgtttgct
tcctgtgctgacattatttattcagttacagaactttcaagttcaatttc
aataagattttgttgataaaattttattgagtacagttggctggtaaata
atacatgtgttcagtttgccactttttccaaaggtctgaagataccttta
taagtagacaaataactgcattttgggaagaaaatggagcccaagtctga
agccattaaacgtttaggttattttcatcttaagaaaatttatttcactg
aagtgttctgacttaaaatttaaacggtgtcatatgttaaagtgcttagt
attttaagtgaagtatggtggaaactgtgtgaaagtctgtaagtgtatga
gtaccaagaaggtctgaagcattcagattcttatgagatcctgatcaaat
gatgactgaagttggacaatcttctagctgtgagaatgaacatatgtaat
aatacctactcagtgaattaaaatttgttttatatttttgttaattttat
caattattataaaattgccattaataaattactctaaattagttctttaa
aatgtcacttcttaagacaatgtattctgagggctggaaaggggttatga
gcacaagctactcttccagagaaccagggttaaatttctaccacctgcat
cgtgctttataactccttataactccagttccaatgcccctttctggact
ttgtaggtaccatagacacatggtgtaaatatgcacatacctacaggtga
tacatccacacacataaataaaacaaatatattaaaatgtatgtattctg
ctgatacctacaaactgggtatcatggccaaagaaatgtcatactagtgt
aagttatcaggcagaaaaaccatttttctaaatactgccatattggacag
taattgactcttttcacctgtgtaaataagtagaaaggttgcaaatccag
aaggacctgacaattgaccatctgtgtttttttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19892277_19893431
seq2: B6Ng01-061M09.b_50_1192

seq1  GAATTCATAAAACCTCAGCATTAGTGATACTATGGTATAATGGAGATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAACCTCAGCATTAGTGATACTATGGTATAATGGAGATAGG  50

seq1  CCACAAAATGTTTGCTATGAACTACCCAATTTCACCTTTAGCAATAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATGTTTGCTATGAACTACCCAATTTCACCTTTAGCAATAATCA  100

seq1  AAACATCTGGAAAAGTATTATTTGGAAGTCCATTTGGGTATTTTAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTGGAAAAGTATTATTTGGAAGTCCATTTGGGTATTTTAAGAAG  150

seq1  TTAATATTAAGAAATTGGAAGCAGAACTAAGGAGTTGCTACCAAGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAAGAAATTGGAAGCAGAACTAAGGAGTTGCTACCAAGGAGAG  200

seq1  GTATCCATAGTTGATGTGATATAAAAAATGTTGATGATCATGATCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATAGTTGATGTGATATAAAAAATGTTGATGATCATGATCAAAGA  250

seq1  ACATATAATACAACAAAGGTCAAATAACAGAACTCATGTTTGTAAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATACAACAAAGGTCAAATAACAGAACTCATGTTTGTAAAGACT  300

seq1  CTATGGAAAGCAATGGGCTACTCAATCAAAGCTGCTTAGAAAGCAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAGCAATGGGCTACTCAATCAAAGCTGCTTAGAAAGCAGGTGA  350

seq1  ATGATTAGAAAGACTGAAGTCTTTGGTTGTTTTTGCGTCATGTAGTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGAAAGACTGAAGTCTTTGGTTGTTTTTGCGTCATGTAGTGGGT  400

seq1  CCCATCTTCCTTGGTGTACTGGTATGCTATACCCTGAGGAACCATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTCCTTGGTGTACTGGTATGCTATACCCTGAGGAACCATTCAAT  450

seq1  ACTCCTGTCATAGTTCACATTTAAAATTCTAAGAAACTGTGATAATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTCATAGTTCACATTTAAAATTCTAAGAAACTGTGATAATGCAA  500

seq1  GTCTTTATTTGACAGGATCAGATCTATTTCTGTTTTTATCTGAACATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTTGACAGGATCAGATCTATTTCTGTTTTTATCTGAACATCAA  550

seq1  AGCTGTAATTGGATAGCTTTTAATATTCAGAACAAAAATGTCCAAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAATTGGATAGCTTTTAATATTCAGAACAAAAATGTCCAAGTATT  600

seq1  ACACTGATGTTTTTATAACATTTTTATTCTGATATGTCTCATGTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATGTTTTTATAACATTTTTATTCTGATATGTCTCATGTTTAAAG  650

seq1  GCAATAAATGTAAAAGTATTGTGTGTCACAAGTACAGAGTAATTGTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAATGTAAAAGTATTGTGTGTCACAAGTACAGAGTAATTGTTAGC  700

seq1  ACTTGGCTATAATAGTAGAATTCATGATACCTAACATTTTAGCTACCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTATAATAGTAGAATTCATGATACCTAACATTTTAGCTACCAGA  750

seq1  AATGATAATATGCATCATTATCTCATTTGAGCCTCATAATTATGCCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATATGCATCATTATCTCATTTGAGCCTCATAATTATGCCCTAA  800

seq1  ATTATGGATGAATATAAAATAATTTTAATGAAAATTACTCCCCAAATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGATGAATATAAAATAATTTTAATGAAAATTACTCCCCAAATTCC  850

seq1  CATATTTCAGAAATACAAACATCTCACACAATCAAAATGTTGTCTTTAAA  900
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  CATATTTCAGAAATAC-AACATCTCACACAATCAAAATGTTGTCTTT-AA  898

seq1  AACATACTGGAAATATAAGCTGAAAAGGATTTCAACAATGAATCCATCAG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACATACTGGAAATATAAGCTGAAAAGGATTTC-ACAATGAATCCATCAG  947

seq1  AAAATTTTCCTCAGCAAATGCTTAGAAAAAGCGTGTCTTAGTCGTGTATT  1000
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  AAAATTTTCCTCAGC-AATGCTTAG-AAAAGCGTGTCTTAGTCGTGTATT  995

seq1  CTCTATACAGTAGCTAGTTGTGTGTCTATTTTTAAGACCAGTGCTTAGAA  1050
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CTCTATACAGTAGCTAGTTGTGTGTCTATTTT--AGACCAGTGCTTAGAA  1043

seq1  TCACCATCCTGTACAAATTAATTATGGTTTGCTCGGTGTGTCCTGAATTT  1100
      ||| ||| ||||||||| ||||| ||| |||||||| |||||||| | ||
seq2  TCATCATTCTGTACAAA-TAATT-TGGATTGCTCGGGGTGTCCTGGAATT  1091

seq1  ATATAAATAAACCAAACTCTTCTTTTCTTCGTTACAAAAGCAT-GTTAAC  1149
      ||||||   ||||||||| || |||||||||||   ||||||| ||||||
seq2  ATATAA--TAACCAAACTTTTTTTTTCTTCGTT--CAAAGCATGGTTAAC  1137

seq1  TTACTG  1155
      ||||||
seq2  TTACTG  1143

seq1: chr18_20018746_20019888
seq2: B6Ng01-061M09.g_69_1204 (reverse)

seq1  GACAAACAAACACAGATGTCAAATTGTCAGGTCCCTCCTGGTATCTGCAA  50
      |||||| |||||||||||   ||||||||||| ||| |||| || |||||
seq2  GACAAAAAAACACAGATGGTCAATTGTCAGGT-CCTTCTGG-ATTTGCAA  48

seq1  CCCTTTCTACTTATTTACACAGTGGATATGAGTCAATTACTGTCCATATT  100
       |||||||||||||||||||||  || | |||||||||||||||||   |
seq2  -CCTTTCTACTTATTTACACAGGTGAAAAGAGTCAATTACTGTCCAATAT  97

seq1  GGCAGTATTTTAGAAAAATGGTTTTTCTTGCCTGATAAACTACACTAGTA  150
      ||||||| ||||||||||||||||||| ||||||||||  ||||||||||
seq2  GGCAGTA-TTTAGAAAAATGGTTTTTC-TGCCTGATAACTTACACTAGTA  145

seq1  TGACATTTCTTTGGCCAATGATACCCAGTTTGTAGGTATCAGCAGAATAC  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGACATTTCTTTGGCC-ATGATACCCAGTTTGTAGGTATCAGCAGAATAC  194

seq1  ATACATTTTAATATATTTGTTTTATTTTATGTGTGTGGATGTATCACCTG  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATACATTTTAATATATTTGTTTTA-TTTATGTGTGTGGATGTATCACCTG  243

seq1  TAGGTATGTGCATATTTACACCATGTGTCTATGGTACCTACAAAGTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGTGCATATTTACACCATGTGTCTATGGTACCTACAAAGTCCAG  293

seq1  AAAGGGGCATTGGAACTGGAGTTATAAGGAGTTATAAAGCACGATGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCATTGGAACTGGAGTTATAAGGAGTTATAAAGCACGATGCAGG  343

seq1  TGGTAGAAATTTAACCCTGGTTCTCTGGAAGAGTAGCTTGTGCTCATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAATTTAACCCTGGTTCTCTGGAAGAGTAGCTTGTGCTCATAAC  393

seq1  CCCTTTCCAGCCCTCAGAATACATTGTCTTAAGAAGTGACATTTTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCAGCCCTCAGAATACATTGTCTTAAGAAGTGACATTTTAAAGA  443

seq1  ACTAATTTAGAGTAATTTATTAATGGCAATTTTATAATAATTGATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTAGAGTAATTTATTAATGGCAATTTTATAATAATTGATAAAAT  493

seq1  TAACAAAAATATAAAACAAATTTTAATTCACTGAGTAGGTATTATTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAATATAAAACAAATTTTAATTCACTGAGTAGGTATTATTACAT  543

seq1  ATGTTCATTCTCACAGCTAGAAGATTGTCCAACTTCAGTCATCATTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTCTCACAGCTAGAAGATTGTCCAACTTCAGTCATCATTTGAT  593

seq1  CAGGATCTCATAAGAATCTGAATGCTTCAGACCTTCTTGGTACTCATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTCATAAGAATCTGAATGCTTCAGACCTTCTTGGTACTCATACA  643

seq1  CTTACAGACTTTCACACAGTTTCCACCATACTTCACTTAAAATACTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACTTTCACACAGTTTCCACCATACTTCACTTAAAATACTAAGC  693

seq1  ACTTTAACATATGACACCGTTTAAATTTTAAGTCAGAACACTTCAGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACATATGACACCGTTTAAATTTTAAGTCAGAACACTTCAGTGAA  743

seq1  ATAAATTTTCTTAAGATGAAAATAACCTAAACGTTTAATGGCTTCAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTCTTAAGATGAAAATAACCTAAACGTTTAATGGCTTCAGACT  793

seq1  TGGGCTCCATTTTCTTCCCAAAATGCAGTTATTTGTCTACTTATAAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCATTTTCTTCCCAAAATGCAGTTATTTGTCTACTTATAAAGGT  843

seq1  ATCTTCAGACCTTTGGAAAAAGTGGCAAACTGAACACATGTATTATTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGACCTTTGGAAAAAGTGGCAAACTGAACACATGTATTATTTAC  893

seq1  CAGCCAACTGTACTCAATAAAATTTTATCAACAAAATCTTATTGAAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACTGTACTCAATAAAATTTTATCAACAAAATCTTATTGAAATTG  943

seq1  AACTTGAAAGTTCTGTAACTGAATAAATAATGTCAGCACAGGAAGCAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAGTTCTGTAACTGAATAAATAATGTCAGCACAGGAAGCAAAC  993

seq1  AGGGACCATATATGGGAGGAGTCAGCAGGCTAGGAGGTTGCAAGATTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCATATATGGGAGGAGTCAGCAGGCTAGGAGGTTGCAAGATTCTT  1043

seq1  TAAAGTGCAAGCTGTACCAAGAAAAAAAATCTGGATGAAATTAAGACAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGCAAGCTGTACCAAGAAAAAAAATCTGGATGAAATTAAGACAGC  1093

seq1  TACATATTGCTAACACTGAGCAGTACTCAGCAGTGCTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGCTAACACTGAGCAGTACTCAGCAGTGCTGAATTC  1136